Wall clock time and date at job start Mon Mar 30 2020 06:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47492 * 2 1 4 4 N 1.30807 * 125.71291 * 269.97836 * 3 2 1 5 5 C 1.34455 * 109.34482 * 180.08650 * 4 3 2 6 6 Cl 1.73602 * 126.11386 * 179.97438 * 5 4 3 7 7 C 1.33940 * 107.77868 * 0.02562 * 5 4 3 8 8 N 1.34378 * 125.70776 * 90.00042 * 3 2 1 9 9 C 1.46472 * 128.47140 * 359.80931 * 8 3 2 10 10 C 1.53292 * 108.69063 * 197.28899 * 9 8 3 11 11 H 1.08998 * 109.42915 * 69.24222 * 10 9 8 12 12 C 1.50701 * 109.43038 * 189.15122 * 10 9 8 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 10 9 14 14 C 1.37871 * 119.99694 * 180.27857 * 12 10 9 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 10 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 10 17 17 H 1.48504 * 109.47266 * 60.00049 * 16 14 12 18 18 H 1.48504 * 109.46970 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47383 * 299.99456 * 16 14 12 20 20 C 1.53119 * 109.70946 * 309.22011 * 10 9 8 21 21 C 1.50702 * 128.70944 * 179.83500 * 7 5 4 22 22 H 1.08997 * 109.47411 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46657 * 299.99955 * 1 2 3 24 24 H 1.09002 * 109.47060 * 59.99512 * 1 2 3 25 25 H 1.08996 * 109.46842 * 239.99916 * 2 1 3 26 26 H 1.09002 * 109.47060 * 120.00488 * 2 1 3 27 27 H 1.08995 * 109.60110 * 77.52975 * 9 8 3 28 28 H 1.08994 * 109.60138 * 317.05003 * 9 8 3 29 29 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 30 30 H 1.09004 * 109.49293 * 189.89975 * 20 10 9 31 31 H 1.08993 * 109.50041 * 309.99904 * 20 10 9 32 32 H 1.09002 * 109.74819 * 315.43950 * 21 7 5 33 33 H 1.09000 * 109.74583 * 76.11712 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2873 2.1404 -1.0621 5 6 2.7191 3.3561 -0.6832 6 17 3.1799 4.6537 -1.7404 7 6 2.7313 3.3868 0.6558 8 7 2.2939 2.1601 1.0912 9 6 2.1572 1.7849 2.5004 10 6 2.1523 3.0607 3.3502 11 1 1.2300 3.6130 3.1698 12 6 2.2389 2.6919 4.8088 13 1 2.2916 1.6535 5.1009 14 6 2.2445 3.6798 5.7704 15 7 2.1799 4.9443 5.4147 16 14 2.3440 3.2223 7.5788 17 1 3.5990 2.4694 7.8307 18 1 2.3345 4.4575 8.4031 19 1 1.1782 2.3765 7.9403 20 6 3.3509 3.9362 2.9742 21 6 3.1362 4.5151 1.5690 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.9958 1.1535 2.7937 28 1 1.2216 1.2451 2.6459 29 1 2.1835 5.6393 6.0913 30 1 3.4462 4.7505 3.6926 31 1 4.2590 3.3336 2.9841 32 1 4.0618 4.9654 1.2101 33 1 2.3477 5.2671 1.5972 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261022541.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:42 Heat of formation + Delta-G solvation = 14.070982 kcal Electronic energy + Delta-G solvation = -16933.961356 eV Core-core repulsion = 14212.855618 eV Total energy + Delta-G solvation = -2721.105738 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.42401 -37.99517 -37.51938 -34.97651 -34.57267 -33.01530 -31.35570 -28.46953 -26.92699 -25.10082 -23.92436 -22.71142 -21.39891 -19.79936 -18.62615 -17.61386 -16.90668 -16.63157 -15.70276 -15.43498 -15.01491 -14.91923 -14.86544 -14.63463 -14.22330 -13.46900 -13.30717 -13.03529 -12.80116 -12.66708 -12.55791 -12.33100 -12.29672 -12.06025 -11.95266 -11.74564 -11.40294 -11.00149 -10.96139 -10.50309 -10.36548 -9.16416 -8.14167 -6.30123 0.93408 0.95728 1.45932 1.46677 1.53655 1.82436 1.96066 2.43196 3.14776 3.48480 3.71378 3.97393 4.03529 4.16014 4.27138 4.37676 4.51957 4.53834 4.62074 4.72943 4.74873 4.99588 5.07009 5.09663 5.22869 5.30637 5.36367 5.43590 5.56190 5.76746 5.93866 6.14793 6.28548 6.78852 6.85946 7.39618 8.90469 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.023776 B = 0.006859 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.363886 B = 4081.369232 C = 5085.451061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.034 4.034 3 C 0.219 3.781 4 N -0.514 5.514 5 C 0.025 3.975 6 Cl -0.013 7.013 7 C 0.003 3.997 8 N -0.441 5.441 9 C 0.117 3.883 10 C 0.041 3.959 11 H 0.002 0.998 12 C -0.535 4.535 13 H 0.067 0.933 14 C 0.019 3.981 15 N -0.911 5.911 16 Si 0.957 3.043 17 H -0.270 1.270 18 H -0.289 1.289 19 H -0.270 1.270 20 C -0.109 4.109 21 C -0.040 4.040 22 H 0.095 0.905 23 H 0.043 0.957 24 H 0.050 0.950 25 H 0.107 0.893 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.263 0.737 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.088 0.912 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.137 -6.772 -7.425 10.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.044 4.044 4 N -0.236 5.236 5 C -0.129 4.129 6 Cl 0.015 6.985 7 C -0.115 4.115 8 N -0.123 5.123 9 C -0.003 4.003 10 C 0.022 3.978 11 H 0.020 0.980 12 C -0.574 4.574 13 H 0.085 0.915 14 C -0.181 4.181 15 N -0.550 5.550 16 Si 0.782 3.218 17 H -0.195 1.195 18 H -0.214 1.214 19 H -0.195 1.195 20 C -0.147 4.147 21 C -0.079 4.079 22 H 0.113 0.887 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.126 0.874 26 H 0.117 0.883 27 H 0.107 0.893 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.107 0.893 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.215 -6.806 -8.099 10.581 hybrid contribution 0.183 0.803 1.576 1.778 sum -0.032 -6.003 -6.523 8.865 Atomic orbital electron populations 1.21705 0.93049 1.03651 1.01511 1.20179 0.97069 0.84559 1.05505 1.23741 1.02901 0.97785 0.79999 1.70001 1.20881 1.02931 1.29785 1.20223 1.12423 0.92267 0.87971 1.98292 1.90784 1.43596 1.65866 1.20999 1.06993 0.90186 0.93294 1.45617 1.47039 1.10735 1.08874 1.22319 1.03182 1.00082 0.74725 1.18864 0.94511 0.90685 0.93707 0.97951 1.21280 1.51713 0.93572 0.90789 0.91474 1.25678 0.94410 0.94867 1.03099 1.69975 1.50117 1.00052 1.34843 0.85629 0.78947 0.77449 0.79750 1.19494 1.21436 1.19529 1.21604 0.97812 1.01101 0.94188 1.20268 1.01291 0.92817 0.93474 0.88664 0.93779 0.93120 0.87421 0.88339 0.89281 0.88541 0.92749 0.89999 0.94482 0.89347 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.89 71.98 0.71 -2.24 16 2 C -0.03 -0.80 6.29 29.85 0.19 -0.61 16 3 C 0.22 7.34 7.19 138.25 0.99 8.34 16 4 N -0.51 -19.41 11.27 -179.81 -2.03 -21.44 16 5 C 0.02 0.96 7.70 83.31 0.64 1.60 16 6 Cl -0.01 -0.44 29.19 -2.72 -0.08 -0.52 16 7 C 0.00 0.13 6.58 40.72 0.27 0.40 16 8 N -0.44 -16.29 3.13 -499.98 -1.57 -17.86 16 9 C 0.12 4.30 5.84 86.48 0.51 4.81 16 10 C 0.04 1.87 2.10 -11.40 -0.02 1.85 16 11 H 0.00 0.12 8.11 -2.39 -0.02 0.10 16 12 C -0.54 -26.29 8.55 25.60 0.22 -26.08 16 13 H 0.07 3.12 7.74 -2.91 -0.02 3.10 16 14 C 0.02 0.99 5.27 84.65 0.45 1.43 16 15 N -0.91 -48.90 11.29 21.45 0.24 -48.66 16 16 Si 0.96 40.15 29.54 68.60 2.03 42.18 16 17 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 18 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 20 C -0.11 -4.82 5.12 30.80 0.16 -4.66 16 21 C -0.04 -1.58 6.19 30.01 0.19 -1.40 16 22 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 24 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.10 1.94 7.95 -2.39 -0.02 1.92 16 27 H 0.09 3.07 8.12 -2.39 -0.02 3.05 16 28 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 29 H 0.26 13.59 8.31 -92.71 -0.77 12.82 16 30 H 0.08 4.10 5.86 -2.38 -0.01 4.08 16 31 H 0.04 1.60 8.12 -2.39 -0.02 1.58 16 32 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 33 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -57.44 287.67 3.99 -53.45 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 1.10 Total: 9.40 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: 4.29 Total: -16.56 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -3.35 Total: -87.95 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -0.08 Total: -0.52 kcal Total: -57.44 3.99 -53.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261022541.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.522 kcal (2) G-P(sol) polarization free energy of solvation -57.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds