Wall clock time and date at job start Mon Mar 30 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99955 * 2 1 4 4 H 1.48507 * 109.46807 * 240.00112 * 3 2 1 5 5 H 1.48497 * 109.47048 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47150 * 120.00259 * 3 2 1 7 7 C 1.37879 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99729 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00355 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47173 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47164 * 174.99519 * 10 9 7 12 12 C 1.52999 * 109.46626 * 59.99702 * 11 10 9 13 13 C 1.52997 * 109.46991 * 60.00378 * 12 11 10 14 14 F 1.39901 * 109.47234 * 59.99869 * 13 12 11 15 15 C 1.53002 * 109.47143 * 179.97438 * 13 12 11 16 16 F 1.39903 * 109.47462 * 179.97438 * 15 13 12 17 17 F 1.39905 * 109.47460 * 300.00017 * 15 13 12 18 18 F 1.39902 * 109.47274 * 59.99861 * 15 13 12 19 19 C 1.52996 * 109.47131 * 299.99311 * 13 12 11 20 20 C 1.52997 * 109.47232 * 294.99618 * 10 9 7 21 21 H 0.97002 * 120.00259 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47503 * 59.99600 * 9 7 2 23 23 H 1.09006 * 109.46330 * 299.99871 * 9 7 2 24 24 H 1.09001 * 109.46922 * 54.99768 * 10 9 7 25 25 H 1.08993 * 109.46955 * 180.02562 * 11 10 9 26 26 H 1.09000 * 109.47050 * 300.00004 * 11 10 9 27 27 H 1.09002 * 109.46719 * 180.02562 * 12 11 10 28 28 H 1.08993 * 109.47839 * 299.99931 * 12 11 10 29 29 H 1.08996 * 109.47452 * 300.00000 * 19 13 12 30 30 H 1.09000 * 109.47054 * 180.02562 * 19 13 12 31 31 H 1.09002 * 109.47153 * 60.00008 * 20 10 9 32 32 H 1.08996 * 109.46952 * 180.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4844 -4.9836 0.1264 12 6 0.5241 -5.1335 -1.0552 13 6 1.3188 -5.1251 -2.3625 14 9 2.2279 -6.1885 -2.3626 15 6 0.3585 -5.2757 -3.5441 16 9 1.0851 -5.2674 -4.7396 17 9 -0.3369 -6.4842 -3.4289 18 9 -0.5510 -4.2126 -3.5443 19 6 2.0795 -3.8037 -2.4884 20 6 3.0400 -3.6536 -1.3068 21 1 -0.4850 0.8400 0.0004 22 1 0.6246 -2.5572 -0.8896 23 1 0.6240 -2.5566 0.8904 24 1 2.9294 -3.5551 0.8423 25 1 2.1928 -5.8120 0.1268 26 1 0.9183 -4.9896 1.0578 27 1 -0.0183 -6.0748 -0.9653 28 1 -0.1843 -4.3052 -1.0552 29 1 1.3713 -2.9752 -2.4884 30 1 2.6454 -3.7975 -3.4200 31 1 3.5820 -2.7122 -1.3965 32 1 3.7479 -4.4823 -1.3070 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261043900.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:19 Heat of formation + Delta-G solvation = -244.279046 kcal Electronic energy + Delta-G solvation = -20421.278825 eV Core-core repulsion = 16686.484322 eV Total energy + Delta-G solvation = -3734.794502 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -51.40826 -49.26288 -48.80071 -48.58087 -39.54477 -35.01229 -33.04574 -31.97787 -29.41869 -26.76171 -24.83256 -23.91909 -22.65437 -20.05763 -19.46968 -19.37033 -19.12203 -18.30953 -16.97140 -16.67193 -16.45082 -15.79090 -15.62139 -15.57083 -15.21663 -15.13559 -14.93605 -14.91843 -14.85807 -14.38291 -13.91741 -13.85194 -13.27139 -13.09203 -12.94405 -12.75042 -12.65495 -12.28620 -11.98824 -11.90563 -11.46285 -11.10633 -10.78185 -10.76827 -10.43300 -8.11867 -6.19126 1.34704 1.43445 1.43938 1.51390 2.38389 2.45475 2.66751 2.74914 3.22269 3.25508 3.43733 3.59331 4.10960 4.16954 4.26452 4.30950 4.50375 4.56379 4.85806 4.90665 4.97376 5.14372 5.15417 5.22838 5.44556 5.53074 5.65718 5.86807 5.97341 6.37057 6.97449 7.48587 8.98995 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.029635 B = 0.007020 C = 0.006592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.586943 B = 3987.563915 C = 4246.733911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.950 3.050 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.270 1.270 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.030 3.970 10 C -0.087 4.087 11 C -0.103 4.103 12 C -0.142 4.142 13 C 0.099 3.901 14 F -0.177 7.177 15 C 0.436 3.564 16 F -0.177 7.177 17 F -0.175 7.175 18 F -0.173 7.173 19 C -0.141 4.141 20 C -0.093 4.093 21 H 0.260 0.740 22 H 0.010 0.990 23 H -0.013 1.013 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.718 -11.476 -5.121 12.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.775 3.225 4 H -0.194 1.194 5 H -0.215 1.215 6 H -0.196 1.196 7 C -0.564 4.564 8 H 0.079 0.921 9 C -0.007 4.007 10 C -0.105 4.105 11 C -0.141 4.141 12 C -0.179 4.179 13 C 0.079 3.921 14 F -0.157 7.157 15 C 0.381 3.619 16 F -0.158 7.158 17 F -0.156 7.156 18 F -0.155 7.155 19 C -0.178 4.178 20 C -0.131 4.131 21 H 0.068 0.932 22 H 0.028 0.972 23 H 0.005 0.995 24 H 0.083 0.917 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.117 0.883 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.579 -11.400 -5.153 12.773 hybrid contribution -0.125 1.068 -0.254 1.105 sum 2.454 -10.332 -5.407 11.917 Atomic orbital electron populations 1.70069 1.07502 1.27330 1.52312 1.25813 0.95554 1.02669 0.95466 0.85734 0.78406 0.79333 0.78981 1.19374 1.21539 1.19559 1.21653 0.93427 0.92160 1.49209 0.92144 1.19139 0.94048 0.92217 0.95274 1.21187 0.97447 0.94522 0.97375 1.21498 0.97920 0.97773 0.96865 1.22210 0.98957 1.04946 0.91828 1.21998 0.88143 0.87930 0.94045 1.92909 1.67957 1.57684 1.97156 1.21094 0.81558 0.74122 0.85082 1.93187 1.77222 1.96151 1.49237 1.93189 1.80709 1.45677 1.96031 1.93231 1.68811 1.56796 1.96624 1.22174 1.00387 0.93519 1.01725 1.21329 0.96825 1.02285 0.92625 0.93169 0.97178 0.99494 0.91713 0.90140 0.90645 0.88313 0.89679 0.89714 0.89130 0.91240 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.73 13.29 21.45 0.28 -54.44 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.95 43.07 29.54 68.60 2.03 45.10 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.53 -27.77 8.41 25.60 0.22 -27.55 16 8 H 0.06 3.06 7.06 -2.91 -0.02 3.04 16 9 C 0.03 1.43 3.74 29.85 0.11 1.54 16 10 C -0.09 -3.16 2.61 -10.79 -0.03 -3.19 16 11 C -0.10 -3.09 5.33 30.60 0.16 -2.93 16 12 C -0.14 -4.20 4.48 30.59 0.14 -4.06 16 13 C 0.10 2.93 0.69 -10.79 -0.01 2.92 16 14 F -0.18 -5.07 15.73 44.97 0.71 -4.36 16 15 C 0.44 12.85 2.44 71.98 0.18 13.03 16 16 F -0.18 -5.13 16.78 44.97 0.75 -4.37 16 17 F -0.17 -4.89 16.78 44.97 0.75 -4.14 16 18 F -0.17 -5.60 16.28 44.97 0.73 -4.87 16 19 C -0.14 -4.54 4.48 30.59 0.14 -4.40 16 20 C -0.09 -3.09 5.14 30.59 0.16 -2.93 16 21 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 22 H 0.01 0.50 4.82 -2.39 -0.01 0.49 16 23 H -0.01 -0.71 8.14 -2.38 -0.02 -0.72 16 24 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.08 2.09 7.80 -2.39 -0.02 2.07 16 26 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.10 2.47 7.80 -2.39 -0.02 2.45 16 28 H 0.08 2.88 6.20 -2.39 -0.01 2.87 16 29 H 0.08 3.22 5.98 -2.39 -0.01 3.20 16 30 H 0.09 2.61 7.80 -2.39 -0.02 2.59 16 31 H 0.07 2.49 6.95 -2.39 -0.02 2.47 16 32 H 0.07 2.12 7.80 -2.39 -0.02 2.10 16 Total: -1.00 -57.68 267.44 7.92 -49.76 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: 1.14 Total: 4.31 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: 1.52 Total: -26.99 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.28 Total: -54.44 kcal Atomic # 9 Polarization: -20.69 SS G_CDS: 2.95 Total: -17.74 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -57.68 7.92 -49.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261043900.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.523 kcal (2) G-P(sol) polarization free energy of solvation -57.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds