Wall clock time and date at job start Mon Mar 30 2020 06:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 N 1.30808 * 125.71048 * 90.02959 * 3 2 1 5 5 C 1.34461 * 109.34038 * 179.97438 * 4 3 2 6 6 Cl 1.73600 * 126.11084 * 180.02562 * 5 4 3 7 7 C 1.33933 * 107.77961 * 359.97438 * 5 4 3 8 8 N 1.34377 * 125.70979 * 269.71935 * 3 2 1 9 9 C 1.46480 * 128.46473 * 0.88028 * 8 3 2 10 10 C 1.53288 * 108.75694 * 162.21226 * 9 8 3 11 11 H 1.08999 * 109.39009 * 290.50302 * 10 9 8 12 12 C 1.50697 * 109.42887 * 170.62458 * 10 9 8 13 13 H 1.08001 * 120.00573 * 359.75722 * 12 10 9 14 14 C 1.37884 * 120.00030 * 179.75055 * 12 10 9 15 15 N 1.31514 * 119.99513 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00166 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47018 * 89.99934 * 16 14 12 18 18 H 1.48501 * 109.47120 * 210.00472 * 16 14 12 19 19 H 1.48501 * 109.47163 * 330.00329 * 16 14 12 20 20 C 1.53109 * 109.71337 * 50.55492 * 10 9 8 21 21 C 1.50710 * 128.71201 * 180.08545 * 7 5 4 22 22 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 27 27 H 1.09006 * 109.75235 * 42.32005 * 9 8 3 28 28 H 1.09001 * 109.37976 * 281.88625 * 9 8 3 29 29 H 0.97004 * 119.99372 * 179.97438 * 15 14 12 30 30 H 1.08997 * 109.49881 * 170.10031 * 20 10 9 31 31 H 1.08997 * 109.52685 * 50.01272 * 20 10 9 32 32 H 1.08992 * 109.74674 * 283.90494 * 21 7 5 33 33 H 1.08998 * 109.74440 * 44.57742 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2873 2.1405 1.0621 5 6 2.7176 3.3567 0.6832 6 17 3.1779 4.6545 1.7404 7 6 2.7288 3.3877 -0.6558 8 7 2.2987 2.1586 -1.0911 9 6 2.1555 1.7856 -2.5004 10 6 2.1485 3.0617 -3.3497 11 1 1.2255 3.6122 -3.1681 12 6 2.2339 2.6934 -4.8084 13 1 2.2917 1.6554 -5.1009 14 6 2.2382 3.6817 -5.7699 15 7 2.1681 4.9458 -5.4138 16 14 2.3433 3.2252 -7.5782 17 1 0.9739 3.0456 -8.1238 18 1 3.0348 4.3082 -8.3227 19 1 3.1049 1.9589 -7.7256 20 6 3.3466 3.9382 -2.9747 21 6 3.1305 4.5173 -1.5691 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.2202 1.2449 -2.6451 28 1 2.9945 1.1550 -2.7947 29 1 2.1715 5.6411 -6.0902 30 1 3.4403 4.7528 -3.6929 31 1 4.2556 3.3369 -2.9858 32 1 2.3404 5.2675 -1.5963 33 1 4.0553 4.9694 -1.2109 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261022544.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:46 Heat of formation + Delta-G solvation = 27.042646 kcal Electronic energy + Delta-G solvation = -16933.401643 eV Core-core repulsion = 14212.858398 eV Total energy + Delta-G solvation = -2720.543244 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.96548 -36.37003 -36.07090 -33.77086 -32.79646 -31.54624 -29.69387 -27.00858 -25.16486 -23.81245 -22.39614 -21.11151 -19.97485 -18.19746 -16.90739 -16.06738 -15.38853 -14.83144 -14.45001 -13.95441 -13.70836 -13.47744 -13.30979 -13.00623 -12.71146 -12.29826 -11.71908 -11.59085 -11.25680 -11.11199 -11.03841 -11.01845 -10.79198 -10.76243 -10.33398 -10.00201 -9.67256 -9.46057 -9.15719 -8.93338 -8.53518 -7.70367 -6.22465 -4.32341 2.38615 2.41668 3.17757 3.25278 3.26232 3.27012 3.40976 4.25352 4.70864 5.04551 5.07971 5.32886 5.36288 5.54838 5.60925 5.65085 5.76759 5.86980 6.00555 6.10053 6.16155 6.24569 6.29686 6.37106 6.78546 6.80777 6.92490 7.05592 7.44606 7.57939 7.66547 7.80880 8.10882 8.30375 8.69781 9.34321 10.83138 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.023776 B = 0.006859 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.352387 B = 4081.384136 C = 5084.613137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.033 4.033 3 C 0.209 3.791 4 N -0.492 5.492 5 C 0.032 3.968 6 Cl -0.030 7.030 7 C 0.028 3.972 8 N -0.434 5.434 9 C 0.106 3.894 10 C 0.041 3.959 11 H 0.037 0.963 12 C -0.522 4.522 13 H 0.060 0.940 14 C 0.067 3.933 15 N -0.883 5.883 16 Si 0.897 3.103 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.117 4.117 21 C -0.051 4.051 22 H 0.060 0.940 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.264 0.736 30 H 0.108 0.892 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.125 -4.958 7.281 8.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.072 4.072 3 C -0.054 4.054 4 N -0.213 5.213 5 C -0.122 4.122 6 Cl -0.002 7.002 7 C -0.091 4.091 8 N -0.115 5.115 9 C -0.014 4.014 10 C 0.023 3.977 11 H 0.055 0.945 12 C -0.561 4.561 13 H 0.078 0.922 14 C -0.136 4.136 15 N -0.520 5.520 16 Si 0.725 3.275 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.155 4.155 21 C -0.089 4.089 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.109 0.891 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.127 0.873 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.191 -5.000 7.947 9.391 hybrid contribution 0.196 0.251 -1.589 1.621 sum 0.004 -4.748 6.358 7.935 Atomic orbital electron populations 1.21734 0.94105 1.01926 1.02700 1.19890 0.96321 0.87231 1.03736 1.22788 1.05018 0.96584 0.80995 1.69941 1.19644 1.02682 1.29041 1.19970 1.12925 0.91631 0.87681 1.98294 1.90992 1.44411 1.66476 1.20972 1.05618 0.89480 0.93001 1.45570 1.46653 1.10585 1.08673 1.22527 1.01798 1.01978 0.75141 1.18990 0.95977 0.89173 0.93606 0.94474 1.20934 1.52276 0.93262 0.89608 0.92199 1.24936 0.94497 0.94892 0.99307 1.69854 1.49158 0.99243 1.33789 0.86508 0.78296 0.78280 0.84457 1.20520 1.21026 1.19798 1.21803 0.98151 1.02084 0.93427 1.20445 1.00852 0.92881 0.94764 0.92041 0.92506 0.91831 0.89085 0.90250 0.90176 0.90457 0.92550 0.87342 0.94418 0.90253 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.89 37.16 0.37 -1.37 16 2 C -0.03 -0.43 6.29 -27.88 -0.18 -0.60 16 3 C 0.21 3.70 7.19 -155.76 -1.12 2.58 16 4 N -0.49 -9.62 11.27 -8.18 -0.09 -9.71 16 5 C 0.03 0.63 7.70 -17.91 -0.14 0.49 16 6 Cl -0.03 -0.50 29.19 -51.86 -1.51 -2.02 16 7 C 0.03 0.55 6.58 -81.65 -0.54 0.02 16 8 N -0.43 -8.26 3.14 -109.37 -0.34 -8.60 16 9 C 0.11 2.01 5.84 -3.90 -0.02 1.99 16 10 C 0.04 0.94 2.09 -91.57 -0.19 0.74 16 11 H 0.04 0.94 8.11 -51.93 -0.42 0.52 16 12 C -0.52 -12.90 8.55 -34.44 -0.29 -13.19 16 13 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 14 C 0.07 1.68 5.27 -17.82 -0.09 1.59 16 15 N -0.88 -23.23 11.30 55.43 0.63 -22.60 16 16 Si 0.90 19.71 29.54 -169.99 -5.02 14.69 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 C -0.12 -2.54 5.12 -26.39 -0.14 -2.68 16 21 C -0.05 -1.00 6.19 -27.59 -0.17 -1.17 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.08 0.93 7.95 -51.93 -0.41 0.52 16 27 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 29 H 0.26 6.67 8.31 -40.82 -0.34 6.34 16 30 H 0.11 2.63 5.87 -51.93 -0.30 2.33 16 31 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 32 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 287.69 15.07 4.34 4.34 Total: -1.00 -27.06 287.69 -9.00 -36.06 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -4.48 Total: -0.55 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -2.51 Total: -11.60 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.19 Total: -40.91 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.51 Total: -2.02 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.06 -9.00 -36.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261022544.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.106 kcal (2) G-P(sol) polarization free energy of solvation -27.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds