Wall clock time and date at job start Mon Mar 30 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99807 * 2 1 4 4 H 1.48500 * 109.47157 * 239.99665 * 3 2 1 5 5 H 1.48489 * 109.47426 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46884 * 120.00162 * 3 2 1 7 7 C 1.37875 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00341 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00038 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.46633 * 60.00281 * 9 7 2 11 11 C 1.53001 * 109.47070 * 300.00197 * 9 7 2 12 12 C 1.52995 * 109.46856 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.46931 * 60.00332 * 12 11 9 14 14 C 1.53001 * 109.47080 * 299.99531 * 13 12 11 15 15 H 1.08997 * 109.47005 * 300.00115 * 14 13 12 16 16 C 1.53000 * 109.47080 * 179.97438 * 14 13 12 17 17 H 1.08996 * 109.47018 * 54.05645 * 16 14 13 18 18 F 1.39903 * 109.47337 * 294.05475 * 16 14 13 19 19 C 1.53001 * 109.47051 * 174.05348 * 16 14 13 20 20 F 1.39905 * 109.46943 * 65.92129 * 19 16 14 21 21 F 1.39898 * 109.47072 * 185.91350 * 19 16 14 22 22 F 1.39898 * 109.47455 * 305.92025 * 19 16 14 23 23 C 1.52995 * 109.46856 * 60.00423 * 14 13 12 24 24 H 0.97001 * 120.00241 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47005 * 299.99854 * 11 9 7 26 26 H 1.09002 * 109.46680 * 60.00122 * 11 9 7 27 27 H 1.08999 * 109.46860 * 180.02562 * 12 11 9 28 28 H 1.08997 * 109.47565 * 299.99965 * 12 11 9 29 29 H 1.09000 * 109.47236 * 179.97438 * 13 12 11 30 30 H 1.08997 * 109.47294 * 60.00026 * 13 12 11 31 31 H 1.09005 * 109.47280 * 180.02562 * 23 14 13 32 32 H 1.08997 * 109.47829 * 59.99553 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 6 0.3718 -2.5805 1.2490 12 6 -0.3936 -3.9053 1.2486 13 6 0.6003 -5.0685 1.2478 14 6 1.4795 -4.9871 -0.0018 15 1 0.8525 -5.0443 -0.8915 16 6 2.4739 -6.1500 -0.0023 17 1 1.9332 -7.0904 0.1042 18 9 3.3658 -6.0014 1.0653 19 6 3.2517 -6.1553 -1.3198 20 9 4.0505 -5.0091 -1.3943 21 9 4.0630 -7.2935 -1.3778 22 9 2.3530 -6.1679 -2.3919 23 6 2.2449 -3.6624 -0.0014 24 1 -0.4850 0.8400 0.0004 25 1 0.9988 -2.5230 2.1387 26 1 -0.3365 -1.7520 1.2494 27 1 -1.0202 -3.9630 2.1386 28 1 -1.0206 -3.9624 0.3589 29 1 0.0551 -6.0123 1.2480 30 1 1.2273 -5.0113 2.1376 31 1 2.8710 -3.6042 -0.8918 32 1 2.8719 -3.6052 0.8884 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261115994.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:20 Heat of formation + Delta-G solvation = -230.190617 kcal Electronic energy + Delta-G solvation = -20214.405168 eV Core-core repulsion = 16480.221586 eV Total energy + Delta-G solvation = -3734.183582 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.20845 -48.05595 -47.62130 -47.32696 -37.81379 -33.31648 -31.62014 -29.87447 -27.83056 -24.85553 -23.43445 -21.33480 -20.72855 -18.96095 -18.53733 -18.34403 -17.85902 -16.35660 -15.87570 -15.09706 -14.66945 -14.42406 -14.36812 -14.14502 -14.03455 -13.91879 -13.68190 -13.49017 -13.34669 -12.83260 -12.52113 -11.96604 -11.77112 -11.21882 -11.01913 -10.91424 -10.64667 -10.53035 -10.34290 -10.11852 -9.80780 -9.36342 -8.96197 -8.64709 -8.27283 -5.96003 -4.01690 2.56654 3.34213 3.38425 3.41817 3.61598 3.88130 3.98320 4.43868 4.52478 4.73206 4.95646 5.31800 5.36754 5.48961 5.78135 6.00774 6.20391 6.21530 6.40362 6.53967 6.66021 6.71956 6.87177 7.12259 7.25031 7.50752 7.77640 8.01899 8.16767 8.48880 9.01872 9.62783 11.09654 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.027185 B = 0.007102 C = 0.006268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.734363 B = 3941.876042 C = 4465.805355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.054 3.946 10 H 0.025 0.975 11 C -0.113 4.113 12 C -0.117 4.117 13 C -0.104 4.104 14 C -0.118 4.118 15 H 0.095 0.905 16 C 0.062 3.938 17 H 0.120 0.880 18 F -0.177 7.177 19 C 0.430 3.570 20 F -0.162 7.162 21 F -0.184 7.184 22 F -0.172 7.172 23 C -0.120 4.120 24 H 0.260 0.740 25 H 0.034 0.966 26 H 0.092 0.908 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.036 -13.111 -0.179 13.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.550 4.550 8 H 0.072 0.928 9 C 0.035 3.965 10 H 0.043 0.957 11 C -0.151 4.151 12 C -0.154 4.154 13 C -0.142 4.142 14 C -0.137 4.137 15 H 0.113 0.887 16 C 0.024 3.976 17 H 0.138 0.862 18 F -0.158 7.158 19 C 0.376 3.624 20 F -0.143 7.143 21 F -0.166 7.166 22 F -0.154 7.154 23 C -0.158 4.158 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.110 0.890 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.928 -12.974 -0.183 13.118 hybrid contribution 0.705 0.842 -0.172 1.112 sum 2.633 -12.132 -0.355 12.420 Atomic orbital electron populations 1.69860 1.05827 1.26403 1.50964 1.24946 0.94838 0.98965 0.95204 0.86701 0.79639 0.83308 0.78616 1.20323 1.21361 1.20340 1.21167 0.92909 0.90627 1.50268 0.92775 1.18597 0.92362 0.91150 0.94344 0.95682 1.21656 0.99599 0.95050 0.98796 1.21598 0.97193 0.96322 1.00325 1.21498 0.97544 0.98698 0.96429 1.22007 0.95926 0.94155 1.01602 0.88684 1.22933 0.89185 1.05288 0.80171 0.86230 1.92903 1.69602 1.97362 1.55925 1.21182 0.79026 0.74063 0.88178 1.93211 1.74983 1.49428 1.96702 1.93191 1.74865 1.51636 1.96895 1.93198 1.67385 1.96188 1.58613 1.22030 0.99069 0.92526 1.02141 0.93047 0.94706 0.88968 0.93455 0.92763 0.93078 0.91709 0.91621 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.22 11.32 55.43 0.63 -24.59 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.00 8.56 -34.44 -0.29 -14.30 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.05 1.31 2.10 -91.77 -0.19 1.11 16 10 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 11 C -0.11 -2.57 4.98 -26.73 -0.13 -2.71 16 12 C -0.12 -2.11 5.92 -26.73 -0.16 -2.27 16 13 C -0.10 -1.61 5.13 -26.73 -0.14 -1.75 16 14 C -0.12 -1.90 1.95 -90.62 -0.18 -2.08 16 15 H 0.09 1.49 7.48 -51.93 -0.39 1.10 16 16 C 0.06 0.84 3.07 -26.73 -0.08 0.76 16 17 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 18 F -0.18 -2.73 15.96 2.25 0.04 -2.69 16 19 C 0.43 6.18 2.89 37.16 0.11 6.29 16 20 F -0.16 -2.72 14.14 2.25 0.03 -2.68 16 21 F -0.18 -2.52 17.32 2.25 0.04 -2.48 16 22 F -0.17 -2.46 16.46 2.25 0.04 -2.42 16 23 C -0.12 -2.45 3.73 -26.73 -0.10 -2.55 16 24 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 1.02 7.96 -51.93 -0.41 0.61 16 31 H 0.07 1.36 5.49 -51.93 -0.29 1.08 16 32 H 0.06 1.24 7.66 -51.93 -0.40 0.84 16 LS Contribution 269.25 15.07 4.06 4.06 Total: -1.00 -27.91 269.25 -5.33 -33.25 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: -3.88 Total: -2.92 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -1.26 Total: -15.88 kcal Atomic # 7 Polarization: -25.22 SS G_CDS: 0.63 Total: -24.59 kcal Atomic # 9 Polarization: -10.42 SS G_CDS: 0.14 Total: -10.28 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.91 -5.33 -33.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115994.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.945 kcal (2) G-P(sol) polarization free energy of solvation -27.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds