Wall clock time and date at job start Mon Mar 30 2020 05:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.47293 * 2 1 4 4 N 1.34330 * 125.96424 * 90.02554 * 3 2 1 5 5 C 1.30062 * 109.22333 * 179.97438 * 4 3 2 6 6 N 1.35538 * 108.63912 * 0.04792 * 5 4 3 7 7 C 1.34975 * 125.96695 * 270.00414 * 3 2 1 8 8 Cl 1.73603 * 126.66470 * 0.02562 * 7 3 2 9 9 C 1.46475 * 124.81431 * 179.91722 * 6 5 4 10 10 C 1.53261 * 108.79206 * 342.90136 * 9 6 5 11 11 H 1.09002 * 109.46288 * 290.35706 * 10 9 6 12 12 C 1.50700 * 109.46572 * 170.37122 * 10 9 6 13 13 H 1.07998 * 120.00345 * 239.98332 * 12 10 9 14 14 C 1.37883 * 119.99920 * 59.98430 * 12 10 9 15 15 N 1.31516 * 119.99898 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00052 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.46931 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47020 * 120.00088 * 16 14 12 19 19 H 1.48499 * 109.47009 * 240.00051 * 16 14 12 20 20 C 1.53148 * 109.51045 * 50.36784 * 10 9 6 21 21 C 1.51047 * 127.39278 * 180.09816 * 5 4 3 22 22 H 1.09003 * 109.47319 * 179.97438 * 1 2 3 23 23 H 1.09010 * 109.46630 * 299.99414 * 1 2 3 24 24 H 1.09002 * 109.47640 * 59.99272 * 1 2 3 25 25 H 1.09010 * 109.46630 * 240.00586 * 2 1 3 26 26 H 1.08993 * 109.47784 * 120.00676 * 2 1 3 27 27 H 1.08998 * 109.58818 * 223.10207 * 9 6 5 28 28 H 1.09001 * 109.58010 * 102.69175 * 9 6 5 29 29 H 0.96994 * 120.00247 * 180.02562 * 15 14 12 30 30 H 1.09002 * 109.50555 * 50.41530 * 20 10 9 31 31 H 1.08999 * 109.51070 * 170.55398 * 20 10 9 32 32 H 1.09002 * 109.71405 * 283.64148 * 21 5 4 33 33 H 1.08997 * 109.71954 * 44.24836 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2958 2.1644 1.0872 5 6 2.7114 3.3386 0.7126 6 7 2.7251 3.3813 -0.6420 7 6 2.2966 2.1683 -1.0924 8 17 2.1231 1.6799 -2.7493 9 6 3.1333 4.5412 -1.4380 10 6 3.1203 5.7843 -0.5417 11 1 2.0909 6.0397 -0.2899 12 6 3.7593 6.9370 -1.2724 13 1 4.6360 7.4167 -0.8629 14 6 3.2248 7.3794 -2.4640 15 7 2.1569 6.7956 -2.9625 16 14 4.0165 8.8086 -3.3694 17 1 5.1960 9.2867 -2.6043 18 1 4.4496 8.3615 -4.7176 19 1 3.0336 9.9133 -3.5062 20 6 3.9036 5.4972 0.7426 21 6 3.1219 4.4917 1.5976 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8932 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8898 27 1 2.4374 4.6799 -2.2653 28 1 4.1390 4.3817 -1.8268 29 1 1.7810 7.1065 -3.8009 30 1 4.8779 5.0794 0.4889 31 1 4.0383 6.4232 1.3016 32 1 2.2350 4.9719 2.0110 33 1 3.7538 4.1270 2.4074 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261070730.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:23 Heat of formation + Delta-G solvation = 11.243799 kcal Electronic energy + Delta-G solvation = -16901.119695 eV Core-core repulsion = 14179.891361 eV Total energy + Delta-G solvation = -2721.228334 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.32312 -38.11461 -37.66659 -35.07303 -34.19845 -33.64931 -30.43011 -28.95439 -26.94635 -25.02737 -24.00513 -22.74423 -21.05432 -19.99117 -18.50058 -17.84527 -16.92642 -16.50922 -15.83886 -15.60138 -14.95454 -14.93671 -14.73992 -14.38339 -14.25396 -13.49910 -13.34521 -13.04090 -12.89894 -12.62468 -12.54585 -12.34939 -12.27278 -12.23686 -11.87014 -11.72113 -11.35444 -11.12816 -10.94127 -10.72948 -10.35543 -9.10219 -8.23589 -6.37551 0.71375 0.90536 1.40155 1.44311 1.54563 1.92993 2.09015 2.38911 3.08427 3.31103 3.88039 3.94153 4.15029 4.27383 4.33445 4.52171 4.52668 4.57431 4.65159 4.77406 4.90964 4.97082 5.06932 5.07622 5.21020 5.36726 5.44927 5.46048 5.60619 5.65501 5.77811 6.01042 6.25249 6.74076 6.98140 7.33786 8.83008 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.028377 B = 0.006898 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.467824 B = 4058.007418 C = 4788.862808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.034 4.034 3 C 0.016 3.984 4 N -0.502 5.502 5 C 0.215 3.785 6 N -0.446 5.446 7 C -0.009 4.009 8 Cl -0.009 7.009 9 C 0.118 3.882 10 C 0.037 3.963 11 H 0.008 0.992 12 C -0.529 4.529 13 H 0.070 0.930 14 C 0.017 3.983 15 N -0.919 5.919 16 Si 0.960 3.040 17 H -0.261 1.261 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.107 4.107 21 C -0.028 4.028 22 H 0.086 0.914 23 H 0.045 0.955 24 H 0.042 0.958 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.058 0.942 29 H 0.265 0.735 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.325 -8.966 4.095 9.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.072 4.072 3 C -0.116 4.116 4 N -0.222 5.222 5 C -0.047 4.047 6 N -0.129 5.129 7 C -0.150 4.150 8 Cl 0.019 6.981 9 C -0.003 4.003 10 C 0.018 3.982 11 H 0.026 0.974 12 C -0.567 4.567 13 H 0.089 0.911 14 C -0.183 4.183 15 N -0.557 5.557 16 Si 0.785 3.215 17 H -0.185 1.185 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.145 4.145 21 C -0.066 4.066 22 H 0.104 0.896 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.156 -9.108 4.478 10.151 hybrid contribution 0.203 1.154 -2.101 2.406 sum 0.359 -7.954 2.376 8.309 Atomic orbital electron populations 1.21658 0.93893 1.02775 1.01152 1.19917 0.96486 0.87177 1.03631 1.21080 1.05887 0.98822 0.85852 1.70060 1.19981 1.02559 1.29644 1.23807 1.02879 0.96595 0.81451 1.45881 1.47093 1.11422 1.08470 1.21717 1.15409 0.89679 0.88233 1.98323 1.96575 1.89187 1.13976 1.22396 0.99478 0.82350 0.96026 1.18945 0.95955 0.91081 0.92179 0.97394 1.21425 1.13469 1.15288 1.06551 0.91145 1.25812 0.95049 0.99193 0.98264 1.69964 1.22565 1.42555 1.20663 0.85464 0.78716 0.79035 0.78269 1.18537 1.20916 1.20847 1.21684 0.98082 0.98853 0.95913 1.20404 1.01535 0.89187 0.95501 0.89556 0.93594 0.93863 0.89702 0.89521 0.89345 0.92366 0.92607 0.92376 0.89451 0.88867 0.86794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.89 71.98 0.71 -2.62 16 2 C -0.03 -0.92 6.32 29.85 0.19 -0.73 16 3 C 0.02 0.57 6.36 41.43 0.26 0.83 16 4 N -0.50 -19.57 11.24 -175.50 -1.97 -21.55 16 5 C 0.22 8.51 7.65 138.21 1.06 9.57 16 6 N -0.45 -19.01 3.14 -502.79 -1.58 -20.59 16 7 C -0.01 -0.34 7.51 83.25 0.63 0.28 16 8 Cl -0.01 -0.30 28.78 -2.72 -0.08 -0.38 16 9 C 0.12 5.49 5.77 86.47 0.50 5.98 16 10 C 0.04 1.73 2.11 -11.40 -0.02 1.71 16 11 H 0.01 0.41 8.12 -2.39 -0.02 0.39 16 12 C -0.53 -26.45 8.53 25.60 0.22 -26.23 16 13 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 14 C 0.02 0.85 5.30 84.66 0.45 1.30 16 15 N -0.92 -49.99 11.45 21.45 0.25 -49.74 16 16 Si 0.96 40.76 29.54 68.60 2.03 42.79 16 17 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 18 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 20 C -0.11 -3.92 5.20 30.78 0.16 -3.77 16 21 C -0.03 -0.91 6.33 30.09 0.19 -0.72 16 22 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 24 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.08 2.07 7.93 -2.38 -0.02 2.05 16 26 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.09 4.61 6.42 -2.39 -0.02 4.60 16 28 H 0.06 2.73 8.12 -2.39 -0.02 2.71 16 29 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 30 H 0.06 2.09 8.12 -2.39 -0.02 2.07 16 31 H 0.09 2.92 8.11 -2.39 -0.02 2.90 16 32 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 33 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -57.33 288.17 4.08 -53.25 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 1.10 Total: 10.60 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: 4.34 Total: -14.39 kcal Atomic # 7 Polarization: -88.57 SS G_CDS: -3.31 Total: -91.87 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.08 Total: -0.38 kcal Total: -57.33 4.08 -53.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261070730.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.496 kcal (2) G-P(sol) polarization free energy of solvation -57.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds