Wall clock time and date at job start Mon Mar 30 2020 06:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.43909 * 56.08656 * 11 10 9 13 13 C 1.54266 * 110.48454 * 293.54147 * 11 10 9 14 14 C 1.53870 * 106.59995 * 217.71281 * 13 11 10 15 15 C 1.54267 * 106.59832 * 0.02562 * 14 13 11 16 16 F 1.39904 * 110.48450 * 264.79347 * 15 14 13 17 17 C 1.53004 * 110.48476 * 142.28928 * 15 14 13 18 18 F 1.39895 * 109.47461 * 61.45176 * 17 15 14 19 19 F 1.39908 * 109.46771 * 181.45287 * 17 15 14 20 20 F 1.39902 * 109.46933 * 301.45019 * 17 15 14 21 21 C 1.54881 * 104.19534 * 23.60738 * 15 14 13 22 22 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 24 24 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 25 25 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 26 26 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 27 27 H 1.08996 * 110.03361 * 337.00404 * 13 11 10 28 28 H 1.09006 * 110.03040 * 98.43307 * 13 11 10 29 29 H 1.09008 * 110.03284 * 119.28691 * 14 13 11 30 30 H 1.09005 * 110.03334 * 240.71695 * 14 13 11 31 31 H 1.09002 * 110.75677 * 203.74035 * 21 15 14 32 32 H 1.09006 * 110.75763 * 80.37501 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5517 -2.6364 0.0035 12 1 5.9316 -2.0661 0.8511 13 6 6.0926 -2.0598 -1.3212 14 6 7.3395 -2.8855 -1.6833 15 6 7.5125 -3.9354 -0.5663 16 9 8.4112 -3.4760 0.4025 17 6 7.9915 -5.2655 -1.1513 18 9 9.2361 -5.0844 -1.7638 19 9 8.1093 -6.2103 -0.1261 20 9 7.0669 -5.7182 -2.0987 21 6 6.0933 -4.0873 0.0352 22 1 -0.4849 0.8400 -0.0004 23 1 3.8746 -0.6799 0.8911 24 1 3.8752 -0.6803 -0.8888 25 1 3.6587 -3.1509 -0.8875 26 1 3.6580 -3.1497 0.8925 27 1 5.3408 -2.1556 -2.1046 28 1 6.3637 -1.0123 -1.1893 29 1 7.1929 -3.3820 -2.6426 30 1 8.2158 -2.2386 -1.7272 31 1 6.1454 -4.4578 1.0590 32 1 5.4798 -4.7427 -0.5831 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261115356.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:06 Heat of formation + Delta-G solvation = -229.804002 kcal Electronic energy + Delta-G solvation = -19525.003137 eV Core-core repulsion = 15790.836319 eV Total energy + Delta-G solvation = -3734.166817 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.47626 -48.31607 -47.87661 -47.67142 -38.15070 -33.76687 -31.86762 -29.52186 -28.87609 -25.57225 -23.88262 -21.26125 -20.83367 -19.70950 -18.80958 -18.50196 -18.06721 -16.69496 -16.29551 -15.47832 -14.90849 -14.67813 -14.61789 -14.32429 -14.29491 -14.16936 -14.01053 -13.99377 -13.48121 -13.38536 -12.82885 -12.61714 -11.89779 -11.49921 -11.41818 -11.32585 -11.19582 -11.09942 -10.72683 -10.37236 -9.89235 -9.75889 -9.52471 -9.18516 -8.55207 -6.05838 -4.03893 2.23304 3.28493 3.28705 3.36769 3.39761 3.45254 3.65309 4.02387 4.25088 4.43457 4.45536 5.01595 5.12208 5.16134 5.23396 5.28752 5.47296 5.58649 5.77520 5.87034 6.07050 6.15025 6.27964 6.49667 6.65122 6.86764 7.27428 7.40806 7.78232 8.52329 8.99444 9.56868 11.07762 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.043713 B = 0.004854 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.389440 B = 5766.792917 C = 5964.516851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.095 4.095 11 C -0.089 4.089 12 H 0.080 0.920 13 C -0.117 4.117 14 C -0.141 4.141 15 C 0.074 3.926 16 F -0.172 7.172 17 C 0.440 3.560 18 F -0.177 7.177 19 F -0.175 7.175 20 F -0.168 7.168 21 C -0.137 4.137 22 H 0.263 0.737 23 H 0.015 0.985 24 H 0.013 0.987 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.382 -8.630 -2.896 19.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.132 4.132 11 C -0.108 4.108 12 H 0.099 0.901 13 C -0.154 4.154 14 C -0.179 4.179 15 C 0.054 3.946 16 F -0.152 7.152 17 C 0.385 3.615 18 F -0.159 7.159 19 F -0.156 7.156 20 F -0.150 7.150 21 C -0.175 4.175 22 H 0.072 0.928 23 H 0.033 0.967 24 H 0.031 0.969 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 17.264 -8.528 -2.886 19.471 hybrid contribution 0.616 0.648 -0.028 0.895 sum 17.880 -7.880 -2.914 19.756 Atomic orbital electron populations 1.69916 1.06331 1.26873 1.51232 1.25039 0.94706 0.99167 0.94598 0.86789 0.80402 0.83689 0.78478 1.20318 1.21432 1.18981 1.21166 0.89624 0.94422 1.50714 0.91081 1.19585 0.97021 0.92215 0.96303 1.21510 0.90020 1.00213 1.01484 1.22140 0.98470 0.92425 0.97727 0.90149 1.22237 0.95243 0.99426 0.98501 1.22843 1.01799 0.96792 0.96457 1.23003 0.90993 0.90427 0.90205 1.92954 1.68931 1.89202 1.64149 1.20936 0.75718 0.87974 0.76885 1.93206 1.43478 1.95381 1.83791 1.93216 1.95821 1.67639 1.58952 1.93209 1.65871 1.90274 1.65608 1.23311 0.90286 1.01122 1.02762 0.92754 0.96701 0.96864 0.92353 0.92386 0.89869 0.90672 0.89164 0.89170 0.89015 0.88227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.39 27.47 -169.99 -4.67 16.73 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 7 C -0.52 -14.54 9.66 -34.44 -0.33 -14.87 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.32 3.88 -27.89 -0.11 -0.42 16 10 C -0.09 -1.71 4.53 -26.73 -0.12 -1.83 16 11 C -0.09 -1.28 2.90 -88.95 -0.26 -1.54 16 12 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 13 C -0.12 -1.52 5.51 -25.62 -0.14 -1.66 16 14 C -0.14 -1.55 5.92 -25.61 -0.15 -1.70 16 15 C 0.07 0.88 0.97 -88.96 -0.09 0.79 16 16 F -0.17 -2.26 16.93 2.25 0.04 -2.22 16 17 C 0.44 5.14 2.46 37.16 0.09 5.23 16 18 F -0.18 -2.10 17.11 2.25 0.04 -2.06 16 19 F -0.17 -2.14 17.15 2.25 0.04 -2.10 16 20 F -0.17 -1.94 15.78 2.25 0.04 -1.90 16 21 C -0.14 -1.68 5.37 -24.73 -0.13 -1.81 16 22 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 23 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 24 H 0.01 0.29 6.91 -51.93 -0.36 -0.07 16 25 H 0.06 1.04 8.05 -51.93 -0.42 0.63 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.08 1.11 7.77 -51.93 -0.40 0.71 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.09 0.88 7.30 -51.92 -0.38 0.51 16 30 H 0.09 0.90 8.12 -51.93 -0.42 0.48 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.10 1.16 7.32 -51.93 -0.38 0.78 16 LS Contribution 277.35 15.07 4.18 4.18 Total: -1.00 -29.56 277.35 -4.92 -34.47 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: -4.01 Total: -4.13 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -1.34 Total: -16.03 kcal Atomic # 7 Polarization: -27.71 SS G_CDS: 0.77 Total: -26.94 kcal Atomic # 9 Polarization: -8.44 SS G_CDS: 0.15 Total: -8.29 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.56 -4.92 -34.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115356.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.331 kcal (2) G-P(sol) polarization free energy of solvation -29.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds