Wall clock time and date at job start Mon Mar 30 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47027 * 2 1 4 4 N 1.30816 * 125.70870 * 269.95935 * 3 2 1 5 5 C 1.34468 * 109.33827 * 180.09052 * 4 3 2 6 6 Cl 1.73590 * 126.10857 * 180.02562 * 5 4 3 7 7 C 1.33936 * 107.77808 * 0.02562 * 5 4 3 8 8 N 1.34377 * 125.71074 * 89.99975 * 3 2 1 9 9 C 1.46471 * 128.46476 * 359.81028 * 8 3 2 10 10 C 1.53292 * 108.68615 * 197.31662 * 9 8 3 11 11 C 1.53117 * 109.71211 * 309.21777 * 10 9 8 12 12 C 1.50726 * 128.69765 * 179.82786 * 7 5 4 13 13 H 1.08997 * 109.72477 * 76.15449 * 12 7 5 14 14 C 1.50698 * 109.77199 * 315.42580 * 12 7 5 15 15 H 1.07993 * 120.00195 * 326.26830 * 14 12 7 16 16 C 1.37880 * 119.99532 * 146.26997 * 14 12 7 17 17 N 1.31504 * 120.00128 * 5.17473 * 16 14 12 18 18 Si 1.86803 * 119.99568 * 185.17380 * 16 14 12 19 19 H 1.48496 * 109.46990 * 90.00190 * 18 16 14 20 20 H 1.48503 * 109.47060 * 210.00087 * 18 16 14 21 21 H 1.48505 * 109.47055 * 329.99947 * 18 16 14 22 22 H 1.09007 * 109.47286 * 60.00010 * 1 2 3 23 23 H 1.08998 * 109.47563 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47299 * 299.99971 * 1 2 3 25 25 H 1.08998 * 109.46832 * 240.00244 * 2 1 3 26 26 H 1.08993 * 109.47243 * 119.99832 * 2 1 3 27 27 H 1.09001 * 109.60483 * 77.56126 * 9 8 3 28 28 H 1.08995 * 109.73218 * 317.15357 * 9 8 3 29 29 H 1.08998 * 109.43189 * 189.13922 * 10 9 8 30 30 H 1.09000 * 109.38921 * 69.26442 * 10 9 8 31 31 H 1.09003 * 109.49347 * 189.89956 * 11 10 9 32 32 H 1.09004 * 109.49482 * 309.95928 * 11 10 9 33 33 H 0.97007 * 120.00070 * 185.00124 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2875 2.1405 -1.0622 5 6 2.7192 3.3563 -0.6832 6 17 3.1790 4.6540 -1.7405 7 6 2.7310 3.3870 0.6557 8 7 2.2937 2.1604 1.0911 9 6 2.1570 1.7851 2.5003 10 6 2.1513 3.0609 3.3500 11 6 3.3495 3.9371 2.9742 12 6 3.1359 4.5157 1.5689 13 1 2.3469 5.2672 1.5970 14 6 4.4158 5.1382 1.0735 15 1 5.1638 4.5250 0.5931 16 6 4.6317 6.4905 1.2336 17 7 3.7689 7.2188 1.9077 18 14 6.1500 7.2879 0.4931 19 1 5.8435 7.7523 -0.8837 20 1 6.5571 8.4471 1.3273 21 1 7.2563 6.2984 0.4470 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.9960 1.1541 2.7938 28 1 1.2228 1.2433 2.6479 29 1 2.2137 2.7943 4.4050 30 1 1.2284 3.6119 3.1693 31 1 3.4442 4.7514 3.6926 32 1 4.2581 3.3349 2.9850 33 1 3.8820 8.1809 1.9592 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261004660.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:35 Heat of formation + Delta-G solvation = 31.201146 kcal Electronic energy + Delta-G solvation = -17173.218226 eV Core-core repulsion = 14452.855308 eV Total energy + Delta-G solvation = -2720.362918 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.71460 -36.14031 -35.46625 -33.77354 -33.02317 -31.06477 -29.68268 -26.82542 -25.29070 -23.48557 -22.37092 -21.14481 -19.78570 -18.25055 -16.63798 -16.23561 -15.25034 -14.69385 -14.26865 -13.99532 -13.55955 -13.48139 -13.15617 -12.90013 -12.65327 -12.30362 -11.62085 -11.53959 -11.33030 -11.07146 -10.91692 -10.71857 -10.49720 -10.26839 -10.23597 -10.10814 -9.55893 -9.31903 -9.08971 -8.74010 -8.41619 -7.25584 -6.06423 -4.08087 2.71004 2.92665 3.32244 3.39305 3.43141 3.55155 3.65689 4.44940 4.79176 4.95155 5.09962 5.12168 5.23996 5.37802 5.40456 5.59587 5.71239 5.83276 5.90474 6.02534 6.06221 6.22098 6.23199 6.38881 6.68881 6.77035 6.95533 7.19544 7.40096 7.58964 7.83901 7.88933 8.26539 8.62393 8.96819 9.55665 11.02256 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.025965 B = 0.008557 C = 0.006882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.116363 B = 3271.574097 C = 4067.369200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.029 4.029 3 C 0.188 3.812 4 N -0.490 5.490 5 C 0.040 3.960 6 Cl -0.014 7.014 7 C 0.055 3.945 8 N -0.456 5.456 9 C 0.111 3.889 10 C -0.137 4.137 11 C -0.111 4.111 12 C 0.106 3.894 13 H 0.077 0.923 14 C -0.491 4.491 15 H 0.058 0.942 16 C 0.074 3.926 17 N -0.891 5.891 18 Si 0.885 3.115 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.272 1.272 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.049 -11.076 1.790 12.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.068 4.068 3 C -0.073 4.073 4 N -0.212 5.212 5 C -0.112 4.112 6 Cl 0.014 6.986 7 C -0.061 4.061 8 N -0.142 5.142 9 C -0.011 4.011 10 C -0.175 4.175 11 C -0.150 4.150 12 C 0.086 3.914 13 H 0.094 0.906 14 C -0.529 4.529 15 H 0.076 0.924 16 C -0.129 4.129 17 N -0.529 5.529 18 Si 0.713 3.287 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.197 1.197 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.111 -11.095 1.133 12.268 hybrid contribution 0.943 0.867 0.241 1.303 sum -4.169 -10.228 1.374 11.130 Atomic orbital electron populations 1.21733 0.94491 1.01560 1.02535 1.19801 0.95930 0.87729 1.03330 1.22617 1.07091 0.96404 0.81220 1.69936 1.19132 1.03276 1.28852 1.19911 1.11779 0.90951 0.88564 1.98306 1.90906 1.43869 1.65514 1.22160 1.01124 0.88085 0.94761 1.45256 1.49959 1.12124 1.06834 1.21873 1.01848 0.98929 0.78438 1.22005 1.02006 0.95189 0.98308 1.21889 0.94557 0.97957 1.00573 1.17766 0.98579 0.87944 0.87090 0.90572 1.20773 1.01114 0.93156 1.37880 0.92421 1.24828 0.96563 0.97240 0.94238 1.69914 1.36991 1.06091 1.39917 0.86676 0.83559 0.79064 0.79442 1.20369 1.21323 1.19714 0.91914 0.92113 0.92983 0.89246 0.90900 0.90569 0.90262 0.90978 0.91455 0.91057 0.93201 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.89 37.16 0.37 -1.24 16 2 C -0.03 -0.37 6.29 -27.88 -0.18 -0.54 16 3 C 0.19 3.43 7.19 -155.75 -1.12 2.31 16 4 N -0.49 -10.65 11.27 -8.18 -0.09 -10.74 16 5 C 0.04 0.93 7.56 -17.91 -0.14 0.80 16 6 Cl -0.01 -0.32 27.80 -51.86 -1.44 -1.77 16 7 C 0.05 1.24 6.09 -81.64 -0.50 0.74 16 8 N -0.46 -8.55 3.13 -109.37 -0.34 -8.90 16 9 C 0.11 1.61 6.61 -3.91 -0.03 1.58 16 10 C -0.14 -2.15 5.92 -26.52 -0.16 -2.31 16 11 C -0.11 -2.27 5.27 -26.43 -0.14 -2.41 16 12 C 0.11 2.54 2.52 -92.67 -0.23 2.30 16 13 H 0.08 2.04 7.42 -51.93 -0.39 1.66 16 14 C -0.49 -12.95 6.70 -34.44 -0.23 -13.18 16 15 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 16 C 0.07 1.97 5.45 -17.82 -0.10 1.88 16 17 N -0.89 -24.70 12.86 55.43 0.71 -23.99 16 18 Si 0.89 21.29 29.54 -169.99 -5.02 16.26 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.07 0.77 7.95 -51.93 -0.41 0.36 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 1.10 8.11 -51.93 -0.42 0.68 16 31 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 33 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 LS Contribution 288.26 15.07 4.34 4.34 Total: -1.00 -29.77 288.26 -8.85 -38.62 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -4.57 Total: -3.77 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -2.44 Total: -10.07 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.28 Total: -43.63 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.44 Total: -1.77 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.77 -8.85 -38.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261004660.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.825 kcal (2) G-P(sol) polarization free energy of solvation -29.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds