Wall clock time and date at job start Mon Mar 30 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47066 * 2 1 4 4 N 1.34327 * 125.96611 * 270.17510 * 3 2 1 5 5 C 1.30064 * 109.22621 * 180.28277 * 4 3 2 6 6 N 1.35552 * 108.63489 * 359.67746 * 5 4 3 7 7 C 1.34977 * 125.96279 * 90.00359 * 3 2 1 8 8 Cl 1.73602 * 126.66585 * 0.04579 * 7 3 2 9 9 C 1.46471 * 124.81439 * 180.12881 * 6 5 4 10 10 C 1.53265 * 108.79048 * 17.09720 * 9 6 5 11 11 C 1.53151 * 109.49963 * 309.61096 * 10 9 6 12 12 C 1.51045 * 127.40514 * 179.64594 * 5 4 3 13 13 H 1.08998 * 109.71562 * 76.29431 * 12 5 4 14 14 C 1.50700 * 109.74576 * 315.67450 * 12 5 4 15 15 H 1.07999 * 120.00359 * 276.57027 * 14 12 5 16 16 C 1.37877 * 120.00214 * 96.58061 * 14 12 5 17 17 N 1.31512 * 120.00210 * 186.20478 * 16 14 12 18 18 Si 1.86802 * 119.99920 * 6.19395 * 16 14 12 19 19 H 1.48501 * 109.46747 * 84.77930 * 18 16 14 20 20 H 1.48496 * 109.47423 * 204.78189 * 18 16 14 21 21 H 1.48500 * 109.47266 * 324.78631 * 18 16 14 22 22 H 1.09000 * 109.47189 * 59.99809 * 1 2 3 23 23 H 1.08997 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46919 * 299.99994 * 1 2 3 25 25 H 1.09002 * 109.46555 * 240.00694 * 2 1 3 26 26 H 1.09000 * 109.47189 * 120.00191 * 2 1 3 27 27 H 1.09000 * 109.58087 * 136.88469 * 9 6 5 28 28 H 1.08997 * 109.58770 * 257.16406 * 9 6 5 29 29 H 1.09007 * 109.46601 * 69.61923 * 10 9 6 30 30 H 1.08994 * 109.46551 * 189.60082 * 10 9 6 31 31 H 1.08994 * 109.50790 * 189.45834 * 11 10 9 32 32 H 1.08999 * 109.50801 * 309.55398 * 11 10 9 33 33 H 0.97000 * 119.99733 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2922 2.1658 -1.0872 5 6 2.7141 3.3376 -0.7126 6 7 2.7300 3.3796 0.6422 7 6 2.2966 2.1682 1.0925 8 17 2.1250 1.6791 2.7493 9 6 3.1443 4.5373 1.4382 10 6 3.1351 5.7809 0.5425 11 6 3.9159 5.4911 -0.7427 12 6 3.1288 4.4895 -1.5973 13 1 2.2436 4.9736 -2.0097 14 6 3.9997 3.9828 -2.7180 15 1 5.0570 3.8342 -2.5554 16 6 3.4468 3.7090 -3.9510 17 7 4.1790 3.1528 -4.8913 18 14 1.6574 4.1279 -4.2860 19 1 1.5521 5.5480 -4.7074 20 1 1.1375 3.2513 -5.3660 21 1 0.8602 3.9178 -3.0509 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8932 -0.5137 -0.8901 26 1 1.8934 -0.5139 0.8900 27 1 2.4499 4.6784 2.2664 28 1 4.1488 4.3724 1.8276 29 1 2.1065 6.0406 0.2920 30 1 3.6011 6.6125 1.0710 31 1 4.0538 6.4168 -1.3014 32 1 4.8889 5.0698 -0.4903 33 1 3.7898 2.9600 -5.7586 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261006072.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:37 Heat of formation + Delta-G solvation = 33.897630 kcal Electronic energy + Delta-G solvation = -17164.847869 eV Core-core repulsion = 14444.601879 eV Total energy + Delta-G solvation = -2720.245990 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.67615 -36.58315 -36.19360 -33.68290 -32.96209 -31.60340 -29.04219 -27.51071 -25.47472 -23.37634 -21.79863 -21.60074 -19.46457 -18.46437 -17.12724 -16.40414 -15.46546 -14.58703 -14.35615 -14.18163 -13.67872 -13.52960 -13.24425 -12.79816 -12.55641 -12.16322 -12.12708 -11.77624 -11.29137 -11.20243 -10.95448 -10.88229 -10.77638 -10.67744 -10.37705 -9.82606 -9.76923 -9.48350 -9.00369 -8.86121 -8.53825 -7.41924 -6.10482 -4.13420 2.10697 2.48595 3.32245 3.43093 3.46322 3.51903 3.84609 4.46914 4.83673 5.00724 5.02564 5.15197 5.31810 5.45172 5.63988 5.72222 5.77349 5.78952 5.91307 5.95942 6.10448 6.19133 6.28523 6.37141 6.49888 6.56462 6.79241 6.83683 6.99767 7.20029 7.55386 7.84720 8.42048 8.86895 8.97641 9.52316 11.01422 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.020717 B = 0.009460 C = 0.007259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.221115 B = 2959.247931 C = 3856.103265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.037 4.037 3 C 0.030 3.970 4 N -0.464 5.464 5 C 0.273 3.727 6 N -0.466 5.466 7 C -0.014 4.014 8 Cl -0.038 7.038 9 C 0.108 3.892 10 C -0.137 4.137 11 C -0.112 4.112 12 C 0.091 3.909 13 H 0.060 0.940 14 C -0.505 4.505 15 H 0.076 0.924 16 C 0.093 3.907 17 N -0.886 5.886 18 Si 0.878 3.122 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.258 1.258 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.021 1.142 13.386 14.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.076 4.076 3 C -0.102 4.102 4 N -0.181 5.181 5 C 0.010 3.990 6 N -0.153 5.153 7 C -0.153 4.153 8 Cl -0.010 7.010 9 C -0.014 4.014 10 C -0.175 4.175 11 C -0.150 4.150 12 C 0.070 3.930 13 H 0.078 0.922 14 C -0.542 4.542 15 H 0.094 0.906 16 C -0.112 4.112 17 N -0.521 5.521 18 Si 0.705 3.295 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.183 1.183 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.085 0.868 12.637 13.649 hybrid contribution -0.736 0.258 0.971 1.246 sum -5.820 1.126 13.608 14.844 Atomic orbital electron populations 1.21679 0.95226 1.00964 1.01991 1.19767 0.95419 0.89878 1.02499 1.20573 1.05440 0.97262 0.86954 1.70271 1.18316 1.02198 1.27328 1.25382 0.97432 0.97525 0.78615 1.45565 1.50820 1.10445 1.08447 1.21162 1.17780 0.90320 0.85999 1.98295 1.96869 1.89788 1.16028 1.21855 1.00644 0.84754 0.94160 1.21998 1.02347 0.95504 0.97639 1.21778 0.98972 1.00424 0.93836 1.18113 0.96460 0.86575 0.91805 0.92220 1.20567 0.95423 1.45414 0.92783 0.90625 1.24960 0.97410 0.92876 0.95963 1.69894 1.37077 1.40304 1.04855 0.86812 0.86202 0.77810 0.78682 1.20575 1.21320 1.18260 0.92454 0.92754 0.93111 0.90385 0.91249 0.90320 0.90424 0.91216 0.90158 0.90607 0.91781 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.89 37.16 0.37 -1.71 16 2 C -0.04 -0.63 6.32 -27.88 -0.18 -0.80 16 3 C 0.03 0.61 6.36 -82.66 -0.53 0.09 16 4 N -0.46 -11.39 11.12 -6.82 -0.08 -11.47 16 5 C 0.27 6.28 6.99 -155.14 -1.08 5.20 16 6 N -0.47 -9.03 3.14 -110.27 -0.35 -9.37 16 7 C -0.01 -0.26 7.51 -16.72 -0.13 -0.39 16 8 Cl -0.04 -0.56 28.78 -51.86 -1.49 -2.05 16 9 C 0.11 1.60 6.86 -3.92 -0.03 1.57 16 10 C -0.14 -1.92 5.94 -26.52 -0.16 -2.08 16 11 C -0.11 -2.00 5.27 -26.45 -0.14 -2.14 16 12 C 0.09 2.09 2.20 -92.55 -0.20 1.89 16 13 H 0.06 1.38 5.21 -51.93 -0.27 1.11 16 14 C -0.50 -13.83 8.76 -34.44 -0.30 -14.14 16 15 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 16 C 0.09 2.65 5.47 -17.82 -0.10 2.55 16 17 N -0.89 -26.83 13.96 55.43 0.77 -26.06 16 18 Si 0.88 21.90 27.04 -169.99 -4.60 17.31 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.26 -6.43 6.75 56.52 0.38 -6.05 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 26 H 0.07 1.02 7.93 -51.93 -0.41 0.61 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 33 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 287.40 15.07 4.33 4.33 Total: -1.00 -31.47 287.40 -8.36 -39.83 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -4.48 Total: -2.55 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -2.47 Total: -9.96 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: 0.35 Total: -46.90 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.60 Total: 17.31 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.49 Total: -2.05 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.47 -8.36 -39.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261006072.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.726 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds