Wall clock time and date at job start Mon Mar 30 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99955 * 2 1 4 4 H 1.48507 * 109.46807 * 240.00112 * 3 2 1 5 5 H 1.48497 * 109.47048 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47150 * 120.00259 * 3 2 1 7 7 C 1.37879 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99729 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00355 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47173 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47164 * 174.99519 * 10 9 7 12 12 C 1.52999 * 109.46626 * 59.99702 * 11 10 9 13 13 C 1.52997 * 109.46991 * 60.00378 * 12 11 10 14 14 F 1.39901 * 109.47234 * 59.99869 * 13 12 11 15 15 C 1.53002 * 109.47143 * 179.97438 * 13 12 11 16 16 F 1.39903 * 109.47462 * 179.97438 * 15 13 12 17 17 F 1.39905 * 109.47460 * 300.00017 * 15 13 12 18 18 F 1.39902 * 109.47274 * 59.99861 * 15 13 12 19 19 C 1.52996 * 109.47131 * 299.99311 * 13 12 11 20 20 C 1.52997 * 109.47232 * 294.99618 * 10 9 7 21 21 H 0.97002 * 120.00259 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47503 * 59.99600 * 9 7 2 23 23 H 1.09006 * 109.46330 * 299.99871 * 9 7 2 24 24 H 1.09001 * 109.46922 * 54.99768 * 10 9 7 25 25 H 1.08993 * 109.46955 * 180.02562 * 11 10 9 26 26 H 1.09000 * 109.47050 * 300.00004 * 11 10 9 27 27 H 1.09002 * 109.46719 * 180.02562 * 12 11 10 28 28 H 1.08993 * 109.47839 * 299.99931 * 12 11 10 29 29 H 1.08996 * 109.47452 * 300.00000 * 19 13 12 30 30 H 1.09000 * 109.47054 * 180.02562 * 19 13 12 31 31 H 1.09002 * 109.47153 * 60.00008 * 20 10 9 32 32 H 1.08996 * 109.46952 * 180.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4844 -4.9836 0.1264 12 6 0.5241 -5.1335 -1.0552 13 6 1.3188 -5.1251 -2.3625 14 9 2.2279 -6.1885 -2.3626 15 6 0.3585 -5.2757 -3.5441 16 9 1.0851 -5.2674 -4.7396 17 9 -0.3369 -6.4842 -3.4289 18 9 -0.5510 -4.2126 -3.5443 19 6 2.0795 -3.8037 -2.4884 20 6 3.0400 -3.6536 -1.3068 21 1 -0.4850 0.8400 0.0004 22 1 0.6246 -2.5572 -0.8896 23 1 0.6240 -2.5566 0.8904 24 1 2.9294 -3.5551 0.8423 25 1 2.1928 -5.8120 0.1268 26 1 0.9183 -4.9896 1.0578 27 1 -0.0183 -6.0748 -0.9653 28 1 -0.1843 -4.3052 -1.0552 29 1 1.3713 -2.9752 -2.4884 30 1 2.6454 -3.7975 -3.4200 31 1 3.5820 -2.7122 -1.3965 32 1 3.7479 -4.4823 -1.3070 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261043900.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:19 Heat of formation + Delta-G solvation = -230.934411 kcal Electronic energy + Delta-G solvation = -20420.700158 eV Core-core repulsion = 16686.484322 eV Total energy + Delta-G solvation = -3734.215836 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.15925 -47.98906 -47.57475 -47.31763 -38.10913 -33.10874 -31.46277 -30.64604 -27.65982 -25.29305 -23.04376 -22.54314 -21.29400 -18.70783 -18.22435 -18.09891 -17.69028 -16.33293 -15.61518 -15.36214 -14.59802 -14.37599 -14.34182 -14.26584 -13.97016 -13.82425 -13.68188 -13.66926 -13.34401 -12.95349 -12.29464 -12.10635 -11.92206 -11.68213 -11.39501 -11.10831 -10.93277 -10.62383 -10.39645 -10.26399 -9.91793 -9.60357 -9.09048 -8.98806 -8.36467 -6.02823 -4.04661 2.60584 3.30729 3.36206 3.37933 3.63396 3.93138 4.01516 4.43324 4.54671 4.71451 4.87760 5.32692 5.45544 5.49923 5.64089 5.67065 5.80330 5.90789 6.15502 6.27927 6.37312 6.49368 6.55396 6.76902 6.89095 7.12409 7.63465 7.74891 7.96115 8.39370 9.01187 9.59392 11.08079 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.029635 B = 0.007020 C = 0.006592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.586943 B = 3987.563915 C = 4246.733911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.091 4.091 11 C -0.109 4.109 12 C -0.142 4.142 13 C 0.092 3.908 14 F -0.181 7.181 15 C 0.433 3.567 16 F -0.179 7.179 17 F -0.180 7.180 18 F -0.165 7.165 19 C -0.141 4.141 20 C -0.097 4.097 21 H 0.261 0.739 22 H 0.023 0.977 23 H 0.016 0.984 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.104 0.896 29 H 0.110 0.890 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.523 -10.566 -4.850 11.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.109 4.109 11 C -0.146 4.146 12 C -0.179 4.179 13 C 0.073 3.927 14 F -0.162 7.162 15 C 0.378 3.622 16 F -0.160 7.160 17 F -0.161 7.161 18 F -0.147 7.147 19 C -0.179 4.179 20 C -0.134 4.134 21 H 0.070 0.930 22 H 0.041 0.959 23 H 0.034 0.966 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.123 0.877 29 H 0.129 0.871 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.366 -10.481 -4.881 11.642 hybrid contribution 0.250 0.818 -0.338 0.919 sum 1.617 -9.663 -5.219 11.101 Atomic orbital electron populations 1.69936 1.05980 1.26701 1.50695 1.24998 0.94793 0.99103 0.95420 0.86728 0.79646 0.83467 0.78586 1.20289 1.21375 1.20323 1.21197 0.92933 0.90917 1.50615 0.92659 1.19259 0.93675 0.90990 0.97373 1.21301 0.98258 0.94872 0.96473 1.21548 0.97659 0.98900 0.96491 1.22220 0.99194 1.04505 0.91998 1.22159 0.88244 0.88444 0.93891 1.92899 1.68106 1.58012 1.97156 1.21177 0.81701 0.74172 0.85127 1.93183 1.77302 1.96161 1.49345 1.93178 1.80820 1.46093 1.96055 1.93239 1.68523 1.56318 1.96595 1.22251 1.00798 0.93722 1.01098 1.21383 0.96684 1.02018 0.93352 0.92958 0.95916 0.96563 0.91592 0.92395 0.91086 0.90622 0.87744 0.87131 0.90719 0.89826 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -13.59 8.41 -34.44 -0.29 -13.88 16 8 H 0.06 1.41 7.06 -52.48 -0.37 1.04 16 9 C 0.02 0.56 3.74 -27.89 -0.10 0.45 16 10 C -0.09 -1.69 2.61 -90.62 -0.24 -1.93 16 11 C -0.11 -1.73 5.33 -26.73 -0.14 -1.87 16 12 C -0.14 -2.21 4.48 -26.73 -0.12 -2.33 16 13 C 0.09 1.46 0.69 -90.62 -0.06 1.39 16 14 F -0.18 -2.89 15.73 2.25 0.04 -2.85 16 15 C 0.43 6.71 2.44 37.16 0.09 6.80 16 16 F -0.18 -2.75 16.78 2.25 0.04 -2.71 16 17 F -0.18 -2.71 16.78 2.25 0.04 -2.67 16 18 F -0.17 -2.71 16.28 2.25 0.04 -2.67 16 19 C -0.14 -2.37 4.48 -26.73 -0.12 -2.49 16 20 C -0.10 -1.68 5.14 -26.73 -0.14 -1.82 16 21 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 22 H 0.02 0.55 4.82 -51.93 -0.25 0.30 16 23 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 25 H 0.06 0.85 7.80 -51.93 -0.41 0.45 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.08 1.04 7.80 -51.93 -0.41 0.64 16 28 H 0.10 1.77 6.20 -51.93 -0.32 1.45 16 29 H 0.11 2.08 5.98 -51.93 -0.31 1.77 16 30 H 0.07 1.14 7.80 -51.93 -0.41 0.73 16 31 H 0.08 1.54 6.95 -51.93 -0.36 1.18 16 32 H 0.05 0.79 7.80 -51.93 -0.41 0.38 16 LS Contribution 267.44 15.07 4.03 4.03 Total: -1.00 -27.41 267.44 -4.96 -32.38 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -3.64 Total: -2.26 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -1.22 Total: -14.18 kcal Atomic # 7 Polarization: -25.74 SS G_CDS: 0.74 Total: -25.00 kcal Atomic # 9 Polarization: -11.06 SS G_CDS: 0.15 Total: -10.91 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.41 -4.96 -32.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261043900.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.558 kcal (2) G-P(sol) polarization free energy of solvation -27.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds