Wall clock time and date at job start Mon Mar 30 2020 06:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.43063 * 305.69901 * 11 10 9 13 13 C 1.54263 * 110.48818 * 68.23704 * 11 10 9 14 14 C 1.54085 * 106.49209 * 142.19764 * 13 11 10 15 15 C 1.54269 * 106.62431 * 0.17706 * 14 13 11 16 16 F 1.39894 * 110.48668 * 94.95774 * 15 14 13 17 17 C 1.52997 * 110.59880 * 217.54978 * 15 14 13 18 18 F 1.39901 * 109.47283 * 174.83910 * 17 15 14 19 19 F 1.39901 * 109.46852 * 294.83562 * 17 15 14 20 20 F 1.39900 * 109.47627 * 54.83722 * 17 15 14 21 21 C 1.54888 * 110.48749 * 183.15906 * 11 10 9 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 24 24 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 25 25 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 26 26 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 27 27 H 1.08995 * 110.03385 * 261.57757 * 13 11 10 28 28 H 1.09002 * 110.02798 * 23.00960 * 13 11 10 29 29 H 1.09004 * 110.11709 * 240.83228 * 14 13 11 30 30 H 1.08994 * 109.97308 * 119.44277 * 14 13 11 31 31 H 1.09000 * 110.75576 * 321.69352 * 21 11 10 32 32 H 1.09007 * 110.75568 * 84.87716 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 1 0.7735 -5.0189 0.8281 13 6 0.7467 -5.1865 -1.3435 14 6 0.8515 -6.6863 -1.6808 15 6 1.6405 -7.3435 -0.5294 16 9 0.7647 -7.8743 0.4236 17 6 2.5696 -8.4336 -1.0671 18 9 3.3570 -8.9317 -0.0235 19 9 1.8051 -9.4715 -1.6107 20 9 3.3963 -7.8946 -2.0587 21 6 2.4638 -6.1810 0.0788 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6240 -2.5568 -0.8903 25 1 2.8719 -3.6044 -0.8906 26 1 2.8719 -3.6044 0.8894 27 1 -0.2991 -4.8959 -1.2443 28 1 1.2269 -4.5946 -2.1228 29 1 1.3828 -6.8225 -2.6228 30 1 -0.1447 -7.1233 -1.7478 31 1 3.3561 -5.9869 -0.5164 32 1 2.7305 -6.3931 1.1142 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261115355.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:03 Heat of formation + Delta-G solvation = -247.853812 kcal Electronic energy + Delta-G solvation = -19456.902361 eV Core-core repulsion = 15721.952845 eV Total energy + Delta-G solvation = -3734.949516 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -51.39230 -49.26408 -48.79518 -48.60070 -39.21673 -35.57485 -33.45376 -30.51468 -29.97183 -26.94110 -25.21590 -23.06476 -21.89797 -20.95325 -19.72982 -19.42627 -19.05317 -18.36622 -17.28320 -16.60590 -16.37068 -15.89809 -15.59497 -15.53960 -15.21703 -15.19755 -14.93363 -14.92265 -14.83152 -14.64854 -14.11139 -13.92924 -13.37566 -12.89177 -12.77437 -12.48961 -12.31021 -12.23379 -12.18285 -12.06528 -11.53285 -11.33689 -11.15988 -10.93468 -10.50971 -8.17149 -6.27336 1.30368 1.41966 1.42382 1.53453 2.36502 2.42802 2.52430 2.73940 3.08502 3.16501 3.32271 3.52115 3.97508 4.12075 4.19187 4.24761 4.44326 4.64369 4.68843 4.83402 4.88579 5.00827 5.07588 5.26006 5.35784 5.40470 5.57700 5.83446 5.91576 6.29816 6.91024 7.41889 8.94367 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.046978 B = 0.004447 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.885996 B = 6294.482762 C = 6450.085198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.960 3.040 4 H -0.274 1.274 5 H -0.263 1.263 6 H -0.283 1.283 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.024 3.976 10 C -0.090 4.090 11 C -0.085 4.085 12 H 0.068 0.932 13 C -0.114 4.114 14 C -0.135 4.135 15 C 0.074 3.926 16 F -0.180 7.180 17 C 0.446 3.554 18 F -0.177 7.177 19 F -0.177 7.177 20 F -0.165 7.165 21 C -0.131 4.131 22 H 0.262 0.738 23 H -0.014 1.014 24 H 0.001 0.999 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.667 -16.989 -3.319 17.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.785 3.215 4 H -0.200 1.200 5 H -0.187 1.187 6 H -0.209 1.209 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.128 4.128 11 C -0.104 4.104 12 H 0.087 0.913 13 C -0.151 4.151 14 C -0.172 4.172 15 C 0.054 3.946 16 F -0.160 7.160 17 C 0.392 3.608 18 F -0.159 7.159 19 F -0.158 7.158 20 F -0.146 7.146 21 C -0.169 4.169 22 H 0.071 0.929 23 H 0.004 0.996 24 H 0.019 0.981 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.128 0.872 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.523 -16.928 -3.316 17.833 hybrid contribution 0.092 0.724 0.177 0.751 sum 4.615 -16.204 -3.139 17.138 Atomic orbital electron populations 1.70093 1.07735 1.27609 1.51960 1.25934 0.95697 1.03183 0.94921 0.85520 0.78778 0.78811 0.78380 1.20004 1.18701 1.20902 1.21763 0.93569 0.92616 1.50107 0.92259 1.19016 0.94465 0.92793 0.94992 1.21480 0.97716 0.92614 1.00977 1.21952 0.96523 0.93790 0.98100 0.91322 1.22183 1.01406 0.94146 0.97376 1.22859 1.01998 0.96049 0.96302 1.22995 0.89784 0.90959 0.90857 1.92941 1.70052 1.87398 1.65637 1.20759 0.80817 0.82865 0.76401 1.93212 1.76018 1.88790 1.57834 1.93212 1.75253 1.60945 1.86402 1.93215 1.73398 1.85633 1.62402 1.23243 0.98755 0.91357 1.03534 0.92902 0.99567 0.98109 0.92205 0.92922 0.91483 0.90542 0.87436 0.88036 0.87235 0.88301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 2 C 0.00 0.01 5.46 84.66 0.46 0.48 16 3 Si 0.96 43.73 29.54 68.60 2.03 45.75 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.54 -30.22 9.11 25.60 0.23 -29.99 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.02 1.23 4.83 29.85 0.14 1.38 16 10 C -0.09 -3.41 4.54 30.59 0.14 -3.28 16 11 C -0.09 -2.59 2.87 -9.72 -0.03 -2.62 16 12 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 13 C -0.11 -3.14 5.61 31.39 0.18 -2.96 16 14 C -0.13 -2.90 5.99 31.39 0.19 -2.71 16 15 C 0.07 1.70 0.97 -9.72 -0.01 1.69 16 16 F -0.18 -4.69 16.91 44.97 0.76 -3.93 16 17 C 0.45 9.77 2.49 71.98 0.18 9.95 16 18 F -0.18 -4.07 17.08 44.97 0.77 -3.30 16 19 F -0.18 -3.94 17.16 44.97 0.77 -3.17 16 20 F -0.17 -3.48 15.77 44.97 0.71 -2.77 16 21 C -0.13 -3.16 5.29 31.89 0.17 -2.99 16 22 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 23 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 24 H 0.00 0.03 7.55 -2.39 -0.02 0.01 16 25 H 0.06 2.16 8.01 -2.39 -0.02 2.14 16 26 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.08 2.18 7.74 -2.39 -0.02 2.16 16 29 H 0.11 1.96 7.17 -2.39 -0.02 1.95 16 30 H 0.10 1.98 8.12 -2.39 -0.02 1.96 16 31 H 0.11 2.38 7.46 -2.39 -0.02 2.36 16 32 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -61.25 281.05 8.09 -53.16 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: 1.12 Total: 1.25 kcal Atomic # 6 Polarization: -32.70 SS G_CDS: 1.65 Total: -31.05 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: 0.28 Total: -55.95 kcal Atomic # 9 Polarization: -16.18 SS G_CDS: 3.01 Total: -13.17 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -61.25 8.09 -53.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115355.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.695 kcal (2) G-P(sol) polarization free energy of solvation -61.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds