Wall clock time and date at job start Mon Mar 30 2020 05:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.47293 * 2 1 4 4 N 1.34330 * 125.96424 * 90.02554 * 3 2 1 5 5 C 1.30062 * 109.22333 * 179.97438 * 4 3 2 6 6 N 1.35538 * 108.63912 * 0.04792 * 5 4 3 7 7 C 1.34975 * 125.96695 * 270.00414 * 3 2 1 8 8 Cl 1.73603 * 126.66470 * 0.02562 * 7 3 2 9 9 C 1.46475 * 124.81431 * 179.91722 * 6 5 4 10 10 C 1.53261 * 108.79206 * 342.90136 * 9 6 5 11 11 H 1.09002 * 109.46288 * 290.35706 * 10 9 6 12 12 C 1.50700 * 109.46572 * 170.37122 * 10 9 6 13 13 H 1.07998 * 120.00345 * 239.98332 * 12 10 9 14 14 C 1.37883 * 119.99920 * 59.98430 * 12 10 9 15 15 N 1.31516 * 119.99898 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00052 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.46931 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47020 * 120.00088 * 16 14 12 19 19 H 1.48499 * 109.47009 * 240.00051 * 16 14 12 20 20 C 1.53148 * 109.51045 * 50.36784 * 10 9 6 21 21 C 1.51047 * 127.39278 * 180.09816 * 5 4 3 22 22 H 1.09003 * 109.47319 * 179.97438 * 1 2 3 23 23 H 1.09010 * 109.46630 * 299.99414 * 1 2 3 24 24 H 1.09002 * 109.47640 * 59.99272 * 1 2 3 25 25 H 1.09010 * 109.46630 * 240.00586 * 2 1 3 26 26 H 1.08993 * 109.47784 * 120.00676 * 2 1 3 27 27 H 1.08998 * 109.58818 * 223.10207 * 9 6 5 28 28 H 1.09001 * 109.58010 * 102.69175 * 9 6 5 29 29 H 0.96994 * 120.00247 * 180.02562 * 15 14 12 30 30 H 1.09002 * 109.50555 * 50.41530 * 20 10 9 31 31 H 1.08999 * 109.51070 * 170.55398 * 20 10 9 32 32 H 1.09002 * 109.71405 * 283.64148 * 21 5 4 33 33 H 1.08997 * 109.71954 * 44.24836 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2958 2.1644 1.0872 5 6 2.7114 3.3386 0.7126 6 7 2.7251 3.3813 -0.6420 7 6 2.2966 2.1683 -1.0924 8 17 2.1231 1.6799 -2.7493 9 6 3.1333 4.5412 -1.4380 10 6 3.1203 5.7843 -0.5417 11 1 2.0909 6.0397 -0.2899 12 6 3.7593 6.9370 -1.2724 13 1 4.6360 7.4167 -0.8629 14 6 3.2248 7.3794 -2.4640 15 7 2.1569 6.7956 -2.9625 16 14 4.0165 8.8086 -3.3694 17 1 5.1960 9.2867 -2.6043 18 1 4.4496 8.3615 -4.7176 19 1 3.0336 9.9133 -3.5062 20 6 3.9036 5.4972 0.7426 21 6 3.1219 4.4917 1.5976 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8932 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8898 27 1 2.4374 4.6799 -2.2653 28 1 4.1390 4.3817 -1.8268 29 1 1.7810 7.1065 -3.8009 30 1 4.8779 5.0794 0.4889 31 1 4.0383 6.4232 1.3016 32 1 2.2350 4.9719 2.0110 33 1 3.7538 4.1270 2.4074 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261070730.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:25 Heat of formation + Delta-G solvation = 24.050719 kcal Electronic energy + Delta-G solvation = -16900.564345 eV Core-core repulsion = 14179.891361 eV Total energy + Delta-G solvation = -2720.672984 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.78269 -36.52015 -36.16651 -33.57362 -32.58900 -32.08886 -28.77519 -27.44894 -25.17006 -23.54812 -22.57530 -21.07965 -19.61581 -18.37857 -16.62884 -16.20151 -15.34833 -14.70342 -14.41904 -14.20027 -13.53604 -13.37066 -13.23872 -12.91174 -12.63294 -12.12416 -11.74210 -11.60746 -11.24965 -11.14359 -10.99976 -10.84598 -10.74384 -10.67523 -10.61946 -10.11832 -9.65195 -9.35617 -9.30662 -8.91609 -8.57238 -7.61254 -6.29631 -4.37268 2.19194 2.44380 3.15480 3.25009 3.28061 3.43116 3.71162 4.23113 4.71734 5.02644 5.27155 5.31608 5.57290 5.64612 5.68977 5.80097 5.93596 6.03604 6.09127 6.14404 6.29783 6.35791 6.46275 6.48851 6.53704 6.66566 6.96794 7.13935 7.25771 7.44096 7.63615 7.73914 8.07883 8.52059 8.68013 9.30745 10.77865 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.028377 B = 0.006898 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.467824 B = 4058.007418 C = 4788.862808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.033 4.033 3 C 0.013 3.987 4 N -0.492 5.492 5 C 0.227 3.773 6 N -0.431 5.431 7 C 0.016 3.984 8 Cl -0.022 7.022 9 C 0.099 3.901 10 C 0.040 3.960 11 H 0.039 0.961 12 C -0.518 4.518 13 H 0.066 0.934 14 C 0.063 3.937 15 N -0.890 5.890 16 Si 0.899 3.101 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.117 4.117 21 C -0.033 4.033 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.117 0.883 28 H 0.067 0.933 29 H 0.266 0.734 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.226 -8.376 3.292 9.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.072 4.072 3 C -0.119 4.119 4 N -0.212 5.212 5 C -0.036 4.036 6 N -0.113 5.113 7 C -0.127 4.127 8 Cl 0.006 6.994 9 C -0.020 4.020 10 C 0.021 3.979 11 H 0.057 0.943 12 C -0.556 4.556 13 H 0.085 0.915 14 C -0.140 4.140 15 N -0.527 5.527 16 Si 0.727 3.273 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.155 4.155 21 C -0.072 4.072 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.135 0.865 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.397 -8.500 3.661 9.264 hybrid contribution 0.409 1.031 -1.861 2.167 sum 0.013 -7.469 1.800 7.683 Atomic orbital electron populations 1.21698 0.95083 1.01011 1.02243 1.19730 0.95570 0.89543 1.02323 1.20383 1.07467 0.97459 0.86641 1.70007 1.19522 1.02417 1.29204 1.23166 1.03188 0.95739 0.81523 1.45906 1.45986 1.11327 1.08042 1.21344 1.14545 0.89796 0.87003 1.98329 1.96607 1.89412 1.15037 1.22889 1.00913 0.81494 0.96722 1.19002 0.97247 0.91415 0.90274 0.94281 1.21080 1.13463 1.14702 1.06360 0.91547 1.25073 0.94617 0.96948 0.97364 1.69831 1.21281 1.41252 1.20364 0.86401 0.79424 0.81942 0.79552 1.19516 1.20842 1.20763 1.21805 0.98572 0.97600 0.97554 1.20305 1.00857 0.90439 0.95582 0.92723 0.92543 0.92769 0.91091 0.90794 0.86508 0.91511 0.92405 0.92603 0.90937 0.89779 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.89 37.16 0.37 -1.51 16 2 C -0.03 -0.49 6.32 -27.88 -0.18 -0.66 16 3 C 0.01 0.24 6.36 -82.66 -0.53 -0.28 16 4 N -0.49 -9.89 11.24 -6.82 -0.08 -9.97 16 5 C 0.23 4.59 7.65 -155.16 -1.19 3.40 16 6 N -0.43 -9.16 3.14 -110.27 -0.35 -9.51 16 7 C 0.02 0.32 7.51 -16.72 -0.13 0.20 16 8 Cl -0.02 -0.38 28.78 -51.86 -1.49 -1.88 16 9 C 0.10 2.26 5.77 -3.92 -0.02 2.24 16 10 C 0.04 0.91 2.11 -91.56 -0.19 0.71 16 11 H 0.04 0.99 8.12 -51.93 -0.42 0.57 16 12 C -0.52 -12.93 8.53 -34.44 -0.29 -13.22 16 13 H 0.07 1.63 7.74 -52.49 -0.41 1.22 16 14 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 15 N -0.89 -23.70 11.45 55.43 0.63 -23.07 16 16 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 17 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 C -0.12 -2.21 5.20 -26.45 -0.14 -2.35 16 21 C -0.03 -0.57 6.33 -27.51 -0.17 -0.75 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.95 7.93 -51.92 -0.41 0.53 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.12 2.94 6.42 -51.93 -0.33 2.61 16 28 H 0.07 1.53 8.12 -51.93 -0.42 1.11 16 29 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 30 H 0.06 1.05 8.12 -51.93 -0.42 0.62 16 31 H 0.07 1.28 8.11 -51.93 -0.42 0.86 16 32 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 288.17 15.07 4.34 4.34 Total: -1.00 -26.90 288.17 -9.03 -35.93 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -4.51 Total: 0.00 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -2.56 Total: -10.72 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.21 Total: -42.55 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.49 Total: -1.88 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -26.90 -9.03 -35.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261070730.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.976 kcal (2) G-P(sol) polarization free energy of solvation -26.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds