Wall clock time and date at job start Mon Mar 30 2020 06:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47250 * 2 1 4 4 C 1.50694 * 109.47181 * 120.00423 * 2 1 3 5 5 H 1.08003 * 120.00257 * 119.99958 * 4 2 1 6 6 C 1.37879 * 119.99790 * 299.99637 * 4 2 1 7 7 N 1.31513 * 120.00069 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99973 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47105 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47254 * 120.00034 * 8 6 4 11 11 H 1.48499 * 109.47043 * 240.00163 * 8 6 4 12 12 C 1.50703 * 109.46967 * 240.00574 * 2 1 3 13 13 C 1.35123 * 126.67849 * 299.84028 * 12 2 1 14 14 Cl 1.73604 * 125.98806 * 0.12047 * 13 12 2 15 15 N 1.34325 * 108.04000 * 180.02562 * 13 12 2 16 16 C 1.30115 * 109.23041 * 0.06896 * 15 13 12 17 17 N 1.35468 * 108.69927 * 359.97438 * 16 15 13 18 18 C 1.46472 * 124.84991 * 179.88593 * 17 16 15 19 19 C 1.53260 * 108.80126 * 342.93045 * 18 17 16 20 20 C 1.53153 * 109.50646 * 50.34019 * 19 18 17 21 21 C 1.51051 * 127.37121 * 180.02562 * 16 15 13 22 22 H 1.09002 * 109.47419 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47363 * 299.99989 * 1 2 3 24 24 H 1.09005 * 109.47399 * 59.99799 * 1 2 3 25 25 H 0.97004 * 119.99891 * 180.02562 * 7 6 4 26 26 H 1.08996 * 109.58476 * 223.13505 * 18 17 16 27 27 H 1.09000 * 109.58199 * 102.71861 * 18 17 16 28 28 H 1.09003 * 109.46713 * 290.33373 * 19 18 17 29 29 H 1.09003 * 109.46528 * 170.35451 * 19 18 17 30 30 H 1.08995 * 109.51006 * 170.59711 * 20 19 18 31 31 H 1.09003 * 109.50686 * 50.45640 * 20 19 18 32 32 H 1.09002 * 109.71670 * 44.28952 * 21 16 15 33 33 H 1.09001 * 109.71531 * 283.68968 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 3.1484 -2.2858 3.6036 10 1 3.1473 -0.1859 4.8160 11 1 1.1678 -1.5867 4.8164 12 6 2.0323 -0.7103 -1.2306 13 6 1.7929 -1.9947 -1.5754 14 17 0.8406 -3.1324 -0.6739 15 7 2.4190 -2.2367 -2.7389 16 6 3.0353 -1.1582 -3.1262 17 7 2.8192 -0.1823 -2.2119 18 6 3.3537 1.1787 -2.2982 19 6 4.5034 1.1946 -3.3115 20 6 4.0467 0.5301 -4.6136 21 6 3.8635 -0.9742 -4.3761 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 0.7088 1.1612 3.4844 26 1 3.7237 1.4886 -1.3209 27 1 2.5682 1.8595 -2.6264 28 1 5.3542 0.6485 -2.9041 29 1 4.7960 2.2251 -3.5128 30 1 4.7992 0.6877 -5.3862 31 1 3.0999 0.9663 -4.9322 32 1 3.3492 -1.4209 -5.2270 33 1 4.8368 -1.4471 -4.2451 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261084202.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:12 Heat of formation + Delta-G solvation = 16.328980 kcal Electronic energy + Delta-G solvation = -17129.351549 eV Core-core repulsion = 14408.343725 eV Total energy + Delta-G solvation = -2721.007824 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.27544 -37.79855 -36.91611 -36.42663 -34.18123 -32.56884 -30.45901 -28.58234 -27.22399 -25.10382 -23.74950 -22.97147 -21.16282 -19.83922 -18.31374 -17.70978 -16.89072 -16.56002 -15.92887 -15.45612 -15.05732 -14.98697 -14.70297 -14.28806 -13.97219 -13.57223 -13.29122 -12.96825 -12.77547 -12.46496 -12.39825 -12.19185 -12.13763 -11.98724 -11.93290 -11.73564 -11.58435 -11.20289 -10.77710 -10.41449 -10.33339 -8.92583 -8.11284 -6.22159 1.08890 1.20611 1.38025 1.42191 1.53076 1.98188 2.05493 2.44491 3.17244 3.48156 3.71801 3.80097 3.85955 4.19797 4.34351 4.49232 4.50639 4.55132 4.84166 4.89031 4.94267 4.98843 5.04466 5.11442 5.14333 5.32840 5.37174 5.47569 5.59832 5.83381 5.97749 6.25817 6.35613 6.80933 7.00983 7.44239 8.93721 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.023610 B = 0.008062 C = 0.006897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.642011 B = 3472.048495 C = 4059.025341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.118 3.882 3 H 0.017 0.983 4 C -0.504 4.504 5 H 0.043 0.957 6 C 0.025 3.975 7 N -0.912 5.912 8 Si 0.945 3.055 9 H -0.275 1.275 10 H -0.276 1.276 11 H -0.279 1.279 12 C 0.039 3.961 13 C 0.011 3.989 14 Cl -0.025 7.025 15 N -0.518 5.518 16 C 0.202 3.798 17 N -0.455 5.455 18 C 0.094 3.906 19 C -0.125 4.125 20 C -0.115 4.115 21 C -0.027 4.027 22 H 0.039 0.961 23 H 0.069 0.931 24 H 0.018 0.982 25 H 0.263 0.737 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.749 2.750 -13.210 15.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.099 3.901 3 H 0.035 0.965 4 C -0.543 4.543 5 H 0.062 0.938 6 C -0.175 4.175 7 N -0.552 5.552 8 Si 0.771 3.229 9 H -0.200 1.200 10 H -0.202 1.202 11 H -0.204 1.204 12 C -0.079 4.079 13 C -0.141 4.141 14 Cl 0.003 6.997 15 N -0.240 5.240 16 C -0.061 4.061 17 N -0.139 5.139 18 C -0.027 4.027 19 C -0.162 4.162 20 C -0.153 4.153 21 C -0.066 4.066 22 H 0.058 0.942 23 H 0.088 0.912 24 H 0.037 0.963 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.091 0.909 29 H 0.139 0.861 30 H 0.136 0.864 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.632 2.169 -13.410 15.117 hybrid contribution -0.275 -0.051 1.907 1.928 sum 6.358 2.118 -11.503 13.312 Atomic orbital electron populations 1.21669 0.96688 1.00273 0.99662 1.17164 0.93117 0.93579 0.86285 0.96507 1.21090 1.30886 1.11834 0.90486 0.93830 1.25492 0.95252 0.95611 1.01099 1.69969 1.37405 1.23789 1.24040 0.85696 0.78341 0.78795 0.80066 1.20023 1.20157 1.20445 1.21622 0.98293 0.94078 0.93935 1.20430 1.07333 0.90254 0.96055 1.98268 1.69312 1.60206 1.71962 1.69534 1.14348 1.27814 1.12275 1.24013 1.02599 0.83022 0.96450 1.45440 1.38023 1.12981 1.17430 1.22293 0.98583 0.79184 1.02645 1.21942 0.95514 1.04668 0.94079 1.21691 1.03627 0.92155 0.97841 1.20447 0.97852 0.99226 0.89098 0.94168 0.91234 0.96310 0.92744 0.90149 0.89027 0.90948 0.86096 0.86414 0.91178 0.87818 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.21 8.83 71.98 0.64 -5.58 16 2 C 0.12 6.00 2.51 -12.29 -0.03 5.97 16 3 H 0.02 0.89 7.41 -2.39 -0.02 0.87 16 4 C -0.50 -27.83 7.81 25.60 0.20 -27.63 16 5 H 0.04 2.51 7.72 -2.91 -0.02 2.49 16 6 C 0.02 1.34 5.30 84.66 0.45 1.79 16 7 N -0.91 -51.06 11.32 21.45 0.24 -50.82 16 8 Si 0.94 44.05 29.54 68.60 2.03 46.07 16 9 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 C 0.04 1.79 5.65 41.13 0.23 2.03 16 13 C 0.01 0.53 7.45 83.59 0.62 1.15 16 14 Cl -0.03 -1.16 26.67 -2.72 -0.07 -1.23 16 15 N -0.52 -22.27 11.24 -178.36 -2.01 -24.28 16 16 C 0.20 7.08 7.65 138.21 1.06 8.13 16 17 N -0.46 -16.95 3.14 -498.99 -1.57 -18.52 16 18 C 0.09 2.56 6.47 86.47 0.56 3.12 16 19 C -0.12 -2.11 5.94 30.73 0.18 -1.93 16 20 C -0.12 -1.69 5.96 30.78 0.18 -1.51 16 21 C -0.03 -0.59 6.33 30.09 0.19 -0.40 16 22 H 0.04 1.98 6.22 -2.39 -0.01 1.97 16 23 H 0.07 3.73 6.07 -2.39 -0.01 3.71 16 24 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 25 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 26 H 0.08 2.42 7.89 -2.39 -0.02 2.41 16 27 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.07 1.31 8.12 -2.39 -0.02 1.29 16 29 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 1.07 8.12 -2.39 -0.02 1.05 16 32 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -67.53 281.84 4.01 -63.52 By element: Atomic # 1 Polarization: -1.00 SS G_CDS: 1.11 Total: 0.10 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 4.28 Total: -14.85 kcal Atomic # 7 Polarization: -90.28 SS G_CDS: -3.33 Total: -93.61 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.07 Total: -1.23 kcal Total: -67.53 4.01 -63.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261084202.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.850 kcal (2) G-P(sol) polarization free energy of solvation -67.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds