Wall clock time and date at job start Mon Mar 30 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47600 * 179.97438 * 10 9 7 12 12 H 1.09008 * 110.43115 * 56.08696 * 11 10 9 13 13 C 1.54892 * 110.48724 * 293.54755 * 11 10 9 14 14 C 1.54884 * 102.74742 * 203.37664 * 13 11 10 15 15 C 1.54261 * 104.19813 * 37.93949 * 14 13 11 16 16 F 1.39901 * 110.03359 * 95.67445 * 15 14 13 17 17 C 1.53003 * 110.03646 * 217.05811 * 15 14 13 18 18 F 1.39900 * 109.47063 * 58.54138 * 17 15 14 19 19 F 1.39898 * 109.47268 * 178.54867 * 17 15 14 20 20 F 1.39902 * 109.47057 * 298.54610 * 17 15 14 21 21 C 1.53875 * 106.59985 * 336.38774 * 15 14 13 22 22 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 24 24 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 25 25 H 1.09003 * 109.46788 * 300.00488 * 10 9 7 26 26 H 1.08999 * 109.46950 * 59.99414 * 10 9 7 27 27 H 1.08996 * 110.75267 * 321.69000 * 13 11 10 28 28 H 1.08995 * 110.75682 * 85.05885 * 13 11 10 29 29 H 1.08994 * 110.48748 * 156.62066 * 14 13 11 30 30 H 1.09006 * 110.48962 * 279.26554 * 14 13 11 31 31 H 1.08998 * 110.03661 * 240.71540 * 21 15 14 32 32 H 1.09006 * 110.02847 * 119.28262 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4800 -4.9871 0.0001 12 1 0.7959 -5.0320 -0.8474 13 6 0.7074 -5.1664 1.3306 14 6 0.5312 -6.7026 1.4191 15 6 1.8578 -7.2679 0.8713 16 9 2.7299 -7.5526 1.9275 17 6 1.5910 -8.5350 0.0564 18 9 0.7172 -8.2379 -0.9950 19 9 2.7970 -9.0188 -0.4619 20 9 1.0146 -9.5071 0.8811 21 6 2.4611 -6.1772 -0.0310 22 1 -0.4850 0.8401 0.0004 23 1 0.6246 -2.5570 0.8898 24 1 0.6239 -2.5567 -0.8903 25 1 2.8717 -3.6044 -0.8905 26 1 2.8717 -3.6044 0.8894 27 1 1.2943 -4.7958 2.1709 28 1 -0.2611 -4.6684 1.2850 29 1 0.3837 -7.0107 2.4541 30 1 -0.3059 -7.0269 0.8007 31 1 2.5637 -6.5500 -1.0501 32 1 3.4334 -5.8696 0.3542 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261115353.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:57 Heat of formation + Delta-G solvation = -247.700909 kcal Electronic energy + Delta-G solvation = -19493.259018 eV Core-core repulsion = 15758.316133 eV Total energy + Delta-G solvation = -3734.942886 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.41272 -49.27488 -48.80867 -48.60076 -39.26903 -35.57196 -33.42908 -30.51746 -29.94999 -26.91150 -25.18942 -23.12244 -21.80842 -21.00848 -19.77624 -19.45867 -19.19112 -18.40267 -16.96400 -16.71141 -16.40249 -15.73917 -15.55520 -15.50628 -15.43450 -15.20982 -14.95941 -14.92871 -14.80383 -14.58003 -14.08196 -13.98680 -13.32868 -12.87191 -12.85066 -12.55919 -12.33360 -12.28430 -12.07002 -11.97264 -11.65330 -11.31770 -11.15761 -10.95428 -10.49628 -8.16758 -6.26662 1.30339 1.41855 1.43830 1.51724 2.35971 2.43042 2.55502 2.72277 3.09097 3.16792 3.31641 3.48417 4.01128 4.10077 4.15709 4.30201 4.45294 4.62956 4.65039 4.85325 4.94090 4.98361 5.05549 5.22567 5.35735 5.40846 5.57954 5.84510 5.92061 6.30757 6.91212 7.42269 8.94423 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.048390 B = 0.004437 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.496031 B = 6308.859639 C = 6371.403018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.959 3.041 4 H -0.284 1.284 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.545 4.545 8 H 0.057 0.943 9 C 0.025 3.975 10 C -0.092 4.092 11 C -0.085 4.085 12 H 0.080 0.920 13 C -0.113 4.113 14 C -0.136 4.136 15 C 0.080 3.920 16 F -0.181 7.181 17 C 0.442 3.558 18 F -0.166 7.166 19 F -0.178 7.178 20 F -0.176 7.176 21 C -0.135 4.135 22 H 0.262 0.738 23 H 0.001 0.999 24 H -0.010 1.010 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.462 -17.148 1.296 17.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.784 3.216 4 H -0.209 1.209 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.583 4.583 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.129 4.129 11 C -0.103 4.103 12 H 0.099 0.901 13 C -0.150 4.150 14 C -0.174 4.174 15 C 0.060 3.940 16 F -0.161 7.161 17 C 0.387 3.613 18 F -0.148 7.148 19 F -0.159 7.159 20 F -0.157 7.157 21 C -0.173 4.173 22 H 0.071 0.929 23 H 0.020 0.980 24 H 0.009 0.991 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.343 -17.088 1.303 17.297 hybrid contribution 0.251 0.711 -0.124 0.764 sum 2.594 -16.378 1.179 16.624 Atomic orbital electron populations 1.70077 1.07644 1.27665 1.51850 1.25905 0.95708 1.03071 0.94914 0.85596 0.78361 0.78592 0.79084 1.20948 1.19305 1.19363 1.21736 0.93504 0.92750 1.50280 0.92485 1.19006 0.94435 0.92563 0.95176 1.21490 0.97802 0.92989 1.00662 1.21985 0.96433 0.93234 0.98689 0.90143 1.22511 1.01364 0.93600 0.97521 1.23065 0.93285 0.96762 1.04241 1.22864 0.93557 0.91375 0.86172 1.92955 1.70978 1.94332 1.57866 1.20902 0.74664 0.86252 0.79456 1.93222 1.69709 1.93119 1.58722 1.93208 1.45451 1.89551 1.87716 1.93210 1.84838 1.65784 1.71888 1.22887 1.01073 0.93349 0.99954 0.92880 0.98031 0.99135 0.92944 0.92875 0.91028 0.90507 0.87480 0.87666 0.88520 0.88094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.54 -30.38 9.11 25.60 0.23 -30.15 16 8 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 9 C 0.03 1.27 4.82 29.85 0.14 1.41 16 10 C -0.09 -3.49 4.51 30.59 0.14 -3.35 16 11 C -0.08 -2.52 2.90 -9.72 -0.03 -2.55 16 12 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 13 C -0.11 -3.10 5.51 31.88 0.18 -2.93 16 14 C -0.14 -2.95 5.88 31.67 0.19 -2.76 16 15 C 0.08 1.86 1.10 -10.07 -0.01 1.84 16 16 F -0.18 -4.59 16.77 44.97 0.75 -3.83 16 17 C 0.44 9.93 2.26 71.98 0.16 10.09 16 18 F -0.17 -3.72 16.07 44.97 0.72 -3.00 16 19 F -0.18 -4.16 16.95 44.97 0.76 -3.40 16 20 F -0.18 -3.96 17.08 44.97 0.77 -3.19 16 21 C -0.14 -3.29 5.51 31.32 0.17 -3.12 16 22 H 0.26 14.86 8.31 -92.70 -0.77 14.08 16 23 H 0.00 0.07 7.39 -2.38 -0.02 0.05 16 24 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 25 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.05 1.98 8.10 -2.39 -0.02 1.96 16 27 H 0.07 2.06 8.02 -2.39 -0.02 2.04 16 28 H 0.08 2.25 8.01 -2.39 -0.02 2.23 16 29 H 0.11 2.03 8.11 -2.39 -0.02 2.01 16 30 H 0.10 2.02 7.30 -2.38 -0.02 2.01 16 31 H 0.10 2.12 7.32 -2.39 -0.02 2.10 16 32 H 0.10 2.44 7.71 -2.38 -0.02 2.42 16 Total: -1.00 -60.68 280.49 8.07 -52.61 By element: Atomic # 1 Polarization: 0.42 SS G_CDS: 1.12 Total: 1.55 kcal Atomic # 6 Polarization: -32.59 SS G_CDS: 1.63 Total: -30.95 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.28 Total: -55.56 kcal Atomic # 9 Polarization: -16.43 SS G_CDS: 3.01 Total: -13.42 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -60.68 8.07 -52.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115353.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.092 kcal (2) G-P(sol) polarization free energy of solvation -60.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds