Wall clock time and date at job start Mon Mar 30 2020 06:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47600 * 179.97438 * 10 9 7 12 12 H 1.09008 * 110.43115 * 56.08696 * 11 10 9 13 13 C 1.54892 * 110.48724 * 293.54755 * 11 10 9 14 14 C 1.54884 * 102.74742 * 203.37664 * 13 11 10 15 15 C 1.54261 * 104.19813 * 37.93949 * 14 13 11 16 16 F 1.39901 * 110.03359 * 95.67445 * 15 14 13 17 17 C 1.53003 * 110.03646 * 217.05811 * 15 14 13 18 18 F 1.39900 * 109.47063 * 58.54138 * 17 15 14 19 19 F 1.39898 * 109.47268 * 178.54867 * 17 15 14 20 20 F 1.39902 * 109.47057 * 298.54610 * 17 15 14 21 21 C 1.53875 * 106.59985 * 336.38774 * 15 14 13 22 22 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 24 24 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 25 25 H 1.09003 * 109.46788 * 300.00488 * 10 9 7 26 26 H 1.08999 * 109.46950 * 59.99414 * 10 9 7 27 27 H 1.08996 * 110.75267 * 321.69000 * 13 11 10 28 28 H 1.08995 * 110.75682 * 85.05885 * 13 11 10 29 29 H 1.08994 * 110.48748 * 156.62066 * 14 13 11 30 30 H 1.09006 * 110.48962 * 279.26554 * 14 13 11 31 31 H 1.08998 * 110.03661 * 240.71540 * 21 15 14 32 32 H 1.09006 * 110.02847 * 119.28262 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4800 -4.9871 0.0001 12 1 0.7959 -5.0320 -0.8474 13 6 0.7074 -5.1664 1.3306 14 6 0.5312 -6.7026 1.4191 15 6 1.8578 -7.2679 0.8713 16 9 2.7299 -7.5526 1.9275 17 6 1.5910 -8.5350 0.0564 18 9 0.7172 -8.2379 -0.9950 19 9 2.7970 -9.0188 -0.4619 20 9 1.0146 -9.5071 0.8811 21 6 2.4611 -6.1772 -0.0310 22 1 -0.4850 0.8401 0.0004 23 1 0.6246 -2.5570 0.8898 24 1 0.6239 -2.5567 -0.8903 25 1 2.8717 -3.6044 -0.8905 26 1 2.8717 -3.6044 0.8894 27 1 1.2943 -4.7958 2.1709 28 1 -0.2611 -4.6684 1.2850 29 1 0.3837 -7.0107 2.4541 30 1 -0.3059 -7.0269 0.8007 31 1 2.5637 -6.5500 -1.0501 32 1 3.4334 -5.8696 0.3542 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261115353.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:58 Heat of formation + Delta-G solvation = -233.467895 kcal Electronic energy + Delta-G solvation = -19492.641829 eV Core-core repulsion = 15758.316133 eV Total energy + Delta-G solvation = -3734.325696 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.43319 -48.25819 -47.83002 -47.60595 -38.07210 -33.69617 -31.70802 -29.42848 -28.43295 -25.36348 -23.82609 -21.51644 -20.70845 -19.66226 -18.77506 -18.46658 -18.17933 -16.32989 -15.84507 -15.52723 -14.71549 -14.58163 -14.53481 -14.39775 -14.24946 -14.21963 -13.96705 -13.91473 -13.47668 -13.25337 -12.63998 -12.30546 -11.71009 -11.42797 -11.29839 -11.23848 -11.00237 -10.91665 -10.53874 -10.50468 -10.26475 -9.69080 -9.29067 -9.06033 -8.35190 -6.01191 -4.03364 2.29882 3.32520 3.34384 3.37145 3.39524 3.56278 3.70805 4.12057 4.33109 4.45150 4.51391 5.13917 5.20261 5.27519 5.34881 5.36555 5.56716 5.68255 5.84282 5.99789 6.23172 6.30211 6.40437 6.64927 6.83576 7.09109 7.66124 7.80794 7.98903 8.41743 9.03680 9.60835 11.10015 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.048390 B = 0.004437 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.496031 B = 6308.859639 C = 6371.403018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.022 3.978 10 C -0.103 4.103 11 C -0.087 4.087 12 H 0.081 0.919 13 C -0.111 4.111 14 C -0.144 4.144 15 C 0.079 3.921 16 F -0.176 7.176 17 C 0.437 3.563 18 F -0.168 7.168 19 F -0.176 7.176 20 F -0.177 7.177 21 C -0.140 4.140 22 H 0.261 0.739 23 H 0.019 0.981 24 H 0.015 0.985 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.659 -16.575 1.214 16.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.141 4.141 11 C -0.106 4.106 12 H 0.099 0.901 13 C -0.149 4.149 14 C -0.182 4.182 15 C 0.059 3.941 16 F -0.156 7.156 17 C 0.382 3.618 18 F -0.149 7.149 19 F -0.158 7.158 20 F -0.158 7.158 21 C -0.178 4.178 22 H 0.070 0.930 23 H 0.037 0.963 24 H 0.033 0.967 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.527 -16.501 1.220 16.616 hybrid contribution 0.516 0.536 -0.095 0.750 sum 2.044 -15.964 1.125 16.134 Atomic orbital electron populations 1.69949 1.06035 1.26688 1.50853 1.25009 0.94829 0.99196 0.95332 0.86679 0.79612 0.83228 0.78616 1.21301 1.20261 1.20273 1.21236 0.92998 0.91198 1.50623 0.92826 1.19103 0.93978 0.91133 0.97318 1.21693 0.98876 0.92954 1.00576 1.22116 0.96162 0.94342 0.97972 0.90103 1.22572 1.02174 0.91667 0.98449 1.23089 0.93211 0.98963 1.02904 1.22901 0.93461 0.91341 0.86370 1.92960 1.70737 1.94294 1.57637 1.21040 0.74712 0.86483 0.79550 1.93213 1.69774 1.93139 1.58791 1.93207 1.45304 1.89544 1.87700 1.93203 1.84876 1.65862 1.71908 1.22984 1.01729 0.94189 0.98893 0.92969 0.96276 0.96659 0.93080 0.93018 0.90339 0.89538 0.89012 0.89012 0.89833 0.88366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.02 0.53 4.82 -27.89 -0.13 0.40 16 10 C -0.10 -1.98 4.51 -26.73 -0.12 -2.10 16 11 C -0.09 -1.34 2.90 -88.96 -0.26 -1.59 16 12 H 0.08 1.24 8.14 -51.92 -0.42 0.81 16 13 C -0.11 -1.57 5.51 -24.74 -0.14 -1.71 16 14 C -0.14 -1.70 5.88 -25.08 -0.15 -1.85 16 15 C 0.08 1.00 1.10 -89.50 -0.10 0.90 16 16 F -0.18 -2.42 16.77 2.25 0.04 -2.38 16 17 C 0.44 5.41 2.26 37.16 0.08 5.49 16 18 F -0.17 -2.07 16.07 2.25 0.04 -2.03 16 19 F -0.18 -2.25 16.95 2.25 0.04 -2.22 16 20 F -0.18 -2.20 17.08 2.25 0.04 -2.16 16 21 C -0.14 -1.84 5.51 -25.61 -0.14 -1.98 16 22 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 23 H 0.02 0.49 7.39 -51.93 -0.38 0.10 16 24 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.05 0.98 8.10 -51.93 -0.42 0.56 16 27 H 0.08 1.15 8.02 -51.93 -0.42 0.73 16 28 H 0.09 1.26 8.01 -51.93 -0.42 0.85 16 29 H 0.09 0.98 8.11 -51.93 -0.42 0.56 16 30 H 0.09 0.99 7.30 -51.93 -0.38 0.61 16 31 H 0.08 1.01 7.32 -51.93 -0.38 0.63 16 32 H 0.10 1.28 7.71 -51.93 -0.40 0.88 16 LS Contribution 280.49 15.07 4.23 4.23 Total: -1.00 -28.78 280.49 -5.30 -34.08 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: -4.03 Total: -4.47 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -1.36 Total: -15.69 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.74 Total: -25.73 kcal Atomic # 9 Polarization: -8.94 SS G_CDS: 0.15 Total: -8.79 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.78 -5.30 -34.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115353.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.392 kcal (2) G-P(sol) polarization free energy of solvation -28.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds