Wall clock time and date at job start Mon Mar 30 2020 06:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99930 * 2 1 4 4 H 1.48495 * 109.47224 * 90.00368 * 3 2 1 5 5 H 1.48500 * 109.47241 * 210.00382 * 3 2 1 6 6 H 1.48498 * 109.47435 * 330.00176 * 3 2 1 7 7 C 1.37877 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00215 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00044 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47247 * 60.00400 * 9 7 2 11 11 C 1.53004 * 109.46981 * 299.99825 * 9 7 2 12 12 C 1.52995 * 109.47401 * 299.99951 * 11 9 7 13 13 C 1.53002 * 109.47317 * 300.00152 * 12 11 9 14 14 C 1.53004 * 109.47009 * 59.99608 * 13 12 11 15 15 H 1.09001 * 109.47222 * 60.00452 * 14 13 12 16 16 C 1.53002 * 109.47009 * 179.97438 * 14 13 12 17 17 H 1.08998 * 109.46910 * 174.05688 * 16 14 13 18 18 F 1.39897 * 109.46950 * 54.05567 * 16 14 13 19 19 C 1.53000 * 109.47342 * 294.05588 * 16 14 13 20 20 F 1.39901 * 109.46957 * 65.91549 * 19 16 14 21 21 F 1.39894 * 109.47240 * 185.91705 * 19 16 14 22 22 F 1.39897 * 109.47143 * 305.91838 * 19 16 14 23 23 C 1.52995 * 109.47401 * 300.00341 * 14 13 12 24 24 H 0.96993 * 119.99955 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.46872 * 60.00668 * 11 9 7 26 26 H 1.09006 * 109.46538 * 179.97438 * 11 9 7 27 27 H 1.08991 * 109.47466 * 180.02562 * 12 11 9 28 28 H 1.09001 * 109.47023 * 59.99767 * 12 11 9 29 29 H 1.09001 * 109.46760 * 299.99777 * 13 12 11 30 30 H 1.09001 * 109.47389 * 180.02562 * 13 12 11 31 31 H 1.09006 * 109.46793 * 299.99808 * 23 14 13 32 32 H 1.08993 * 109.47277 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 1.4000 5 1 3.5466 1.4402 -0.7001 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6241 -2.5568 -0.8903 11 6 0.3719 -2.5805 1.2491 12 6 1.2520 -2.4997 2.4980 13 6 2.2463 -3.6626 2.4974 14 6 3.1254 -3.5813 1.2477 15 1 3.6704 -2.6373 1.2477 16 6 4.1201 -4.7438 1.2474 17 1 4.6743 -4.7476 0.3088 18 9 3.4265 -5.9510 1.3844 19 6 5.0955 -4.5808 2.4149 20 9 4.4025 -4.7108 3.6232 21 9 6.0854 -5.5663 2.3366 22 9 5.6905 -3.3162 2.3523 23 6 2.2454 -3.6621 -0.0011 24 1 -0.4850 0.8400 0.0004 25 1 -0.3364 -1.7521 1.2495 26 1 -0.1734 -3.5243 1.2488 27 1 0.6258 -2.5581 3.3881 28 1 1.7970 -1.5558 2.4979 29 1 1.7013 -4.6066 2.4974 30 1 2.8730 -3.6054 3.3873 31 1 1.7004 -4.6061 -0.0011 32 1 2.8717 -3.6046 -0.8913 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261115997.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:29 Heat of formation + Delta-G solvation = -240.436644 kcal Electronic energy + Delta-G solvation = -20434.149651 eV Core-core repulsion = 16699.521767 eV Total energy + Delta-G solvation = -3734.627883 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -51.35792 -49.18443 -48.76442 -48.48359 -39.49585 -34.91321 -32.99660 -31.54729 -29.14737 -26.89843 -24.65821 -23.12382 -22.14879 -20.55695 -19.75194 -19.51425 -18.99027 -17.68487 -17.03399 -16.81535 -16.37627 -15.90529 -15.52963 -15.42918 -15.24841 -15.05914 -14.85108 -14.74145 -14.66599 -14.62642 -13.98674 -13.36492 -13.29368 -12.90536 -12.68772 -12.40631 -12.31330 -12.21115 -11.91555 -11.79441 -11.40969 -10.88492 -10.74675 -10.48355 -10.21592 -8.00560 -6.10789 1.43252 1.45163 1.46358 1.53372 2.48029 2.48597 2.77289 2.86355 3.28242 3.43296 3.67657 3.76902 4.12426 4.28639 4.50403 4.69532 4.81907 4.86759 4.94912 4.99288 5.11604 5.18089 5.39148 5.40379 5.69017 5.73832 5.76955 5.98541 6.23865 6.46557 6.99867 7.55670 9.04257 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.028710 B = 0.007629 C = 0.006879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.042734 B = 3669.234923 C = 4069.173625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.014 3.986 3 Si 0.939 3.061 4 H -0.280 1.280 5 H -0.266 1.266 6 H -0.292 1.292 7 C -0.506 4.506 8 H 0.060 0.940 9 C 0.041 3.959 10 H -0.006 1.006 11 C -0.108 4.108 12 C -0.095 4.095 13 C -0.118 4.118 14 C -0.104 4.104 15 H 0.099 0.901 16 C 0.065 3.935 17 H 0.155 0.845 18 F -0.184 7.184 19 C 0.435 3.565 20 F -0.175 7.175 21 F -0.178 7.178 22 F -0.172 7.172 23 C -0.090 4.090 24 H 0.256 0.744 25 H 0.056 0.944 26 H 0.024 0.976 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.211 -9.112 4.066 13.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.184 4.184 3 Si 0.766 3.234 4 H -0.206 1.206 5 H -0.190 1.190 6 H -0.218 1.218 7 C -0.544 4.544 8 H 0.078 0.922 9 C 0.022 3.978 10 H 0.012 0.988 11 C -0.146 4.146 12 C -0.132 4.132 13 C -0.155 4.155 14 C -0.123 4.123 15 H 0.117 0.883 16 C 0.027 3.973 17 H 0.172 0.828 18 F -0.165 7.165 19 C 0.380 3.620 20 F -0.157 7.157 21 F -0.160 7.160 22 F -0.154 7.154 23 C -0.128 4.128 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.078 -9.023 4.092 13.438 hybrid contribution 0.126 1.110 0.136 1.125 sum 9.204 -7.914 4.228 12.853 Atomic orbital electron populations 1.70014 1.07135 1.26606 1.52207 1.25611 0.95385 1.01835 0.95565 0.85849 0.79047 0.80575 0.77979 1.20585 1.19027 1.21781 1.21438 0.92967 0.91251 1.48790 0.92168 1.18646 0.93062 0.92795 0.93264 0.98780 1.21425 0.98583 0.98495 0.96065 1.21231 0.97160 0.97965 0.96865 1.21780 0.97983 0.98990 0.96754 1.21731 0.96069 0.96294 0.98177 0.88285 1.23051 0.92907 0.83726 0.97583 0.82767 1.92876 1.80668 1.46092 1.96840 1.21174 0.81481 0.74166 0.85176 1.93135 1.78499 1.95378 1.48638 1.93206 1.64056 1.62317 1.96373 1.93217 1.84878 1.40877 1.96401 1.21431 0.97524 0.98394 0.95408 0.93471 0.92535 0.95694 0.93395 0.93347 0.91794 0.90600 0.92766 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.84 11.32 21.45 0.24 -51.60 16 2 C 0.01 0.74 5.30 84.65 0.45 1.19 16 3 Si 0.94 42.25 29.54 68.60 2.03 44.28 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 6 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 7 C -0.51 -25.55 6.61 25.60 0.17 -25.38 16 8 H 0.06 2.92 6.71 -2.91 -0.02 2.90 16 9 C 0.04 1.91 2.59 -11.54 -0.03 1.88 16 10 H -0.01 -0.32 8.14 -2.39 -0.02 -0.33 16 11 C -0.11 -4.92 5.24 30.59 0.16 -4.76 16 12 C -0.09 -3.80 5.70 30.59 0.17 -3.63 16 13 C -0.12 -3.97 4.51 30.60 0.14 -3.83 16 14 C -0.10 -3.37 1.72 -10.79 -0.02 -3.39 16 15 H 0.10 3.47 5.95 -2.39 -0.01 3.45 16 16 C 0.06 1.66 3.07 30.60 0.09 1.75 16 17 H 0.15 3.05 8.14 -2.39 -0.02 3.03 16 18 F -0.18 -5.08 15.96 44.97 0.72 -4.37 16 19 C 0.43 11.14 2.89 71.98 0.21 11.35 16 20 F -0.18 -4.83 14.14 44.97 0.64 -4.20 16 21 F -0.18 -4.34 17.32 44.97 0.78 -3.56 16 22 F -0.17 -4.64 16.46 44.97 0.74 -3.90 16 23 C -0.09 -3.29 4.62 30.59 0.14 -3.15 16 24 H 0.26 13.97 8.31 -92.71 -0.77 13.19 16 25 H 0.06 2.98 6.07 -2.39 -0.01 2.96 16 26 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.05 2.15 7.22 -2.39 -0.02 2.13 16 29 H 0.06 2.09 7.67 -2.39 -0.02 2.07 16 30 H 0.08 2.37 5.49 -2.39 -0.01 2.36 16 31 H 0.05 1.87 7.96 -2.38 -0.02 1.85 16 32 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -55.62 264.39 7.76 -47.86 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: 1.14 Total: 3.46 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: 1.49 Total: -27.97 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 0.24 Total: -51.60 kcal Atomic # 9 Polarization: -18.90 SS G_CDS: 2.87 Total: -16.02 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -55.62 7.76 -47.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115997.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.580 kcal (2) G-P(sol) polarization free energy of solvation -55.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds