Wall clock time and date at job start Mon Mar 30 2020 05:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46884 * 2 1 4 4 N 1.34333 * 125.96621 * 269.97404 * 3 2 1 5 5 C 1.29972 * 109.25350 * 180.02562 * 4 3 2 6 6 N 1.35629 * 108.63904 * 359.91601 * 5 4 3 7 7 C 1.34982 * 125.96825 * 90.00128 * 3 2 1 8 8 Cl 1.73599 * 126.66162 * 0.02562 * 7 3 2 9 9 C 1.46474 * 124.84289 * 180.13408 * 6 5 4 10 10 C 1.53265 * 108.78288 * 17.14641 * 9 6 5 11 11 H 1.08998 * 109.46175 * 69.60941 * 10 9 6 12 12 C 1.50701 * 109.46305 * 189.58965 * 10 9 6 13 13 H 1.08002 * 119.99881 * 120.03189 * 12 10 9 14 14 C 1.37872 * 120.00566 * 300.03642 * 12 10 9 15 15 N 1.31514 * 120.00342 * 180.02562 * 14 12 10 16 16 Si 1.86807 * 119.99780 * 359.97438 * 14 12 10 17 17 H 1.48502 * 109.47134 * 90.00241 * 16 14 12 18 18 H 1.48506 * 109.46978 * 210.00509 * 16 14 12 19 19 H 1.48503 * 109.47081 * 330.00078 * 16 14 12 20 20 C 1.53144 * 109.50484 * 309.60266 * 10 9 6 21 21 C 1.51051 * 127.46514 * 179.97438 * 5 4 3 22 22 H 1.09001 * 109.46780 * 60.00328 * 1 2 3 23 23 H 1.09002 * 109.47096 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47375 * 300.00248 * 1 2 3 25 25 H 1.08992 * 109.46956 * 239.99902 * 2 1 3 26 26 H 1.09001 * 109.46780 * 119.99672 * 2 1 3 27 27 H 1.08994 * 109.58558 * 257.36095 * 9 6 5 28 28 H 1.08995 * 109.58314 * 136.93342 * 9 6 5 29 29 H 0.96998 * 119.99861 * 179.97438 * 15 14 12 30 30 H 1.09000 * 109.50828 * 309.58760 * 20 10 9 31 31 H 1.09003 * 109.50668 * 189.45679 * 20 10 9 32 32 H 1.09002 * 109.71670 * 76.22936 * 21 5 4 33 33 H 1.09001 * 109.71531 * 315.62952 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2957 2.1645 -1.0872 5 6 2.7110 3.3380 -0.7135 6 7 2.7242 3.3817 0.6420 7 6 2.2966 2.1683 1.0925 8 17 2.1244 1.6794 2.7493 9 6 3.1310 4.5420 1.4380 10 6 3.1162 5.7851 0.5416 11 1 2.0866 6.0388 0.2894 12 6 3.7531 6.9389 1.2725 13 1 4.6291 7.4201 0.8631 14 6 3.2177 7.3802 2.4639 15 7 3.7732 8.3874 3.1015 16 14 1.7023 6.5483 3.1719 17 1 2.1189 5.4326 4.0588 18 1 0.9157 7.5355 3.9543 19 1 0.8675 6.0157 2.0652 20 6 3.9004 5.4990 -0.7424 21 6 3.1203 4.4924 -1.5975 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 4.1370 4.3839 1.8267 28 1 2.4348 4.6799 2.2652 29 1 3.3963 8.6981 3.9395 30 1 4.8752 5.0826 -0.4884 31 1 4.0339 6.4252 -1.3014 32 1 2.2328 4.9712 -2.0114 33 1 3.7534 4.1291 -2.4071 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261070729.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:20 Heat of formation + Delta-G solvation = 34.293486 kcal Electronic energy + Delta-G solvation = -17033.123226 eV Core-core repulsion = 14312.894402 eV Total energy + Delta-G solvation = -2720.228824 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.05162 -36.81327 -36.44130 -33.68939 -32.74982 -32.32600 -29.40444 -27.75936 -25.17289 -23.69437 -22.91618 -21.07164 -19.81788 -18.56669 -17.10855 -16.69355 -15.64054 -14.77878 -14.60707 -14.34784 -13.76758 -13.58058 -13.51603 -13.29574 -12.73958 -12.39989 -12.07836 -11.88394 -11.42816 -11.37264 -11.23321 -11.04766 -10.88488 -10.67841 -10.47662 -10.08104 -9.88186 -9.56954 -9.46880 -9.05085 -8.83745 -7.84215 -6.35271 -4.38119 1.93744 2.17389 3.04105 3.14663 3.18356 3.22711 3.38932 4.13256 4.51812 4.89088 5.08627 5.09760 5.34884 5.41988 5.50621 5.54134 5.71337 5.79344 5.85619 5.91613 5.97087 6.03988 6.20398 6.30345 6.32537 6.39674 6.65271 6.80215 6.86183 7.06334 7.28766 7.50768 8.22057 8.29098 8.69567 9.23965 10.77025 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.024998 B = 0.008432 C = 0.006854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.827364 B = 3319.829705 C = 4084.291159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.035 4.035 3 C 0.022 3.978 4 N -0.487 5.487 5 C 0.236 3.764 6 N -0.439 5.439 7 C 0.010 3.990 8 Cl -0.021 7.021 9 C 0.089 3.911 10 C 0.006 3.994 11 H 0.040 0.960 12 C -0.517 4.517 13 H 0.085 0.915 14 C 0.078 3.922 15 N -0.885 5.885 16 Si 0.864 3.136 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.264 1.264 20 C -0.107 4.107 21 C -0.037 4.037 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.269 0.731 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.718 -12.421 -4.361 13.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 C -0.110 4.110 4 N -0.206 5.206 5 C -0.027 4.027 6 N -0.122 5.122 7 C -0.132 4.132 8 Cl 0.007 6.993 9 C -0.031 4.031 10 C -0.013 4.013 11 H 0.058 0.942 12 C -0.555 4.555 13 H 0.103 0.897 14 C -0.126 4.126 15 N -0.522 5.522 16 Si 0.692 3.308 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.189 1.189 20 C -0.145 4.145 21 C -0.076 4.076 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.775 -12.437 -4.720 13.828 hybrid contribution -0.747 -0.094 1.921 2.063 sum -4.522 -12.532 -2.799 13.613 Atomic orbital electron populations 1.21701 0.94951 1.01222 1.02208 1.19768 0.95660 0.89303 1.02611 1.20440 1.06652 0.97471 0.86457 1.70015 1.19264 1.02291 1.29049 1.23281 1.02529 0.95861 0.81018 1.45761 1.47247 1.10955 1.08198 1.21387 1.14938 0.89709 0.87184 1.98339 1.96624 1.89432 1.14893 1.23276 1.00779 0.83579 0.95511 1.19519 0.98032 0.91337 0.92438 0.94172 1.20871 1.14944 1.13303 1.06376 0.89693 1.25021 0.96349 0.94590 0.96654 1.69848 1.40216 1.25518 1.16583 0.87196 0.84274 0.79349 0.79940 1.19903 1.21135 1.18913 1.21632 0.98428 0.98096 0.96301 1.20393 1.01163 0.90258 0.95737 0.92465 0.92519 0.92854 0.90508 0.90915 0.89218 0.90959 0.92118 0.91938 0.90087 0.89452 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.89 37.16 0.37 -1.36 16 2 C -0.03 -0.47 6.32 -27.88 -0.18 -0.65 16 3 C 0.02 0.38 6.36 -82.65 -0.53 -0.14 16 4 N -0.49 -9.12 11.24 -6.82 -0.08 -9.20 16 5 C 0.24 4.43 7.65 -155.14 -1.19 3.24 16 6 N -0.44 -8.73 3.14 -110.27 -0.35 -9.08 16 7 C 0.01 0.18 7.51 -16.72 -0.13 0.06 16 8 Cl -0.02 -0.34 28.78 -51.86 -1.49 -1.84 16 9 C 0.09 1.87 5.46 -3.92 -0.02 1.85 16 10 C 0.01 0.13 1.70 -91.56 -0.16 -0.03 16 11 H 0.04 0.91 7.17 -51.93 -0.37 0.53 16 12 C -0.52 -13.23 9.11 -34.44 -0.31 -13.54 16 13 H 0.09 2.33 7.99 -52.49 -0.42 1.91 16 14 C 0.08 2.09 5.45 -17.82 -0.10 2.00 16 15 N -0.89 -25.36 13.96 55.43 0.77 -24.59 16 16 Si 0.86 20.50 24.28 -169.99 -4.13 16.37 16 17 H -0.27 -6.32 6.96 56.52 0.39 -5.93 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.26 -6.17 6.51 56.52 0.37 -5.80 16 20 C -0.11 -1.89 5.20 -26.45 -0.14 -2.03 16 21 C -0.04 -0.58 6.33 -27.50 -0.17 -0.76 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.07 0.89 7.93 -51.93 -0.41 0.48 16 27 H 0.09 1.89 8.12 -51.93 -0.42 1.47 16 28 H 0.07 1.62 3.63 -51.93 -0.19 1.43 16 29 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 31 H 0.08 1.36 8.12 -51.93 -0.42 0.94 16 32 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 281.20 15.07 4.24 4.24 Total: -1.00 -28.37 281.20 -7.95 -36.32 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -4.37 Total: -0.86 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -2.55 Total: -11.37 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.35 Total: -42.87 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.13 Total: 16.37 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.49 Total: -1.84 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.37 -7.95 -36.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261070729.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.613 kcal (2) G-P(sol) polarization free energy of solvation -28.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds