Wall clock time and date at job start Mon Mar 30 2020 06:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.43063 * 305.69901 * 11 10 9 13 13 C 1.54263 * 110.48818 * 68.23704 * 11 10 9 14 14 C 1.54085 * 106.49209 * 142.19764 * 13 11 10 15 15 C 1.54269 * 106.62431 * 0.17706 * 14 13 11 16 16 F 1.39894 * 110.48668 * 94.95774 * 15 14 13 17 17 C 1.52997 * 110.59880 * 217.54978 * 15 14 13 18 18 F 1.39901 * 109.47283 * 174.83910 * 17 15 14 19 19 F 1.39901 * 109.46852 * 294.83562 * 17 15 14 20 20 F 1.39900 * 109.47627 * 54.83722 * 17 15 14 21 21 C 1.54888 * 110.48749 * 183.15906 * 11 10 9 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 24 24 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 25 25 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 26 26 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 27 27 H 1.08995 * 110.03385 * 261.57757 * 13 11 10 28 28 H 1.09002 * 110.02798 * 23.00960 * 13 11 10 29 29 H 1.09004 * 110.11709 * 240.83228 * 14 13 11 30 30 H 1.08994 * 109.97308 * 119.44277 * 14 13 11 31 31 H 1.09000 * 110.75576 * 321.69352 * 21 11 10 32 32 H 1.09007 * 110.75568 * 84.87716 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 1 0.7735 -5.0189 0.8281 13 6 0.7467 -5.1865 -1.3435 14 6 0.8515 -6.6863 -1.6808 15 6 1.6405 -7.3435 -0.5294 16 9 0.7647 -7.8743 0.4236 17 6 2.5696 -8.4336 -1.0671 18 9 3.3570 -8.9317 -0.0235 19 9 1.8051 -9.4715 -1.6107 20 9 3.3963 -7.8946 -2.0587 21 6 2.4638 -6.1810 0.0788 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6240 -2.5568 -0.8903 25 1 2.8719 -3.6044 -0.8906 26 1 2.8719 -3.6044 0.8894 27 1 -0.2991 -4.8959 -1.2443 28 1 1.2269 -4.5946 -2.1228 29 1 1.3828 -6.8225 -2.6228 30 1 -0.1447 -7.1233 -1.7478 31 1 3.3561 -5.9869 -0.5164 32 1 2.7305 -6.3931 1.1142 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261115355.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:03 Heat of formation + Delta-G solvation = -233.472808 kcal Electronic energy + Delta-G solvation = -19456.278754 eV Core-core repulsion = 15721.952845 eV Total energy + Delta-G solvation = -3734.325909 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.43050 -48.25523 -47.83015 -47.61805 -38.01497 -33.70333 -31.73769 -29.40337 -28.47631 -25.39760 -23.84961 -21.40449 -20.84128 -19.64952 -18.75455 -18.45072 -17.97461 -16.33242 -16.12817 -15.40960 -14.83418 -14.62790 -14.56760 -14.46030 -14.25387 -14.08465 -13.96900 -13.93356 -13.42491 -13.31702 -12.61265 -12.29577 -11.79528 -11.32215 -11.24852 -11.19345 -11.07265 -10.94123 -10.63085 -10.47393 -10.16281 -9.70942 -9.29003 -9.04823 -8.35738 -6.01363 -4.03631 2.28909 3.30899 3.33618 3.37432 3.40448 3.52230 3.70771 4.11346 4.31779 4.44884 4.53256 5.13186 5.21953 5.26583 5.34450 5.34933 5.57467 5.67694 5.87613 5.96619 6.22292 6.32427 6.42328 6.66201 6.83826 7.08762 7.66448 7.80627 7.98890 8.41396 9.03759 9.60660 11.09862 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.046978 B = 0.004447 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.885996 B = 6294.482762 C = 6450.085198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.274 1.274 6 H -0.287 1.287 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.103 4.103 11 C -0.086 4.086 12 H 0.080 0.920 13 C -0.113 4.113 14 C -0.142 4.142 15 C 0.074 3.926 16 F -0.172 7.172 17 C 0.440 3.560 18 F -0.175 7.175 19 F -0.177 7.177 20 F -0.169 7.169 21 C -0.137 4.137 22 H 0.260 0.740 23 H 0.015 0.985 24 H 0.019 0.981 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.402 -16.471 -2.842 17.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.199 1.199 6 H -0.212 1.212 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.140 4.140 11 C -0.105 4.105 12 H 0.098 0.902 13 C -0.151 4.151 14 C -0.180 4.180 15 C 0.054 3.946 16 F -0.152 7.152 17 C 0.385 3.615 18 F -0.157 7.157 19 F -0.159 7.159 20 F -0.150 7.150 21 C -0.175 4.175 22 H 0.070 0.930 23 H 0.033 0.967 24 H 0.037 0.963 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.245 -16.395 -2.840 16.953 hybrid contribution 0.512 0.565 0.017 0.763 sum 3.757 -15.830 -2.822 16.513 Atomic orbital electron populations 1.69961 1.06045 1.26577 1.50909 1.25017 0.94824 0.99218 0.95345 0.86621 0.79867 0.83571 0.78105 1.20687 1.19895 1.21244 1.21271 0.93028 0.91172 1.50522 0.92753 1.19110 0.93978 0.91160 0.97334 1.21689 0.98842 0.92906 1.00605 1.22101 0.96253 0.94486 0.97619 0.90180 1.22237 1.02301 0.92216 0.98303 1.22891 1.00993 0.98191 0.95881 1.23004 0.89805 0.90900 0.90874 1.92951 1.69758 1.87279 1.65249 1.20957 0.81015 0.83119 0.76437 1.93211 1.75996 1.88779 1.57684 1.93206 1.75231 1.60998 1.86437 1.93202 1.73539 1.85701 1.62593 1.23312 0.99088 0.92588 1.02515 0.93021 0.96686 0.96297 0.92977 0.93045 0.90442 0.90078 0.89233 0.89226 0.88523 0.89136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.52 4.83 -27.89 -0.13 0.39 16 10 C -0.10 -1.96 4.54 -26.73 -0.12 -2.08 16 11 C -0.09 -1.34 2.87 -88.96 -0.26 -1.59 16 12 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 13 C -0.11 -1.60 5.61 -25.50 -0.14 -1.75 16 14 C -0.14 -1.68 5.99 -25.50 -0.15 -1.83 16 15 C 0.07 0.93 0.97 -88.96 -0.09 0.85 16 16 F -0.17 -2.39 16.91 2.25 0.04 -2.35 16 17 C 0.44 5.35 2.49 37.16 0.09 5.44 16 18 F -0.18 -2.21 17.08 2.25 0.04 -2.17 16 19 F -0.18 -2.19 17.16 2.25 0.04 -2.15 16 20 F -0.17 -2.01 15.77 2.25 0.04 -1.98 16 21 C -0.14 -1.79 5.29 -24.74 -0.13 -1.92 16 22 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 23 H 0.01 0.39 8.14 -51.92 -0.42 -0.03 16 24 H 0.02 0.48 7.55 -51.93 -0.39 0.09 16 25 H 0.05 0.97 8.01 -51.93 -0.42 0.55 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.08 1.18 7.74 -51.93 -0.40 0.78 16 29 H 0.09 0.94 7.17 -51.93 -0.37 0.57 16 30 H 0.09 0.97 8.12 -51.93 -0.42 0.55 16 31 H 0.10 1.18 7.46 -51.93 -0.39 0.79 16 32 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 LS Contribution 281.05 15.07 4.24 4.24 Total: -1.00 -28.88 281.05 -5.29 -34.17 By element: Atomic # 1 Polarization: -0.55 SS G_CDS: -4.05 Total: -4.59 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -1.34 Total: -15.72 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.74 Total: -25.80 kcal Atomic # 9 Polarization: -8.80 SS G_CDS: 0.15 Total: -8.65 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.88 -5.29 -34.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115355.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.304 kcal (2) G-P(sol) polarization free energy of solvation -28.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds