Wall clock time and date at job start Mon Mar 30 2020 06:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00048 * 2 1 4 4 H 1.48498 * 109.46953 * 269.99905 * 3 2 1 5 5 H 1.48496 * 109.47221 * 29.99961 * 3 2 1 6 6 H 1.48500 * 109.47065 * 149.99747 * 3 2 1 7 7 C 1.37883 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99642 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99838 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47157 * 59.99339 * 9 7 2 11 11 C 1.52997 * 109.47223 * 299.99788 * 9 7 2 12 12 C 1.53001 * 109.47463 * 180.02562 * 11 9 7 13 13 C 1.52994 * 109.46978 * 59.99980 * 12 11 9 14 14 C 1.53007 * 109.47057 * 300.00356 * 13 12 11 15 15 H 1.09003 * 109.46638 * 299.99647 * 14 13 12 16 16 C 1.53002 * 109.46980 * 180.02562 * 14 13 12 17 17 H 1.09004 * 109.47277 * 185.77026 * 16 14 13 18 18 F 1.39903 * 109.47077 * 305.76918 * 16 14 13 19 19 C 1.52998 * 109.47507 * 65.76888 * 16 14 13 20 20 F 1.39902 * 109.47121 * 54.02407 * 19 16 14 21 21 F 1.39902 * 109.47359 * 174.03128 * 19 16 14 22 22 F 1.39902 * 109.46950 * 294.03108 * 19 16 14 23 23 C 1.52994 * 109.47053 * 179.97438 * 9 7 2 24 24 H 0.96999 * 119.99612 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47228 * 300.00361 * 11 9 7 26 26 H 1.09006 * 109.47062 * 60.00196 * 11 9 7 27 27 H 1.08994 * 109.47327 * 180.02562 * 12 11 9 28 28 H 1.09003 * 109.46707 * 300.00057 * 12 11 9 29 29 H 1.08997 * 109.47108 * 180.02562 * 13 12 11 30 30 H 1.09002 * 109.47572 * 59.99972 * 13 12 11 31 31 H 1.09003 * 109.47338 * 60.00216 * 23 9 7 32 32 H 1.09004 * 109.47158 * 300.00029 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6246 -2.5570 -0.8896 11 6 0.3710 -2.5800 1.2494 12 6 -0.3936 -3.9052 1.2498 13 6 0.6010 -5.0678 1.2507 14 6 1.4811 -4.9870 0.0018 15 1 0.8548 -5.0454 -0.8884 16 6 2.4753 -6.1499 0.0024 17 1 3.1684 -6.0360 -0.8312 18 9 3.1894 -6.1524 1.2055 19 6 1.7160 -7.4702 -0.1426 20 9 0.8965 -7.4149 -1.2751 21 9 2.6295 -8.5211 -0.2787 22 9 0.9276 -7.6819 0.9935 23 6 2.2452 -3.6621 0.0005 24 1 -0.4849 0.8401 -0.0004 25 1 0.9973 -2.5220 2.1397 26 1 -0.3374 -1.7514 1.2490 27 1 -1.0209 -3.9626 2.1393 28 1 -1.0199 -3.9635 0.3596 29 1 0.0563 -6.0119 1.2506 30 1 1.2274 -5.0094 2.1409 31 1 2.8719 -3.6044 0.8906 32 1 2.8719 -3.6043 -0.8895 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261115996.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:26 Heat of formation + Delta-G solvation = -244.260482 kcal Electronic energy + Delta-G solvation = -20057.313046 eV Core-core repulsion = 16322.519348 eV Total energy + Delta-G solvation = -3734.793697 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -51.37320 -49.20591 -48.77727 -48.50088 -39.38483 -35.16417 -33.13103 -31.65417 -29.22575 -26.80979 -24.66664 -23.00932 -22.17241 -20.52122 -19.76537 -19.52288 -19.04048 -18.28965 -17.05247 -16.74859 -16.23189 -15.93758 -15.54076 -15.40118 -15.25741 -15.07754 -14.87791 -14.84848 -14.70721 -14.52587 -14.17600 -13.57866 -13.42762 -12.85496 -12.63637 -12.53577 -12.35252 -12.00601 -11.91707 -11.70023 -11.64432 -11.20476 -10.71465 -10.53077 -10.30997 -8.05841 -6.19357 1.41470 1.42061 1.43798 1.52717 2.43967 2.47061 2.73863 2.84377 3.21133 3.37835 3.64620 3.68675 4.07810 4.21820 4.41287 4.57836 4.72502 4.76032 4.84918 4.95706 5.09300 5.14600 5.33729 5.38566 5.48949 5.64985 5.71917 6.05335 6.21296 6.43094 6.93520 7.48685 8.97916 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.041227 B = 0.005760 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.002551 B = 4859.623911 C = 5093.258481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.949 3.051 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.052 0.948 9 C 0.048 3.952 10 H 0.000 1.000 11 C -0.107 4.107 12 C -0.109 4.109 13 C -0.122 4.122 14 C -0.113 4.113 15 H 0.103 0.897 16 C 0.065 3.935 17 H 0.156 0.844 18 F -0.186 7.186 19 C 0.437 3.563 20 F -0.170 7.170 21 F -0.178 7.178 22 F -0.175 7.175 23 C -0.090 4.090 24 H 0.259 0.741 25 H 0.024 0.976 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.930 -14.123 -0.490 14.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.775 3.225 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.572 4.572 8 H 0.071 0.929 9 C 0.029 3.971 10 H 0.019 0.981 11 C -0.145 4.145 12 C -0.147 4.147 13 C -0.159 4.159 14 C -0.131 4.131 15 H 0.121 0.879 16 C 0.028 3.972 17 H 0.174 0.826 18 F -0.166 7.166 19 C 0.382 3.618 20 F -0.151 7.151 21 F -0.159 7.159 22 F -0.156 7.156 23 C -0.128 4.128 24 H 0.068 0.932 25 H 0.042 0.958 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.788 -14.039 -0.455 14.320 hybrid contribution 0.143 0.957 0.104 0.974 sum 2.932 -13.082 -0.351 13.411 Atomic orbital electron populations 1.70016 1.07089 1.26948 1.51543 1.25701 0.95618 1.02217 0.95025 0.85694 0.78785 0.79827 0.78178 1.20151 1.21166 1.19423 1.21620 0.93091 0.92299 1.50194 0.92949 1.18586 0.92971 0.91877 0.93655 0.98148 1.21472 0.98877 0.96392 0.97771 1.21484 0.97490 0.94854 1.00874 1.21836 0.97716 0.99393 0.96944 1.21855 0.96331 0.93335 1.01598 0.87924 1.23015 0.95342 0.91097 0.87745 0.82631 1.92888 1.79196 1.96863 1.47670 1.21105 0.78736 0.87711 0.74232 1.93215 1.73764 1.96525 1.51620 1.93214 1.66434 1.60752 1.95540 1.93139 1.75533 1.95448 1.51480 1.21465 0.97855 0.92377 1.01090 0.93169 0.95754 0.92462 0.92209 0.93014 0.89787 0.91975 0.93050 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.40 11.32 21.45 0.24 -52.16 16 2 C 0.01 0.70 5.30 84.66 0.45 1.15 16 3 Si 0.95 43.19 29.54 68.60 2.03 45.22 16 4 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 7 C -0.53 -28.76 8.56 25.60 0.22 -28.54 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 9 C 0.05 2.27 2.10 -11.54 -0.02 2.25 16 10 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 11 C -0.11 -4.96 4.98 30.59 0.15 -4.81 16 12 C -0.11 -4.03 5.92 30.59 0.18 -3.85 16 13 C -0.12 -3.83 4.51 30.59 0.14 -3.69 16 14 C -0.11 -3.38 1.95 -10.81 -0.02 -3.40 16 15 H 0.10 2.98 7.48 -2.39 -0.02 2.96 16 16 C 0.07 1.58 3.07 30.59 0.09 1.67 16 17 H 0.16 2.86 8.14 -2.38 -0.02 2.84 16 18 F -0.19 -5.16 15.96 44.97 0.72 -4.44 16 19 C 0.44 10.20 2.89 71.98 0.21 10.41 16 20 F -0.17 -3.96 16.46 44.97 0.74 -3.22 16 21 F -0.18 -4.07 17.32 44.97 0.78 -3.29 16 22 F -0.17 -4.43 14.14 44.97 0.64 -3.80 16 23 C -0.09 -3.39 4.35 30.57 0.13 -3.25 16 24 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 25 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 26 H 0.06 3.05 6.07 -2.38 -0.01 3.03 16 27 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.08 2.35 5.49 -2.39 -0.01 2.34 16 30 H 0.06 2.02 7.67 -2.39 -0.02 2.00 16 31 H 0.05 1.99 7.96 -2.39 -0.02 1.97 16 32 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -58.04 269.25 7.80 -50.24 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: 1.13 Total: 3.50 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 1.53 Total: -32.07 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.24 Total: -52.16 kcal Atomic # 9 Polarization: -17.61 SS G_CDS: 2.87 Total: -14.74 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -58.04 7.80 -50.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115996.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.018 kcal (2) G-P(sol) polarization free energy of solvation -58.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds