Wall clock time and date at job start Mon Mar 30 2020 06:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99781 * 2 1 4 4 H 1.48499 * 109.46950 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47212 * 300.00494 * 3 2 1 6 6 H 1.48505 * 109.46620 * 60.00514 * 3 2 1 7 7 C 1.37873 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99879 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00167 * 359.97438 * 7 2 1 10 10 H 1.09008 * 109.47221 * 60.00182 * 9 7 2 11 11 C 1.53004 * 109.47527 * 300.00424 * 9 7 2 12 12 C 1.53005 * 109.46763 * 299.99925 * 11 9 7 13 13 C 1.52994 * 109.47021 * 299.99800 * 12 11 9 14 14 C 1.53002 * 109.47372 * 60.00123 * 13 12 11 15 15 H 1.08999 * 109.46599 * 59.99673 * 14 13 12 16 16 C 1.52998 * 109.47091 * 179.97438 * 14 13 12 17 17 H 1.09003 * 109.47158 * 305.91835 * 16 14 13 18 18 F 1.39903 * 109.47280 * 65.91417 * 16 14 13 19 19 C 1.52994 * 109.46963 * 185.91407 * 16 14 13 20 20 F 1.39905 * 109.47477 * 54.09046 * 19 16 14 21 21 F 1.39898 * 109.47322 * 294.08628 * 19 16 14 22 22 F 1.39906 * 109.47178 * 174.08887 * 19 16 14 23 23 C 1.52995 * 109.46845 * 299.99795 * 14 13 12 24 24 H 0.97002 * 120.00033 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47394 * 179.97438 * 11 9 7 26 26 H 1.08998 * 109.46971 * 59.99635 * 11 9 7 27 27 H 1.09000 * 109.46630 * 179.97438 * 12 11 9 28 28 H 1.09000 * 109.46745 * 60.00278 * 12 11 9 29 29 H 1.09001 * 109.47279 * 299.99629 * 13 12 11 30 30 H 1.09003 * 109.46796 * 180.02562 * 13 12 11 31 31 H 1.09006 * 109.46928 * 179.97438 * 23 14 13 32 32 H 1.09000 * 109.47468 * 299.99925 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6240 -2.5567 -0.8904 11 6 0.3718 -2.5805 1.2490 12 6 1.2519 -2.4997 2.4980 13 6 2.2461 -3.6626 2.4973 14 6 3.1253 -3.5813 1.2478 15 1 3.6702 -2.6373 1.2479 16 6 4.1199 -4.7438 1.2476 17 1 4.6751 -4.7473 2.1856 18 9 3.4262 -5.9511 1.1119 19 6 5.0940 -4.5813 0.0790 20 9 5.6893 -3.3167 0.1404 21 9 4.3997 -4.7117 -1.1285 22 9 6.0839 -5.5669 0.1565 23 6 2.2453 -3.6621 -0.0011 24 1 -0.4850 0.8401 0.0004 25 1 -0.1735 -3.5243 1.2487 26 1 -0.3365 -1.7520 1.2494 27 1 0.6254 -2.5572 3.3881 28 1 1.7968 -1.5557 2.4980 29 1 1.7011 -4.6066 2.4974 30 1 2.8728 -3.6052 3.3874 31 1 2.8716 -3.6037 -0.8913 32 1 1.7003 -4.6060 -0.0011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261115995.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:23 Heat of formation + Delta-G solvation = -227.509117 kcal Electronic energy + Delta-G solvation = -20540.877729 eV Core-core repulsion = 16806.810425 eV Total energy + Delta-G solvation = -3734.067304 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.12600 -47.97003 -47.55184 -47.24545 -37.86747 -33.12372 -31.41059 -29.80248 -27.72385 -24.92597 -23.35740 -21.45727 -20.69876 -18.85800 -18.47159 -18.26086 -17.74967 -15.97068 -15.66115 -15.33016 -14.57243 -14.40664 -14.31365 -14.12645 -13.94202 -13.79822 -13.60214 -13.40593 -13.18196 -12.84424 -12.40139 -11.79738 -11.64996 -11.08450 -10.95013 -10.85578 -10.78455 -10.56900 -10.32456 -10.12158 -9.62523 -9.15445 -8.94445 -8.61659 -8.26413 -5.97156 -4.02105 2.66191 3.28844 3.37995 3.41383 3.70068 3.98971 4.07312 4.44258 4.62945 4.84653 5.08237 5.33438 5.53724 5.62402 5.98332 6.22618 6.37159 6.41616 6.50754 6.68398 6.73244 6.79670 6.95040 7.15045 7.44349 7.54576 7.74302 7.92694 8.16066 8.47097 9.00555 9.61647 11.08587 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.025833 B = 0.008473 C = 0.007256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.622386 B = 3303.692903 C = 3857.902733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.882 3.118 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.503 4.503 8 H 0.055 0.945 9 C 0.047 3.953 10 H 0.028 0.972 11 C -0.111 4.111 12 C -0.101 4.101 13 C -0.101 4.101 14 C -0.108 4.108 15 H 0.109 0.891 16 C 0.058 3.942 17 H 0.119 0.881 18 F -0.181 7.181 19 C 0.431 3.569 20 F -0.169 7.169 21 F -0.165 7.165 22 F -0.186 7.186 23 C -0.118 4.118 24 H 0.258 0.742 25 H 0.015 0.985 26 H 0.091 0.909 27 H 0.036 0.964 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.545 -8.263 3.914 11.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.711 3.289 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.542 4.542 8 H 0.073 0.927 9 C 0.029 3.971 10 H 0.046 0.954 11 C -0.149 4.149 12 C -0.138 4.138 13 C -0.139 4.139 14 C -0.126 4.126 15 H 0.127 0.873 16 C 0.020 3.980 17 H 0.137 0.863 18 F -0.162 7.162 19 C 0.376 3.624 20 F -0.151 7.151 21 F -0.146 7.146 22 F -0.168 7.168 23 C -0.155 4.155 24 H 0.068 0.932 25 H 0.033 0.967 26 H 0.109 0.891 27 H 0.055 0.945 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.402 -8.167 3.877 11.684 hybrid contribution 0.667 0.865 -0.208 1.112 sum 8.069 -7.303 3.669 11.485 Atomic orbital electron populations 1.69880 1.05823 1.26105 1.51041 1.24928 0.94746 0.98799 0.95386 0.86685 0.80318 0.84396 0.77543 1.19765 1.21160 1.21148 1.21173 0.92691 0.90445 1.49844 0.92667 1.18654 0.92487 0.91579 0.94373 0.95419 1.21543 0.98812 0.99486 0.95019 1.21347 0.96953 0.97768 0.97760 1.21460 0.97651 1.00178 0.94589 1.21894 0.95948 0.95244 0.99554 0.87256 1.23060 0.93675 0.85333 0.95932 0.86310 1.92879 1.80528 1.46016 1.96764 1.21183 0.81272 0.74179 0.85745 1.93220 1.84793 1.40614 1.96442 1.93177 1.78169 1.95312 1.47976 1.93185 1.64443 1.62678 1.96473 1.21924 0.98696 0.99944 0.94978 0.93185 0.96667 0.89075 0.94481 0.90958 0.92522 0.93277 0.91716 0.93701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.66 11.32 55.43 0.63 -24.03 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 3 Si 0.88 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.50 -12.97 6.61 -34.44 -0.23 -13.19 16 8 H 0.06 1.42 6.71 -52.49 -0.35 1.06 16 9 C 0.05 1.13 2.59 -91.77 -0.24 0.90 16 10 H 0.03 0.74 8.14 -51.92 -0.42 0.31 16 11 C -0.11 -2.51 5.24 -26.73 -0.14 -2.65 16 12 C -0.10 -1.98 5.70 -26.73 -0.15 -2.14 16 13 C -0.10 -1.69 5.13 -26.73 -0.14 -1.83 16 14 C -0.11 -1.88 1.72 -90.62 -0.16 -2.03 16 15 H 0.11 2.04 5.95 -51.93 -0.31 1.73 16 16 C 0.06 0.84 3.07 -26.74 -0.08 0.76 16 17 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 18 F -0.18 -2.84 15.96 2.25 0.04 -2.80 16 19 C 0.43 6.58 2.89 37.15 0.11 6.69 16 20 F -0.17 -2.69 16.46 2.25 0.04 -2.66 16 21 F -0.17 -2.81 14.14 2.25 0.03 -2.78 16 22 F -0.19 -2.67 17.32 2.25 0.04 -2.63 16 23 C -0.12 -2.39 4.00 -26.73 -0.11 -2.49 16 24 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 25 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.56 7.22 -51.93 -0.37 1.18 16 29 H 0.06 0.93 7.96 -51.93 -0.41 0.51 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.33 5.49 -51.93 -0.29 1.05 16 32 H 0.04 0.88 7.67 -51.93 -0.40 0.48 16 LS Contribution 264.40 15.07 3.98 3.98 Total: -1.00 -26.83 264.40 -5.19 -32.02 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: -3.70 Total: -2.41 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -1.23 Total: -14.43 kcal Atomic # 7 Polarization: -24.66 SS G_CDS: 0.63 Total: -24.03 kcal Atomic # 9 Polarization: -11.01 SS G_CDS: 0.14 Total: -10.87 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -26.83 -5.19 -32.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115995.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.492 kcal (2) G-P(sol) polarization free energy of solvation -26.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds