Wall clock time and date at job start Mon Mar 30 2020 05:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47066 * 2 1 4 4 N 1.34327 * 125.96611 * 270.17510 * 3 2 1 5 5 C 1.30064 * 109.22621 * 180.28277 * 4 3 2 6 6 N 1.35552 * 108.63489 * 359.67746 * 5 4 3 7 7 C 1.34977 * 125.96279 * 90.00359 * 3 2 1 8 8 Cl 1.73602 * 126.66585 * 0.04579 * 7 3 2 9 9 C 1.46471 * 124.81439 * 180.12881 * 6 5 4 10 10 C 1.53265 * 108.79048 * 17.09720 * 9 6 5 11 11 C 1.53151 * 109.49963 * 309.61096 * 10 9 6 12 12 C 1.51045 * 127.40514 * 179.64594 * 5 4 3 13 13 H 1.08998 * 109.71562 * 76.29431 * 12 5 4 14 14 C 1.50700 * 109.74576 * 315.67450 * 12 5 4 15 15 H 1.07999 * 120.00359 * 276.57027 * 14 12 5 16 16 C 1.37877 * 120.00214 * 96.58061 * 14 12 5 17 17 N 1.31512 * 120.00210 * 186.20478 * 16 14 12 18 18 Si 1.86802 * 119.99920 * 6.19395 * 16 14 12 19 19 H 1.48501 * 109.46747 * 84.77930 * 18 16 14 20 20 H 1.48496 * 109.47423 * 204.78189 * 18 16 14 21 21 H 1.48500 * 109.47266 * 324.78631 * 18 16 14 22 22 H 1.09000 * 109.47189 * 59.99809 * 1 2 3 23 23 H 1.08997 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46919 * 299.99994 * 1 2 3 25 25 H 1.09002 * 109.46555 * 240.00694 * 2 1 3 26 26 H 1.09000 * 109.47189 * 120.00191 * 2 1 3 27 27 H 1.09000 * 109.58087 * 136.88469 * 9 6 5 28 28 H 1.08997 * 109.58770 * 257.16406 * 9 6 5 29 29 H 1.09007 * 109.46601 * 69.61923 * 10 9 6 30 30 H 1.08994 * 109.46551 * 189.60082 * 10 9 6 31 31 H 1.08994 * 109.50790 * 189.45834 * 11 10 9 32 32 H 1.08999 * 109.50801 * 309.55398 * 11 10 9 33 33 H 0.97000 * 119.99733 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2922 2.1658 -1.0872 5 6 2.7141 3.3376 -0.7126 6 7 2.7300 3.3796 0.6422 7 6 2.2966 2.1682 1.0925 8 17 2.1250 1.6791 2.7493 9 6 3.1443 4.5373 1.4382 10 6 3.1351 5.7809 0.5425 11 6 3.9159 5.4911 -0.7427 12 6 3.1288 4.4895 -1.5973 13 1 2.2436 4.9736 -2.0097 14 6 3.9997 3.9828 -2.7180 15 1 5.0570 3.8342 -2.5554 16 6 3.4468 3.7090 -3.9510 17 7 4.1790 3.1528 -4.8913 18 14 1.6574 4.1279 -4.2860 19 1 1.5521 5.5480 -4.7074 20 1 1.1375 3.2513 -5.3660 21 1 0.8602 3.9178 -3.0509 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8932 -0.5137 -0.8901 26 1 1.8934 -0.5139 0.8900 27 1 2.4499 4.6784 2.2664 28 1 4.1488 4.3724 1.8276 29 1 2.1065 6.0406 0.2920 30 1 3.6011 6.6125 1.0710 31 1 4.0538 6.4168 -1.3014 32 1 4.8889 5.0698 -0.4903 33 1 3.7898 2.9600 -5.7586 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261006072.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:36 Heat of formation + Delta-G solvation = 14.793492 kcal Electronic energy + Delta-G solvation = -17165.676286 eV Core-core repulsion = 14444.601879 eV Total energy + Delta-G solvation = -2721.074408 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.21395 -37.98409 -37.56831 -35.45812 -34.32590 -33.47585 -30.58822 -28.97866 -27.17717 -24.80208 -23.32095 -23.13929 -20.94755 -19.98127 -19.15121 -17.88986 -16.90709 -16.41090 -15.82752 -15.68184 -15.15486 -14.96394 -14.59955 -14.51258 -14.03106 -13.71091 -13.57403 -13.07526 -12.81241 -12.77846 -12.52853 -12.25693 -12.14765 -11.95947 -11.81402 -11.72027 -11.48578 -11.42881 -10.70352 -10.60324 -10.38078 -8.95556 -8.29688 -6.34823 0.65756 0.96366 1.32376 1.40510 1.50628 2.10783 2.19900 2.38759 3.09012 3.62380 3.64990 3.86948 4.03481 4.18325 4.23332 4.40860 4.51206 4.54186 4.58793 4.60860 4.78758 4.89872 5.03011 5.05482 5.16241 5.26018 5.34263 5.36627 5.43725 5.60994 5.76581 6.21102 6.28468 6.71179 7.31298 7.36957 8.86605 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.020717 B = 0.009460 C = 0.007259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.221115 B = 2959.247931 C = 3856.103265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.038 4.038 3 C 0.000 4.000 4 N -0.514 5.514 5 C 0.244 3.756 6 N -0.461 5.461 7 C -0.004 4.004 8 Cl 0.005 6.995 9 C 0.096 3.904 10 C -0.126 4.126 11 C -0.109 4.109 12 C 0.087 3.913 13 H 0.057 0.943 14 C -0.501 4.501 15 H 0.033 0.967 16 C 0.038 3.962 17 N -0.939 5.939 18 Si 0.938 3.062 19 H -0.255 1.255 20 H -0.294 1.294 21 H -0.259 1.259 22 H 0.034 0.966 23 H 0.083 0.917 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.126 0.874 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.489 2.138 16.471 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.076 4.076 3 C -0.131 4.131 4 N -0.233 5.233 5 C -0.020 4.020 6 N -0.146 5.146 7 C -0.144 4.144 8 Cl 0.033 6.967 9 C -0.024 4.024 10 C -0.163 4.163 11 C -0.147 4.147 12 C 0.067 3.933 13 H 0.075 0.925 14 C -0.538 4.538 15 H 0.052 0.948 16 C -0.161 4.161 17 N -0.577 5.577 18 Si 0.763 3.237 19 H -0.180 1.180 20 H -0.221 1.221 21 H -0.183 1.183 22 H 0.053 0.947 23 H 0.102 0.898 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.110 0.890 27 H 0.127 0.873 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.144 0.856 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.547 1.905 15.764 17.175 hybrid contribution -0.208 -0.123 0.194 0.310 sum -6.755 1.782 15.958 17.420 Atomic orbital electron populations 1.21620 0.93598 1.02632 1.01166 1.19889 0.96806 0.88057 1.02834 1.21149 1.06436 0.98750 0.86756 1.70149 1.19450 1.03584 1.30084 1.24833 0.99497 0.97177 0.80447 1.45683 1.49609 1.11698 1.07634 1.21327 1.15580 0.89687 0.87815 1.98310 1.96624 1.89382 1.12401 1.22323 1.02256 0.83323 0.94539 1.21971 1.02215 0.96570 0.95536 1.21679 0.98215 0.99256 0.95528 1.18076 0.96005 0.87739 0.91504 0.92502 1.20774 0.94241 1.44355 0.94479 0.94825 1.25737 1.01362 0.93069 0.95966 1.70034 1.39059 1.43106 1.05540 0.85867 0.81227 0.78626 0.77991 1.17972 1.22084 1.18340 0.94714 0.89841 0.92384 0.91838 0.89036 0.87279 0.88936 0.90855 0.85629 0.89472 0.92942 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 9.89 71.98 0.71 -2.97 16 2 C -0.04 -1.23 6.32 29.85 0.19 -1.04 16 3 C 0.00 0.02 6.36 41.43 0.26 0.28 16 4 N -0.51 -25.61 11.12 -175.50 -1.95 -27.56 16 5 C 0.24 11.17 6.99 138.20 0.97 12.14 16 6 N -0.46 -16.92 3.14 -502.78 -1.58 -18.50 16 7 C 0.00 -0.14 7.51 83.25 0.63 0.49 16 8 Cl 0.00 0.13 28.78 -2.72 -0.08 0.05 16 9 C 0.10 2.46 6.86 86.47 0.59 3.05 16 10 C -0.13 -3.03 5.94 30.73 0.18 -2.85 16 11 C -0.11 -3.73 5.27 30.78 0.16 -3.57 16 12 C 0.09 4.01 2.20 -12.04 -0.03 3.99 16 13 H 0.06 2.61 5.21 -2.39 -0.01 2.59 16 14 C -0.50 -28.56 8.76 25.60 0.22 -28.34 16 15 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 16 C 0.04 2.26 5.47 84.65 0.46 2.72 16 17 N -0.94 -59.61 13.96 21.45 0.30 -59.31 16 18 Si 0.94 46.42 27.04 68.60 1.85 48.27 16 19 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 20 H -0.29 -14.74 7.11 99.48 0.71 -14.04 16 21 H -0.26 -12.73 6.75 99.48 0.67 -12.06 16 22 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.09 2.51 7.93 -2.39 -0.02 2.49 16 27 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.07 1.77 8.12 -2.38 -0.02 1.75 16 30 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 33 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -72.49 287.40 3.97 -68.53 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: 1.07 Total: 4.64 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: 4.35 Total: -16.11 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -3.23 Total: -105.37 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 1.85 Total: 48.27 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -0.08 Total: 0.05 kcal Total: -72.49 3.97 -68.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261006072.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.319 kcal (2) G-P(sol) polarization free energy of solvation -72.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds