Wall clock time and date at job start Mon Mar 30 2020 06:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47565 * 2 1 4 4 C 1.50700 * 109.47348 * 239.99377 * 2 1 3 5 5 H 1.08000 * 120.00182 * 245.60975 * 4 2 1 6 6 C 1.37882 * 119.99758 * 65.61215 * 4 2 1 7 7 N 1.31506 * 119.99937 * 197.62528 * 6 4 2 8 8 Si 1.86804 * 119.99989 * 17.34878 * 6 4 2 9 9 H 1.48497 * 109.46671 * 180.27749 * 8 6 4 10 10 H 1.48500 * 109.47051 * 300.27555 * 8 6 4 11 11 H 1.48500 * 109.47162 * 60.27630 * 8 6 4 12 12 C 1.50706 * 109.46906 * 119.99758 * 2 1 3 13 13 C 1.35462 * 126.05247 * 60.02346 * 12 2 1 14 14 Cl 1.73593 * 126.13977 * 0.02562 * 13 12 2 15 15 N 1.34987 * 107.71465 * 180.02562 * 13 12 2 16 16 C 1.46496 * 126.03293 * 179.97438 * 15 13 12 17 17 N 1.40083 * 107.92850 * 0.02562 * 15 13 12 18 18 C 1.30837 * 108.23834 * 359.71765 * 17 15 13 19 19 C 1.50697 * 125.88990 * 180.25507 * 18 17 15 20 20 C 1.52999 * 117.49823 * 8.96686 * 19 18 17 21 21 C 1.52997 * 117.49954 * 300.30224 * 19 18 17 22 22 H 1.09000 * 109.47338 * 186.19599 * 1 2 3 23 23 H 1.09005 * 109.47256 * 306.19957 * 1 2 3 24 24 H 1.09002 * 109.47146 * 66.19389 * 1 2 3 25 25 H 0.97002 * 119.99970 * 354.45938 * 7 6 4 26 26 H 1.09003 * 109.47304 * 89.99818 * 16 15 13 27 27 H 1.08998 * 109.47406 * 209.99979 * 16 15 13 28 28 H 1.08997 * 109.47086 * 330.00111 * 16 15 13 29 29 H 1.09004 * 115.54572 * 154.63470 * 19 18 17 30 30 H 1.08996 * 117.50254 * 359.97438 * 20 19 18 31 31 H 1.09003 * 117.49867 * 145.02430 * 20 19 18 32 32 H 1.08996 * 117.49805 * 214.97873 * 21 19 18 33 33 H 1.09001 * 117.50112 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5765 -1.6384 -1.1338 6 6 1.7973 -0.1759 -2.4794 7 7 1.9137 -0.9306 -3.5501 8 14 1.3059 1.6182 -2.6501 9 1 1.1062 1.9422 -4.0855 10 1 0.0422 1.8581 -1.9080 11 1 2.3787 2.4805 -2.0925 12 6 2.0322 -0.7104 1.2306 13 6 1.7820 -1.9990 1.5652 14 17 0.8270 -3.1264 0.6539 15 7 2.4087 -2.2488 2.7344 16 6 2.4029 -3.5212 3.4605 17 7 3.0644 -1.0763 3.1313 18 6 2.8430 -0.1571 2.2270 19 6 3.3678 1.2553 2.2559 20 6 4.4043 1.6019 3.3266 21 6 2.9729 2.1313 3.4465 22 1 -0.3634 -1.0216 0.1109 23 1 -0.3634 0.6070 0.8293 24 1 -0.3633 0.4148 -0.9402 25 1 2.2422 -1.8397 -3.4694 26 1 3.2409 -4.1335 3.1273 27 1 2.4953 -3.3298 4.5296 28 1 1.4684 -4.0469 3.2648 29 1 3.4658 1.7403 1.2847 30 1 4.7063 0.8086 4.0103 31 1 5.1840 2.3155 3.0600 32 1 2.8117 3.1928 3.2587 33 1 2.3332 1.6863 4.2086 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260991927.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:14 Heat of formation + Delta-G solvation = 72.130478 kcal Electronic energy + Delta-G solvation = -16979.109050 eV Core-core repulsion = 14260.520961 eV Total energy + Delta-G solvation = -2718.588089 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.35228 -38.12673 -37.60026 -36.47225 -34.05527 -32.98280 -29.96431 -27.94449 -26.57517 -24.16021 -23.38316 -23.10239 -20.97937 -20.20825 -19.27734 -18.02339 -16.73013 -16.35547 -16.03967 -15.66919 -15.06397 -14.75897 -14.44134 -14.12600 -13.87334 -13.61933 -13.17982 -12.97014 -12.87238 -12.74934 -12.42070 -12.32767 -12.18310 -11.84597 -11.58563 -11.46995 -11.34872 -11.08447 -10.85200 -10.23315 -9.91978 -9.23727 -8.51735 -6.15705 0.55598 0.66786 1.54443 1.61073 1.63890 1.77420 1.80465 2.60467 3.07679 3.22337 3.42128 3.72524 3.99917 4.19467 4.28875 4.32477 4.36093 4.52029 4.67231 4.71428 4.81465 4.86733 4.96605 5.08157 5.11995 5.24613 5.32187 5.40364 5.62047 5.74174 5.86094 6.18658 6.22914 6.59154 6.76394 7.58729 8.80953 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.017165 B = 0.010466 C = 0.007218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.793292 B = 2674.698456 C = 3878.151900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.084 3.916 3 H 0.036 0.964 4 C -0.566 4.566 5 H 0.017 0.983 6 C -0.022 4.022 7 N -0.946 5.946 8 Si 1.076 2.924 9 H -0.297 1.297 10 H -0.242 1.242 11 H -0.261 1.261 12 C -0.181 4.181 13 C 0.108 3.892 14 Cl -0.001 7.001 15 N -0.378 5.378 16 C 0.093 3.907 17 N -0.291 5.291 18 C 0.101 3.899 19 C -0.109 4.109 20 C -0.153 4.153 21 C -0.144 4.144 22 H 0.044 0.956 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.248 0.752 26 H 0.083 0.917 27 H 0.111 0.889 28 H 0.098 0.902 29 H 0.121 0.879 30 H 0.092 0.908 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.166 1.771 15.772 15.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.064 3.936 3 H 0.054 0.946 4 C -0.604 4.604 5 H 0.036 0.964 6 C -0.219 4.219 7 N -0.583 5.583 8 Si 0.898 3.102 9 H -0.224 1.224 10 H -0.167 1.167 11 H -0.186 1.186 12 C -0.193 4.193 13 C -0.044 4.044 14 Cl 0.027 6.973 15 N -0.164 5.164 16 C -0.047 4.047 17 N -0.116 5.116 18 C -0.063 4.063 19 C -0.129 4.129 20 C -0.190 4.190 21 C -0.182 4.182 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.102 0.898 27 H 0.129 0.871 28 H 0.117 0.883 29 H 0.139 0.861 30 H 0.110 0.890 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.160 2.324 15.791 15.961 hybrid contribution 0.153 -2.103 -0.316 2.132 sum -0.007 0.221 15.474 15.476 Atomic orbital electron populations 1.22180 0.97312 1.00798 0.99935 1.17434 0.92595 0.94823 0.88772 0.94575 1.22005 1.38084 1.08033 0.92318 0.96411 1.27028 0.94823 1.08030 0.92004 1.70996 1.45213 1.09361 1.32761 0.83704 0.79105 0.71547 0.75862 1.22366 1.16651 1.18631 1.20044 1.05767 0.92967 1.00525 1.21361 1.00494 0.92727 0.89797 1.98360 1.68304 1.59500 1.71152 1.48646 1.39660 1.11584 1.16528 1.22180 1.04582 0.79488 0.98443 1.77142 1.19720 0.91483 1.23208 1.21487 0.96941 0.95764 0.92139 1.20398 1.06850 0.88603 0.97013 1.23036 0.92881 1.03306 0.99813 1.23073 0.97869 0.99838 0.97416 0.93660 0.93588 0.93488 0.94345 0.89806 0.87053 0.88345 0.86123 0.88994 0.86194 0.85731 0.89226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.28 8.79 71.98 0.63 -5.64 16 2 C 0.08 3.94 2.08 -12.29 -0.03 3.91 16 3 H 0.04 1.65 5.66 -2.39 -0.01 1.64 16 4 C -0.57 -31.68 8.06 25.60 0.21 -31.47 16 5 H 0.02 1.10 7.78 -2.91 -0.02 1.08 16 6 C -0.02 -1.28 5.30 84.66 0.45 -0.83 16 7 N -0.95 -59.55 13.69 21.45 0.29 -59.25 16 8 Si 1.08 49.47 26.29 68.60 1.80 51.27 16 9 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 10 H -0.24 -9.88 5.74 99.48 0.57 -9.31 16 11 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 12 C -0.18 -7.91 4.80 -20.11 -0.10 -8.00 16 13 C 0.11 4.38 7.09 83.57 0.59 4.97 16 14 Cl 0.00 -0.05 25.86 -2.72 -0.07 -0.12 16 15 N -0.38 -13.20 4.01 -359.28 -1.44 -14.65 16 16 C 0.09 2.15 11.31 127.77 1.44 3.59 16 17 N -0.29 -10.71 12.15 -47.39 -0.58 -11.29 16 18 C 0.10 3.90 6.75 43.10 0.29 4.20 16 19 C -0.11 -3.43 5.86 -11.54 -0.07 -3.50 16 20 C -0.15 -3.74 10.14 30.62 0.31 -3.43 16 21 C -0.14 -3.43 10.24 30.62 0.31 -3.11 16 22 H 0.04 1.96 5.99 -2.39 -0.01 1.94 16 23 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 24 H 0.05 2.08 4.86 -2.39 -0.01 2.07 16 25 H 0.25 15.95 8.73 -92.71 -0.81 15.14 16 26 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.10 1.98 7.80 -2.39 -0.02 1.96 16 29 H 0.12 3.94 7.40 -2.38 -0.02 3.92 16 30 H 0.09 2.38 7.90 -2.39 -0.02 2.36 16 31 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -68.88 287.34 5.00 -63.88 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 0.94 Total: 9.48 kcal Atomic # 6 Polarization: -43.38 SS G_CDS: 4.05 Total: -39.33 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -1.72 Total: -85.19 kcal Atomic # 14 Polarization: 49.47 SS G_CDS: 1.80 Total: 51.27 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -0.07 Total: -0.12 kcal Total: -68.88 5.00 -63.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260991927.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.009 kcal (2) G-P(sol) polarization free energy of solvation -68.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds