Wall clock time and date at job start Mon Mar 30 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99807 * 2 1 4 4 H 1.48500 * 109.47157 * 239.99665 * 3 2 1 5 5 H 1.48489 * 109.47426 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46884 * 120.00162 * 3 2 1 7 7 C 1.37875 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00341 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00038 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.46633 * 60.00281 * 9 7 2 11 11 C 1.53001 * 109.47070 * 300.00197 * 9 7 2 12 12 C 1.52995 * 109.46856 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.46931 * 60.00332 * 12 11 9 14 14 C 1.53001 * 109.47080 * 299.99531 * 13 12 11 15 15 H 1.08997 * 109.47005 * 300.00115 * 14 13 12 16 16 C 1.53000 * 109.47080 * 179.97438 * 14 13 12 17 17 H 1.08996 * 109.47018 * 54.05645 * 16 14 13 18 18 F 1.39903 * 109.47337 * 294.05475 * 16 14 13 19 19 C 1.53001 * 109.47051 * 174.05348 * 16 14 13 20 20 F 1.39905 * 109.46943 * 65.92129 * 19 16 14 21 21 F 1.39898 * 109.47072 * 185.91350 * 19 16 14 22 22 F 1.39898 * 109.47455 * 305.92025 * 19 16 14 23 23 C 1.52995 * 109.46856 * 60.00423 * 14 13 12 24 24 H 0.97001 * 120.00241 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47005 * 299.99854 * 11 9 7 26 26 H 1.09002 * 109.46680 * 60.00122 * 11 9 7 27 27 H 1.08999 * 109.46860 * 180.02562 * 12 11 9 28 28 H 1.08997 * 109.47565 * 299.99965 * 12 11 9 29 29 H 1.09000 * 109.47236 * 179.97438 * 13 12 11 30 30 H 1.08997 * 109.47294 * 60.00026 * 13 12 11 31 31 H 1.09005 * 109.47280 * 180.02562 * 23 14 13 32 32 H 1.08997 * 109.47829 * 59.99553 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 6 0.3718 -2.5805 1.2490 12 6 -0.3936 -3.9053 1.2486 13 6 0.6003 -5.0685 1.2478 14 6 1.4795 -4.9871 -0.0018 15 1 0.8525 -5.0443 -0.8915 16 6 2.4739 -6.1500 -0.0023 17 1 1.9332 -7.0904 0.1042 18 9 3.3658 -6.0014 1.0653 19 6 3.2517 -6.1553 -1.3198 20 9 4.0505 -5.0091 -1.3943 21 9 4.0630 -7.2935 -1.3778 22 9 2.3530 -6.1679 -2.3919 23 6 2.2449 -3.6624 -0.0014 24 1 -0.4850 0.8400 0.0004 25 1 0.9988 -2.5230 2.1387 26 1 -0.3365 -1.7520 1.2494 27 1 -1.0202 -3.9630 2.1386 28 1 -1.0206 -3.9624 0.3589 29 1 0.0551 -6.0123 1.2480 30 1 1.2273 -5.0113 2.1376 31 1 2.8710 -3.6042 -0.8918 32 1 2.8719 -3.6052 0.8884 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261115994.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:20 Heat of formation + Delta-G solvation = -244.465554 kcal Electronic energy + Delta-G solvation = -20215.024176 eV Core-core repulsion = 16480.221586 eV Total energy + Delta-G solvation = -3734.802590 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -51.35148 -49.19185 -48.76091 -48.48812 -39.36150 -35.16822 -33.13215 -31.62100 -29.18182 -26.82989 -24.70389 -22.90739 -22.18870 -20.50052 -19.73257 -19.52491 -19.03523 -18.31022 -17.08448 -16.65851 -16.25211 -15.86964 -15.53691 -15.39258 -15.21815 -15.06414 -14.90355 -14.83709 -14.70257 -14.49537 -14.27040 -13.50921 -13.35475 -12.84465 -12.68085 -12.50329 -12.35190 -12.02171 -11.89162 -11.74303 -11.60871 -11.18911 -10.70896 -10.49310 -10.31519 -8.07187 -6.20360 1.40156 1.40758 1.45903 1.48530 2.42993 2.50642 2.75785 2.86053 3.18954 3.39124 3.65391 3.75494 4.02579 4.27230 4.43287 4.61295 4.74061 4.79453 4.87982 4.96698 5.10899 5.19624 5.35609 5.41889 5.52064 5.64610 5.72431 6.05680 6.23298 6.43759 6.91417 7.47021 8.96174 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.027185 B = 0.007102 C = 0.006268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.734363 B = 3941.876042 C = 4465.805355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.014 3.986 3 Si 0.947 3.053 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.045 0.955 9 C 0.050 3.950 10 H -0.003 1.003 11 C -0.108 4.108 12 C -0.111 4.111 13 C -0.098 4.098 14 C -0.116 4.116 15 H 0.102 0.898 16 C 0.069 3.931 17 H 0.172 0.828 18 F -0.187 7.187 19 C 0.429 3.571 20 F -0.182 7.182 21 F -0.178 7.178 22 F -0.172 7.172 23 C -0.112 4.112 24 H 0.260 0.740 25 H 0.023 0.977 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.930 -14.869 0.204 14.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.184 4.184 3 Si 0.773 3.227 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.575 4.575 8 H 0.063 0.937 9 C 0.031 3.969 10 H 0.015 0.985 11 C -0.146 4.146 12 C -0.149 4.149 13 C -0.135 4.135 14 C -0.135 4.135 15 H 0.120 0.880 16 C 0.032 3.968 17 H 0.189 0.811 18 F -0.167 7.167 19 C 0.374 3.626 20 F -0.163 7.163 21 F -0.159 7.159 22 F -0.153 7.153 23 C -0.150 4.150 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.829 -14.741 0.200 14.855 hybrid contribution 0.745 1.416 -0.325 1.633 sum 2.573 -13.324 -0.124 13.571 Atomic orbital electron populations 1.69992 1.06902 1.27022 1.51414 1.25668 0.95689 1.02059 0.94996 0.85784 0.78573 0.79667 0.78678 1.19950 1.20696 1.19880 1.21578 0.92818 0.92646 1.50410 0.93718 1.18566 0.92858 0.91704 0.93744 0.98535 1.21467 0.98777 0.96994 0.97373 1.21503 0.97544 0.94610 1.01238 1.21475 0.96935 0.99427 0.95696 1.21911 0.96306 0.92643 1.02608 0.87965 1.23065 0.88341 1.06200 0.79181 0.81103 1.92890 1.70050 1.97473 1.56326 1.21361 0.78956 0.73600 0.88689 1.93174 1.75626 1.50703 1.96820 1.93204 1.74755 1.51092 1.96895 1.93201 1.67244 1.96150 1.58724 1.21814 0.98201 0.93861 1.01078 0.93081 0.95847 0.92514 0.91548 0.92842 0.88438 0.91869 0.92575 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.02 11.32 21.45 0.24 -52.78 16 2 C 0.01 0.82 5.30 84.65 0.45 1.26 16 3 Si 0.95 44.53 29.54 68.60 2.03 46.56 16 4 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 7 C -0.54 -30.27 8.56 25.60 0.22 -30.06 16 8 H 0.04 2.53 7.74 -2.91 -0.02 2.50 16 9 C 0.05 2.47 2.10 -11.54 -0.02 2.45 16 10 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 11 C -0.11 -5.00 4.98 30.59 0.15 -4.84 16 12 C -0.11 -3.83 5.92 30.59 0.18 -3.65 16 13 C -0.10 -2.68 5.13 30.59 0.16 -2.53 16 14 C -0.12 -3.45 1.95 -10.79 -0.02 -3.47 16 15 H 0.10 2.95 7.48 -2.39 -0.02 2.93 16 16 C 0.07 1.65 3.07 30.59 0.09 1.74 16 17 H 0.17 2.44 8.14 -2.39 -0.02 2.42 16 18 F -0.19 -5.24 15.96 44.97 0.72 -4.52 16 19 C 0.43 11.38 2.89 71.98 0.21 11.59 16 20 F -0.18 -5.99 14.14 44.97 0.64 -5.35 16 21 F -0.18 -4.41 17.32 44.97 0.78 -3.63 16 22 F -0.17 -4.53 16.46 44.97 0.74 -3.79 16 23 C -0.11 -4.56 3.73 30.59 0.11 -4.45 16 24 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 25 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.06 3.01 6.07 -2.39 -0.01 3.00 16 27 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 1.79 7.96 -2.39 -0.02 1.77 16 31 H 0.06 2.36 5.49 -2.38 -0.01 2.35 16 32 H 0.05 1.99 7.66 -2.39 -0.02 1.97 16 Total: -1.00 -62.15 269.25 7.80 -54.35 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: 1.13 Total: 1.13 kcal Atomic # 6 Polarization: -33.48 SS G_CDS: 1.53 Total: -31.95 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.24 Total: -52.78 kcal Atomic # 9 Polarization: -20.17 SS G_CDS: 2.87 Total: -17.30 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -62.15 7.80 -54.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115994.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.117 kcal (2) G-P(sol) polarization free energy of solvation -62.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds