Wall clock time and date at job start Mon Mar 30 2020 06:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99781 * 2 1 4 4 H 1.48499 * 109.46950 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47212 * 300.00494 * 3 2 1 6 6 H 1.48505 * 109.46620 * 60.00514 * 3 2 1 7 7 C 1.37873 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99879 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00167 * 359.97438 * 7 2 1 10 10 H 1.09008 * 109.47221 * 60.00182 * 9 7 2 11 11 C 1.53004 * 109.47527 * 300.00424 * 9 7 2 12 12 C 1.53005 * 109.46763 * 299.99925 * 11 9 7 13 13 C 1.52994 * 109.47021 * 299.99800 * 12 11 9 14 14 C 1.53002 * 109.47372 * 60.00123 * 13 12 11 15 15 H 1.08999 * 109.46599 * 59.99673 * 14 13 12 16 16 C 1.52998 * 109.47091 * 179.97438 * 14 13 12 17 17 H 1.09003 * 109.47158 * 305.91835 * 16 14 13 18 18 F 1.39903 * 109.47280 * 65.91417 * 16 14 13 19 19 C 1.52994 * 109.46963 * 185.91407 * 16 14 13 20 20 F 1.39905 * 109.47477 * 54.09046 * 19 16 14 21 21 F 1.39898 * 109.47322 * 294.08628 * 19 16 14 22 22 F 1.39906 * 109.47178 * 174.08887 * 19 16 14 23 23 C 1.52995 * 109.46845 * 299.99795 * 14 13 12 24 24 H 0.97002 * 120.00033 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47394 * 179.97438 * 11 9 7 26 26 H 1.08998 * 109.46971 * 59.99635 * 11 9 7 27 27 H 1.09000 * 109.46630 * 179.97438 * 12 11 9 28 28 H 1.09000 * 109.46745 * 60.00278 * 12 11 9 29 29 H 1.09001 * 109.47279 * 299.99629 * 13 12 11 30 30 H 1.09003 * 109.46796 * 180.02562 * 13 12 11 31 31 H 1.09006 * 109.46928 * 179.97438 * 23 14 13 32 32 H 1.09000 * 109.47468 * 299.99925 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6240 -2.5567 -0.8904 11 6 0.3718 -2.5805 1.2490 12 6 1.2519 -2.4997 2.4980 13 6 2.2461 -3.6626 2.4973 14 6 3.1253 -3.5813 1.2478 15 1 3.6702 -2.6373 1.2479 16 6 4.1199 -4.7438 1.2476 17 1 4.6751 -4.7473 2.1856 18 9 3.4262 -5.9511 1.1119 19 6 5.0940 -4.5813 0.0790 20 9 5.6893 -3.3167 0.1404 21 9 4.3997 -4.7117 -1.1285 22 9 6.0839 -5.5669 0.1565 23 6 2.2453 -3.6621 -0.0011 24 1 -0.4850 0.8401 0.0004 25 1 -0.1735 -3.5243 1.2487 26 1 -0.3365 -1.7520 1.2494 27 1 0.6254 -2.5572 3.3881 28 1 1.7968 -1.5557 2.4980 29 1 1.7011 -4.6066 2.4974 30 1 2.8728 -3.6052 3.3874 31 1 2.8716 -3.6037 -0.8913 32 1 1.7003 -4.6060 -0.0011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261115995.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:23 Heat of formation + Delta-G solvation = -240.645347 kcal Electronic energy + Delta-G solvation = -20541.447359 eV Core-core repulsion = 16806.810425 eV Total energy + Delta-G solvation = -3734.636933 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -51.33515 -49.17002 -48.74689 -48.46869 -39.48030 -34.91494 -33.00145 -31.51555 -29.12811 -26.90996 -24.68023 -23.05833 -22.14755 -20.54519 -19.72750 -19.49149 -18.97777 -17.75721 -17.10408 -16.71903 -16.35228 -15.80734 -15.52142 -15.41043 -15.18558 -15.02696 -14.86422 -14.80190 -14.67325 -14.61753 -13.99282 -13.41494 -13.28251 -12.85420 -12.66010 -12.36945 -12.30328 -12.21331 -11.89771 -11.81077 -11.38725 -10.91616 -10.70879 -10.44301 -10.23510 -8.01385 -6.11820 1.40740 1.44942 1.48190 1.54027 2.47146 2.52048 2.79459 2.87752 3.26618 3.44390 3.68451 3.80854 4.10886 4.30931 4.51786 4.71866 4.83196 4.89993 4.96818 4.99601 5.15318 5.19208 5.41489 5.42513 5.69086 5.76931 5.77685 5.98949 6.25397 6.46567 6.98565 7.54520 9.03613 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.025833 B = 0.008473 C = 0.007256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.622386 B = 3303.692903 C = 3857.902733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.014 3.986 3 Si 0.939 3.061 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.504 4.504 8 H 0.056 0.944 9 C 0.042 3.958 10 H -0.015 1.015 11 C -0.108 4.108 12 C -0.097 4.097 13 C -0.095 4.095 14 C -0.106 4.106 15 H 0.099 0.901 16 C 0.067 3.933 17 H 0.166 0.834 18 F -0.185 7.185 19 C 0.429 3.571 20 F -0.174 7.174 21 F -0.180 7.180 22 F -0.178 7.178 23 C -0.112 4.112 24 H 0.256 0.744 25 H 0.023 0.977 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.213 -9.036 5.488 14.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.184 4.184 3 Si 0.766 3.234 4 H -0.189 1.189 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.542 4.542 8 H 0.074 0.926 9 C 0.023 3.977 10 H 0.003 0.997 11 C -0.146 4.146 12 C -0.134 4.134 13 C -0.133 4.133 14 C -0.125 4.125 15 H 0.117 0.883 16 C 0.030 3.970 17 H 0.183 0.817 18 F -0.166 7.166 19 C 0.375 3.625 20 F -0.155 7.155 21 F -0.161 7.161 22 F -0.160 7.160 23 C -0.149 4.149 24 H 0.066 0.934 25 H 0.042 0.958 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.083 -8.950 5.452 13.868 hybrid contribution 0.114 1.084 -0.758 1.328 sum 9.197 -7.865 4.694 12.980 Atomic orbital electron populations 1.70029 1.07107 1.26563 1.52222 1.25613 0.95411 1.01815 0.95512 0.85781 0.79497 0.80834 0.77250 1.18932 1.21565 1.20757 1.21404 0.92728 0.91263 1.48798 0.92630 1.18637 0.92995 0.92757 0.93282 0.99714 1.21420 0.98613 0.98406 0.96167 1.21253 0.97250 0.98300 0.96625 1.21429 0.97289 0.98885 0.95649 1.21762 0.96139 0.96315 0.98289 0.88318 1.23092 0.92790 0.83672 0.97460 0.81658 1.92879 1.80692 1.46126 1.96870 1.21348 0.81575 0.74122 0.85495 1.93212 1.84891 1.41009 1.96419 1.93150 1.78551 1.95368 1.49080 1.93202 1.64109 1.62280 1.96392 1.21768 0.98223 0.98239 0.96677 0.93423 0.95829 0.92571 0.92679 0.93099 0.91615 0.89401 0.92519 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.38 11.32 21.45 0.24 -52.13 16 2 C 0.01 0.78 5.30 84.65 0.45 1.23 16 3 Si 0.94 42.82 29.54 68.60 2.03 44.85 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.50 -26.23 6.61 25.60 0.17 -26.06 16 8 H 0.06 2.84 6.71 -2.91 -0.02 2.82 16 9 C 0.04 2.04 2.59 -11.54 -0.03 2.01 16 10 H -0.02 -0.86 8.14 -2.38 -0.02 -0.88 16 11 C -0.11 -4.93 5.24 30.60 0.16 -4.77 16 12 C -0.10 -3.65 5.70 30.59 0.17 -3.48 16 13 C -0.10 -2.84 5.13 30.59 0.16 -2.68 16 14 C -0.11 -3.43 1.72 -10.80 -0.02 -3.45 16 15 H 0.10 3.45 5.95 -2.39 -0.01 3.44 16 16 C 0.07 1.70 3.07 30.59 0.09 1.80 16 17 H 0.17 2.78 8.14 -2.39 -0.02 2.76 16 18 F -0.19 -5.15 15.96 44.97 0.72 -4.43 16 19 C 0.43 12.05 2.89 71.98 0.21 12.26 16 20 F -0.17 -5.16 16.46 44.97 0.74 -4.42 16 21 F -0.18 -5.92 14.14 44.97 0.64 -5.29 16 22 F -0.18 -4.61 17.32 44.97 0.78 -3.83 16 23 C -0.11 -4.45 4.00 30.59 0.12 -4.33 16 24 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 25 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 2.96 6.07 -2.39 -0.01 2.95 16 27 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.05 2.13 7.22 -2.39 -0.02 2.11 16 29 H 0.07 1.88 7.96 -2.39 -0.02 1.86 16 30 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.06 2.33 5.49 -2.38 -0.01 2.32 16 32 H 0.05 1.87 7.67 -2.39 -0.02 1.85 16 Total: -1.00 -58.59 264.40 7.76 -50.82 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: 1.14 Total: 1.92 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: 1.49 Total: -27.50 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.24 Total: -52.13 kcal Atomic # 9 Polarization: -20.83 SS G_CDS: 2.87 Total: -17.96 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -58.59 7.76 -50.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115995.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.822 kcal (2) G-P(sol) polarization free energy of solvation -58.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds