Wall clock time and date at job start Mon Mar 30 2020 06:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00048 * 2 1 4 4 H 1.48498 * 109.46953 * 269.99905 * 3 2 1 5 5 H 1.48496 * 109.47221 * 29.99961 * 3 2 1 6 6 H 1.48500 * 109.47065 * 149.99747 * 3 2 1 7 7 C 1.37883 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99642 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99838 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47157 * 59.99339 * 9 7 2 11 11 C 1.52997 * 109.47223 * 299.99788 * 9 7 2 12 12 C 1.53001 * 109.47463 * 180.02562 * 11 9 7 13 13 C 1.52994 * 109.46978 * 59.99980 * 12 11 9 14 14 C 1.53007 * 109.47057 * 300.00356 * 13 12 11 15 15 H 1.09003 * 109.46638 * 299.99647 * 14 13 12 16 16 C 1.53002 * 109.46980 * 180.02562 * 14 13 12 17 17 H 1.09004 * 109.47277 * 185.77026 * 16 14 13 18 18 F 1.39903 * 109.47077 * 305.76918 * 16 14 13 19 19 C 1.52998 * 109.47507 * 65.76888 * 16 14 13 20 20 F 1.39902 * 109.47121 * 54.02407 * 19 16 14 21 21 F 1.39902 * 109.47359 * 174.03128 * 19 16 14 22 22 F 1.39902 * 109.46950 * 294.03108 * 19 16 14 23 23 C 1.52994 * 109.47053 * 179.97438 * 9 7 2 24 24 H 0.96999 * 119.99612 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47228 * 300.00361 * 11 9 7 26 26 H 1.09006 * 109.47062 * 60.00196 * 11 9 7 27 27 H 1.08994 * 109.47327 * 180.02562 * 12 11 9 28 28 H 1.09003 * 109.46707 * 300.00057 * 12 11 9 29 29 H 1.08997 * 109.47108 * 180.02562 * 13 12 11 30 30 H 1.09002 * 109.47572 * 59.99972 * 13 12 11 31 31 H 1.09003 * 109.47338 * 60.00216 * 23 9 7 32 32 H 1.09004 * 109.47158 * 300.00029 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6246 -2.5570 -0.8896 11 6 0.3710 -2.5800 1.2494 12 6 -0.3936 -3.9052 1.2498 13 6 0.6010 -5.0678 1.2507 14 6 1.4811 -4.9870 0.0018 15 1 0.8548 -5.0454 -0.8884 16 6 2.4753 -6.1499 0.0024 17 1 3.1684 -6.0360 -0.8312 18 9 3.1894 -6.1524 1.2055 19 6 1.7160 -7.4702 -0.1426 20 9 0.8965 -7.4149 -1.2751 21 9 2.6295 -8.5211 -0.2787 22 9 0.9276 -7.6819 0.9935 23 6 2.2452 -3.6621 0.0005 24 1 -0.4849 0.8401 -0.0004 25 1 0.9973 -2.5220 2.1397 26 1 -0.3374 -1.7514 1.2490 27 1 -1.0209 -3.9626 2.1393 28 1 -1.0199 -3.9635 0.3596 29 1 0.0563 -6.0119 1.2506 30 1 1.2274 -5.0094 2.1409 31 1 2.8719 -3.6044 0.8906 32 1 2.8719 -3.6043 -0.8895 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261115996.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:26 Heat of formation + Delta-G solvation = -231.193407 kcal Electronic energy + Delta-G solvation = -20056.746415 eV Core-core repulsion = 16322.519348 eV Total energy + Delta-G solvation = -3734.227067 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.32834 -48.11042 -47.74083 -47.42509 -37.81949 -33.34889 -31.59940 -29.93171 -27.87675 -24.88251 -23.44459 -21.41871 -20.70978 -19.00819 -18.69668 -18.39316 -17.86540 -16.38858 -15.92615 -15.16374 -14.75504 -14.53815 -14.44759 -14.26382 -14.12808 -14.01711 -13.81864 -13.44911 -13.19937 -12.85901 -12.57783 -12.05328 -11.78733 -11.21665 -11.07234 -10.95949 -10.65331 -10.50084 -10.37526 -10.05786 -9.82669 -9.41592 -9.01172 -8.68590 -8.30898 -5.99884 -4.06445 2.48468 3.29364 3.36548 3.39599 3.51174 3.82019 3.89180 4.42223 4.53278 4.70666 4.88895 5.29628 5.46366 5.50297 5.83523 6.03309 6.21194 6.29170 6.41012 6.57499 6.58074 6.72510 6.85338 7.05188 7.23960 7.48559 7.73868 7.97846 8.13458 8.43647 8.97326 9.58421 11.05617 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.041227 B = 0.005760 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.002551 B = 4859.623911 C = 5093.258481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.053 3.947 10 H 0.026 0.974 11 C -0.113 4.113 12 C -0.116 4.116 13 C -0.127 4.127 14 C -0.116 4.116 15 H 0.095 0.905 16 C 0.061 3.939 17 H 0.125 0.875 18 F -0.178 7.178 19 C 0.429 3.571 20 F -0.172 7.172 21 F -0.182 7.182 22 F -0.169 7.169 23 C -0.099 4.099 24 H 0.260 0.740 25 H 0.034 0.966 26 H 0.092 0.908 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.131 -13.009 -0.257 13.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.034 3.966 10 H 0.045 0.955 11 C -0.150 4.150 12 C -0.153 4.153 13 C -0.164 4.164 14 C -0.135 4.135 15 H 0.113 0.887 16 C 0.024 3.976 17 H 0.143 0.857 18 F -0.158 7.158 19 C 0.375 3.625 20 F -0.153 7.153 21 F -0.164 7.164 22 F -0.151 7.151 23 C -0.137 4.137 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.110 0.890 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.982 -12.914 -0.222 13.067 hybrid contribution 0.406 0.598 0.036 0.724 sum 2.388 -12.315 -0.186 12.546 Atomic orbital electron populations 1.69877 1.05860 1.26374 1.50738 1.24957 0.94835 0.99019 0.95122 0.86634 0.79916 0.83630 0.78056 1.20746 1.21265 1.19960 1.21189 0.92891 0.90625 1.50559 0.92724 1.18613 0.92406 0.90979 0.94583 0.95548 1.21649 0.99589 0.95172 0.98635 1.21583 0.97237 0.96240 1.00259 1.21874 0.98090 0.99682 0.96743 1.21996 0.96054 0.93913 1.01524 0.88687 1.23009 0.95485 0.92030 0.87094 0.85724 1.92898 1.79076 1.96869 1.46965 1.21307 0.78921 0.87925 0.74374 1.93202 1.73820 1.96542 1.51762 1.93201 1.66574 1.61035 1.95578 1.93152 1.75352 1.95444 1.51103 1.21673 0.98756 0.92264 1.00957 0.93033 0.94710 0.88991 0.93529 0.92888 0.91798 0.91598 0.92358 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.90 11.32 55.43 0.63 -24.27 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.51 -13.71 8.56 -34.44 -0.29 -14.00 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.24 2.10 -91.78 -0.19 1.05 16 10 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 11 C -0.11 -2.57 4.98 -26.73 -0.13 -2.70 16 12 C -0.12 -2.17 5.92 -26.73 -0.16 -2.33 16 13 C -0.13 -2.11 4.51 -26.73 -0.12 -2.23 16 14 C -0.12 -1.87 1.95 -90.64 -0.18 -2.04 16 15 H 0.09 1.49 7.48 -51.93 -0.39 1.10 16 16 C 0.06 0.84 3.07 -26.73 -0.08 0.75 16 17 H 0.13 1.38 8.14 -51.93 -0.42 0.96 16 18 F -0.18 -2.70 15.96 2.25 0.04 -2.66 16 19 C 0.43 5.66 2.89 37.16 0.11 5.77 16 20 F -0.17 -2.26 16.46 2.25 0.04 -2.22 16 21 F -0.18 -2.36 17.32 2.25 0.04 -2.32 16 22 F -0.17 -2.39 14.14 2.25 0.03 -2.36 16 23 C -0.10 -1.91 4.35 -26.76 -0.12 -2.02 16 24 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.98 5.49 -51.93 -0.29 0.70 16 30 H 0.07 1.13 7.67 -51.93 -0.40 0.73 16 31 H 0.06 1.16 7.96 -51.93 -0.41 0.74 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 269.25 15.07 4.06 4.06 Total: -1.00 -27.14 269.25 -5.33 -32.47 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -3.88 Total: -2.44 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -1.26 Total: -16.18 kcal Atomic # 7 Polarization: -24.90 SS G_CDS: 0.63 Total: -24.27 kcal Atomic # 9 Polarization: -9.70 SS G_CDS: 0.14 Total: -9.56 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.14 -5.33 -32.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115996.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.726 kcal (2) G-P(sol) polarization free energy of solvation -27.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds