Wall clock time and date at job start Mon Mar 30 2020 05:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46884 * 2 1 4 4 N 1.34333 * 125.96621 * 269.97404 * 3 2 1 5 5 C 1.29972 * 109.25350 * 180.02562 * 4 3 2 6 6 N 1.35629 * 108.63904 * 359.91601 * 5 4 3 7 7 C 1.34982 * 125.96825 * 90.00128 * 3 2 1 8 8 Cl 1.73599 * 126.66162 * 0.02562 * 7 3 2 9 9 C 1.46474 * 124.84289 * 180.13408 * 6 5 4 10 10 C 1.53265 * 108.78288 * 17.14641 * 9 6 5 11 11 H 1.08998 * 109.46175 * 69.60941 * 10 9 6 12 12 C 1.50701 * 109.46305 * 189.58965 * 10 9 6 13 13 H 1.08002 * 119.99881 * 120.03189 * 12 10 9 14 14 C 1.37872 * 120.00566 * 300.03642 * 12 10 9 15 15 N 1.31514 * 120.00342 * 180.02562 * 14 12 10 16 16 Si 1.86807 * 119.99780 * 359.97438 * 14 12 10 17 17 H 1.48502 * 109.47134 * 90.00241 * 16 14 12 18 18 H 1.48506 * 109.46978 * 210.00509 * 16 14 12 19 19 H 1.48503 * 109.47081 * 330.00078 * 16 14 12 20 20 C 1.53144 * 109.50484 * 309.60266 * 10 9 6 21 21 C 1.51051 * 127.46514 * 179.97438 * 5 4 3 22 22 H 1.09001 * 109.46780 * 60.00328 * 1 2 3 23 23 H 1.09002 * 109.47096 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47375 * 300.00248 * 1 2 3 25 25 H 1.08992 * 109.46956 * 239.99902 * 2 1 3 26 26 H 1.09001 * 109.46780 * 119.99672 * 2 1 3 27 27 H 1.08994 * 109.58558 * 257.36095 * 9 6 5 28 28 H 1.08995 * 109.58314 * 136.93342 * 9 6 5 29 29 H 0.96998 * 119.99861 * 179.97438 * 15 14 12 30 30 H 1.09000 * 109.50828 * 309.58760 * 20 10 9 31 31 H 1.09003 * 109.50668 * 189.45679 * 20 10 9 32 32 H 1.09002 * 109.71670 * 76.22936 * 21 5 4 33 33 H 1.09001 * 109.71531 * 315.62952 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2957 2.1645 -1.0872 5 6 2.7110 3.3380 -0.7135 6 7 2.7242 3.3817 0.6420 7 6 2.2966 2.1683 1.0925 8 17 2.1244 1.6794 2.7493 9 6 3.1310 4.5420 1.4380 10 6 3.1162 5.7851 0.5416 11 1 2.0866 6.0388 0.2894 12 6 3.7531 6.9389 1.2725 13 1 4.6291 7.4201 0.8631 14 6 3.2177 7.3802 2.4639 15 7 3.7732 8.3874 3.1015 16 14 1.7023 6.5483 3.1719 17 1 2.1189 5.4326 4.0588 18 1 0.9157 7.5355 3.9543 19 1 0.8675 6.0157 2.0652 20 6 3.9004 5.4990 -0.7424 21 6 3.1203 4.4924 -1.5975 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 4.1370 4.3839 1.8267 28 1 2.4348 4.6799 2.2652 29 1 3.3963 8.6981 3.9395 30 1 4.8752 5.0826 -0.4884 31 1 4.0339 6.4252 -1.3014 32 1 2.2328 4.9712 -2.0114 33 1 3.7534 4.1291 -2.4071 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261070729.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:20 Heat of formation + Delta-G solvation = 18.607465 kcal Electronic energy + Delta-G solvation = -17033.803423 eV Core-core repulsion = 14312.894402 eV Total energy + Delta-G solvation = -2720.909021 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.46866 -38.33446 -37.81159 -35.12322 -34.29553 -33.90182 -30.99954 -29.13139 -26.87199 -25.16137 -24.18374 -22.67400 -21.14423 -20.08776 -19.03684 -18.21654 -17.14614 -16.52810 -15.98235 -15.67979 -15.22631 -15.16606 -14.93490 -14.54791 -14.42946 -13.74135 -13.54416 -13.16411 -13.11192 -12.67705 -12.61574 -12.43210 -12.28184 -12.11610 -11.90529 -11.70897 -11.50219 -11.38564 -11.08441 -10.84617 -10.56431 -9.20192 -8.43219 -6.48403 0.58262 0.76171 1.14985 1.23715 1.27826 1.85683 1.87344 2.15279 2.89744 3.22442 3.63640 3.76159 3.88033 4.10534 4.16666 4.35055 4.36265 4.48819 4.52652 4.58332 4.73215 4.91364 4.92909 5.05308 5.11122 5.26180 5.31334 5.35901 5.41900 5.44922 5.53764 5.97047 6.19422 6.61663 6.88549 7.16896 8.72712 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.024998 B = 0.008432 C = 0.006854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.827364 B = 3319.829705 C = 4084.291159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.036 4.036 3 C 0.025 3.975 4 N -0.497 5.497 5 C 0.227 3.773 6 N -0.453 5.453 7 C -0.013 4.013 8 Cl -0.009 7.009 9 C 0.100 3.900 10 C 0.006 3.994 11 H 0.034 0.966 12 C -0.512 4.512 13 H 0.057 0.943 14 C 0.031 3.969 15 N -0.931 5.931 16 Si 0.915 3.085 17 H -0.265 1.265 18 H -0.286 1.286 19 H -0.258 1.258 20 C -0.100 4.100 21 C -0.030 4.030 22 H 0.046 0.954 23 H 0.085 0.915 24 H 0.043 0.957 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.270 0.730 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.673 -14.419 -5.324 16.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.074 4.074 3 C -0.107 4.107 4 N -0.217 5.217 5 C -0.036 4.036 6 N -0.137 5.137 7 C -0.153 4.153 8 Cl 0.019 6.981 9 C -0.022 4.022 10 C -0.014 4.014 11 H 0.053 0.947 12 C -0.551 4.551 13 H 0.075 0.925 14 C -0.169 4.169 15 N -0.570 5.570 16 Si 0.742 3.258 17 H -0.191 1.191 18 H -0.213 1.213 19 H -0.182 1.182 20 C -0.138 4.138 21 C -0.068 4.068 22 H 0.066 0.934 23 H 0.104 0.896 24 H 0.063 0.937 25 H 0.106 0.894 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.737 -14.469 -5.697 16.256 hybrid contribution -0.406 0.491 2.164 2.256 sum -5.144 -13.978 -3.533 15.307 Atomic orbital electron populations 1.21663 0.93776 1.02854 1.01252 1.19950 0.96565 0.87094 1.03813 1.21097 1.05133 0.98730 0.85734 1.70069 1.19732 1.02439 1.29477 1.23882 1.02135 0.96632 0.80914 1.45706 1.48370 1.11019 1.08570 1.21700 1.15785 0.89549 0.88297 1.98336 1.96596 1.89240 1.13903 1.22846 1.00180 0.84149 0.94978 1.19441 0.97792 0.90213 0.93905 0.94743 1.21105 1.13749 1.14070 1.06141 0.92457 1.25667 0.98857 0.95112 0.97276 1.69967 1.42126 1.27485 1.17424 0.86351 0.81358 0.78563 0.79497 1.19070 1.21262 1.18236 1.21543 0.98051 0.99294 0.94890 1.20477 1.01953 0.88870 0.95499 0.93440 0.89643 0.93738 0.89395 0.89606 0.89787 0.92186 0.92078 0.92038 0.89148 0.87990 0.86342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.89 71.98 0.71 -2.23 16 2 C -0.04 -0.87 6.32 29.85 0.19 -0.68 16 3 C 0.02 0.81 6.36 41.43 0.26 1.07 16 4 N -0.50 -17.46 11.24 -175.49 -1.97 -19.43 16 5 C 0.23 8.01 7.65 138.20 1.06 9.06 16 6 N -0.45 -17.30 3.14 -502.78 -1.58 -18.87 16 7 C -0.01 -0.45 7.51 83.25 0.63 0.17 16 8 Cl -0.01 -0.28 28.78 -2.72 -0.08 -0.35 16 9 C 0.10 4.12 5.46 86.47 0.47 4.59 16 10 C 0.01 0.25 1.70 -11.40 -0.02 0.23 16 11 H 0.03 1.51 7.17 -2.39 -0.02 1.50 16 12 C -0.51 -26.48 9.11 25.60 0.23 -26.25 16 13 H 0.06 3.22 7.99 -2.91 -0.02 3.20 16 14 C 0.03 1.67 5.45 84.65 0.46 2.13 16 15 N -0.93 -54.50 13.96 21.45 0.30 -54.20 16 16 Si 0.92 42.35 24.28 68.60 1.67 44.01 16 17 H -0.26 -11.81 6.96 99.48 0.69 -11.11 16 18 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 19 H -0.26 -11.53 6.51 99.48 0.65 -10.88 16 20 C -0.10 -3.38 5.20 30.78 0.16 -3.22 16 21 C -0.03 -0.86 6.33 30.09 0.19 -0.67 16 22 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.09 1.85 7.93 -2.39 -0.02 1.83 16 27 H 0.08 3.51 8.12 -2.39 -0.02 3.49 16 28 H 0.06 2.62 3.63 -2.39 -0.01 2.61 16 29 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 30 H 0.06 2.09 8.12 -2.39 -0.02 2.07 16 31 H 0.09 2.89 8.12 -2.39 -0.02 2.87 16 32 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -60.38 281.20 3.72 -56.67 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 1.03 Total: 7.98 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 4.35 Total: -15.80 kcal Atomic # 7 Polarization: -89.26 SS G_CDS: -3.25 Total: -92.51 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.67 Total: 44.01 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.35 kcal Total: -60.38 3.72 -56.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261070729.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.275 kcal (2) G-P(sol) polarization free energy of solvation -60.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds