Wall clock time and date at job start Mon Mar 30 2020 06:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.43909 * 56.08656 * 11 10 9 13 13 C 1.54266 * 110.48454 * 293.54147 * 11 10 9 14 14 C 1.53870 * 106.59995 * 217.71281 * 13 11 10 15 15 C 1.54267 * 106.59832 * 0.02562 * 14 13 11 16 16 F 1.39904 * 110.48450 * 264.79347 * 15 14 13 17 17 C 1.53004 * 110.48476 * 142.28928 * 15 14 13 18 18 F 1.39895 * 109.47461 * 61.45176 * 17 15 14 19 19 F 1.39908 * 109.46771 * 181.45287 * 17 15 14 20 20 F 1.39902 * 109.46933 * 301.45019 * 17 15 14 21 21 C 1.54881 * 104.19534 * 23.60738 * 15 14 13 22 22 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 24 24 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 25 25 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 26 26 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 27 27 H 1.08996 * 110.03361 * 337.00404 * 13 11 10 28 28 H 1.09006 * 110.03040 * 98.43307 * 13 11 10 29 29 H 1.09008 * 110.03284 * 119.28691 * 14 13 11 30 30 H 1.09005 * 110.03334 * 240.71695 * 14 13 11 31 31 H 1.09002 * 110.75677 * 203.74035 * 21 15 14 32 32 H 1.09006 * 110.75763 * 80.37501 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5517 -2.6364 0.0035 12 1 5.9316 -2.0661 0.8511 13 6 6.0926 -2.0598 -1.3212 14 6 7.3395 -2.8855 -1.6833 15 6 7.5125 -3.9354 -0.5663 16 9 8.4112 -3.4760 0.4025 17 6 7.9915 -5.2655 -1.1513 18 9 9.2361 -5.0844 -1.7638 19 9 8.1093 -6.2103 -0.1261 20 9 7.0669 -5.7182 -2.0987 21 6 6.0933 -4.0873 0.0352 22 1 -0.4849 0.8400 -0.0004 23 1 3.8746 -0.6799 0.8911 24 1 3.8752 -0.6803 -0.8888 25 1 3.6587 -3.1509 -0.8875 26 1 3.6580 -3.1497 0.8925 27 1 5.3408 -2.1556 -2.1046 28 1 6.3637 -1.0123 -1.1893 29 1 7.1929 -3.3820 -2.6426 30 1 8.2158 -2.2386 -1.7272 31 1 6.1454 -4.4578 1.0590 32 1 5.4798 -4.7427 -0.5831 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261115356.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:06 Heat of formation + Delta-G solvation = -245.597078 kcal Electronic energy + Delta-G solvation = -19525.687976 eV Core-core repulsion = 15790.836319 eV Total energy + Delta-G solvation = -3734.851657 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -51.39426 -49.26227 -48.79937 -48.60260 -39.24871 -35.55030 -33.64976 -30.60871 -30.22144 -27.00826 -25.13027 -22.79952 -21.88349 -20.95537 -19.74319 -19.42895 -19.15193 -18.70424 -17.29266 -16.51502 -16.28001 -15.93402 -15.60173 -15.54379 -15.24487 -15.21034 -14.93646 -14.92831 -14.85118 -14.64682 -14.50515 -13.99421 -13.45939 -12.94476 -12.79884 -12.50407 -12.30350 -12.25459 -12.10335 -11.74944 -11.52217 -11.29588 -11.23705 -11.10369 -10.72507 -8.26706 -6.30318 1.30818 1.37660 1.40079 1.51668 2.36967 2.38587 2.52069 2.73679 3.07945 3.09437 3.31871 3.52223 3.94647 4.11409 4.18417 4.25915 4.45257 4.61414 4.66800 4.78344 4.85865 4.97285 5.02782 5.15524 5.28435 5.36792 5.58419 5.69070 5.71493 6.32507 6.78996 7.34572 8.90378 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.043713 B = 0.004854 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.389440 B = 5766.792917 C = 5964.516851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.001 3.999 3 Si 0.950 3.050 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.244 1.244 7 C -0.532 4.532 8 H 0.030 0.970 9 C -0.012 4.012 10 C -0.088 4.088 11 C -0.085 4.085 12 H 0.080 0.920 13 C -0.118 4.118 14 C -0.135 4.135 15 C 0.075 3.925 16 F -0.179 7.179 17 C 0.444 3.556 18 F -0.177 7.177 19 F -0.179 7.179 20 F -0.167 7.167 21 C -0.135 4.135 22 H 0.265 0.735 23 H 0.016 0.984 24 H 0.025 0.975 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.703 -8.064 -3.335 21.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.195 4.195 3 Si 0.773 3.227 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.167 1.167 7 C -0.570 4.570 8 H 0.048 0.952 9 C -0.049 4.049 10 C -0.125 4.125 11 C -0.104 4.104 12 H 0.098 0.902 13 C -0.156 4.156 14 C -0.173 4.173 15 C 0.055 3.945 16 F -0.159 7.159 17 C 0.389 3.611 18 F -0.158 7.158 19 F -0.160 7.160 20 F -0.148 7.148 21 C -0.172 4.172 22 H 0.074 0.926 23 H 0.035 0.965 24 H 0.044 0.956 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 19.606 -7.983 -3.327 21.429 hybrid contribution -0.182 0.379 0.118 0.437 sum 19.424 -7.604 -3.209 21.105 Atomic orbital electron populations 1.70082 1.08433 1.28066 1.53061 1.26049 0.95563 1.03621 0.94260 0.85660 0.79575 0.78167 0.79278 1.18967 1.21420 1.16728 1.21589 0.92576 0.92932 1.49900 0.95158 1.19546 0.93351 0.95336 0.96657 1.21358 0.92938 0.97182 1.01045 1.21994 0.95419 0.94204 0.98771 0.90179 1.22230 0.96017 0.99973 0.97371 1.22834 1.01322 0.96518 0.96594 1.22995 0.90401 0.90819 0.90297 1.92946 1.69138 1.89293 1.64515 1.20846 0.75724 0.87726 0.76798 1.93210 1.43461 1.95363 1.83756 1.93213 1.95842 1.67798 1.59164 1.93218 1.65808 1.90251 1.65521 1.23263 0.90681 0.99748 1.03545 0.92639 0.96549 0.95648 0.92576 0.93227 0.90339 0.90309 0.87767 0.87731 0.88376 0.87574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.96 13.96 21.45 0.30 -59.66 16 2 C 0.00 0.07 5.47 84.65 0.46 0.54 16 3 Si 0.95 43.51 27.47 68.60 1.88 45.40 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.24 -10.25 6.54 99.48 0.65 -9.60 16 7 C -0.53 -30.17 9.66 25.60 0.25 -29.93 16 8 H 0.03 1.90 7.99 -2.91 -0.02 1.87 16 9 C -0.01 -0.51 3.88 29.85 0.12 -0.40 16 10 C -0.09 -3.10 4.53 30.59 0.14 -2.96 16 11 C -0.09 -2.28 2.90 -9.71 -0.03 -2.31 16 12 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 13 C -0.12 -2.76 5.51 31.32 0.17 -2.59 16 14 C -0.14 -2.55 5.92 31.32 0.19 -2.36 16 15 C 0.07 1.58 0.97 -9.72 -0.01 1.57 16 16 F -0.18 -4.24 16.93 44.97 0.76 -3.48 16 17 C 0.44 9.31 2.46 71.98 0.18 9.49 16 18 F -0.18 -3.74 17.11 44.97 0.77 -2.97 16 19 F -0.18 -4.02 17.15 44.97 0.77 -3.25 16 20 F -0.17 -3.45 15.78 44.97 0.71 -2.74 16 21 C -0.13 -3.01 5.37 31.89 0.17 -2.84 16 22 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 23 H 0.02 0.72 7.20 -2.39 -0.02 0.70 16 24 H 0.03 1.06 6.91 -2.39 -0.02 1.05 16 25 H 0.06 1.98 8.05 -2.39 -0.02 1.96 16 26 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.08 1.91 7.77 -2.39 -0.02 1.89 16 28 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.10 1.70 7.30 -2.38 -0.02 1.68 16 30 H 0.10 1.71 8.12 -2.38 -0.02 1.69 16 31 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.11 2.24 7.32 -2.38 -0.02 2.23 16 Total: -1.00 -63.66 277.35 7.90 -55.76 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: 1.07 Total: 2.72 kcal Atomic # 6 Polarization: -33.42 SS G_CDS: 1.63 Total: -31.79 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: 0.30 Total: -59.66 kcal Atomic # 9 Polarization: -15.44 SS G_CDS: 3.01 Total: -12.43 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.40 kcal Total: -63.66 7.90 -55.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115356.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.836 kcal (2) G-P(sol) polarization free energy of solvation -63.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -253.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds