Wall clock time and date at job start Mon Mar 30 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47207 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.42998 * 56.08955 * 10 9 7 12 12 C 1.54266 * 110.48549 * 293.54732 * 10 9 7 13 13 C 1.53874 * 106.59449 * 217.71066 * 12 10 9 14 14 C 1.54260 * 106.60173 * 0.02562 * 13 12 10 15 15 H 1.09004 * 110.48518 * 264.93452 * 14 13 12 16 16 C 1.53002 * 110.48962 * 142.42039 * 14 13 12 17 17 H 1.08996 * 109.46984 * 186.45229 * 16 14 13 18 18 F 1.39897 * 109.46994 * 306.45606 * 16 14 13 19 19 C 1.53002 * 109.47084 * 66.45273 * 16 14 13 20 20 F 1.39903 * 109.47185 * 60.00104 * 19 16 14 21 21 F 1.39898 * 109.47165 * 180.02562 * 19 16 14 22 22 F 1.39901 * 109.47054 * 300.00384 * 19 16 14 23 23 C 1.54888 * 110.48413 * 178.77173 * 10 9 7 24 24 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 26 26 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 27 27 H 1.09000 * 110.02975 * 336.99306 * 12 10 9 28 28 H 1.08996 * 110.03138 * 98.42700 * 12 10 9 29 29 H 1.08998 * 110.02999 * 119.28498 * 13 12 10 30 30 H 1.09003 * 110.03205 * 240.66338 * 13 12 10 31 31 H 1.09009 * 110.75507 * 274.93140 * 23 10 9 32 32 H 1.08993 * 110.75904 * 38.30691 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9258 -3.5809 0.8472 12 6 3.0350 -3.6972 -1.3253 13 6 3.2177 -5.1812 -1.6888 14 6 2.5322 -5.9960 -0.5726 15 1 3.2588 -6.2943 0.1832 16 6 1.8351 -7.2257 -1.1582 17 1 1.2623 -7.7251 -0.3768 18 9 0.9735 -6.8279 -2.1861 19 6 2.8843 -8.1892 -1.7164 20 9 3.7460 -8.5869 -0.6885 21 9 2.2469 -9.3133 -2.2524 22 9 3.6195 -7.5481 -2.7193 23 6 1.4951 -5.0167 0.0306 24 1 -0.4850 -0.8401 0.0004 25 1 0.6247 -2.5570 0.8897 26 1 0.6242 -2.5567 -0.8903 27 1 2.4736 -3.1874 -2.1082 28 1 4.0074 -3.2228 -1.1931 29 1 2.7450 -5.3915 -2.6481 30 1 4.2788 -5.4267 -1.7339 31 1 1.2478 -5.2979 1.0543 32 1 0.5981 -4.9758 -0.5873 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261132798.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:11 Heat of formation + Delta-G solvation = -236.795517 kcal Electronic energy + Delta-G solvation = -19604.357152 eV Core-core repulsion = 15869.887160 eV Total energy + Delta-G solvation = -3734.469992 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.47792 -48.34123 -47.87028 -47.62011 -38.12270 -33.69386 -31.76701 -29.25265 -27.93625 -25.32033 -23.12251 -22.43730 -20.15453 -19.44776 -18.89866 -18.57723 -17.93502 -16.72426 -16.47279 -15.52168 -15.08913 -14.69498 -14.58502 -14.27843 -14.25597 -14.02009 -13.98416 -13.74860 -13.29754 -13.11342 -12.86356 -12.24261 -11.86099 -11.63790 -11.03971 -10.84014 -10.71725 -10.67586 -10.48097 -10.20134 -10.07684 -9.78733 -9.45476 -8.47386 -8.29685 -6.33115 -4.01789 2.26875 3.31651 3.44945 3.48803 3.59352 3.61862 3.68679 4.18872 4.43375 4.56432 4.60261 4.92864 5.12544 5.32483 5.43989 5.75312 5.81532 5.88195 5.98797 6.10319 6.19603 6.41714 6.54228 6.80164 6.85329 7.05376 7.39725 7.57022 8.25204 8.50489 8.92149 9.70190 11.07538 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.049977 B = 0.004709 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.125955 B = 5944.211601 C = 6110.657764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 1.072 2.928 4 H -0.290 1.290 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.596 4.596 8 H 0.049 0.951 9 C 0.015 3.985 10 C -0.073 4.073 11 H 0.063 0.937 12 C -0.104 4.104 13 C -0.125 4.125 14 C -0.126 4.126 15 H 0.101 0.899 16 C 0.065 3.935 17 H 0.127 0.873 18 F -0.174 7.174 19 C 0.430 3.570 20 F -0.174 7.174 21 F -0.180 7.180 22 F -0.169 7.169 23 C -0.114 4.114 24 H 0.269 0.731 25 H 0.006 0.994 26 H 0.009 0.991 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.471 -16.937 -1.957 17.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.190 4.190 3 Si 0.901 3.099 4 H -0.216 1.216 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.634 4.634 8 H 0.068 0.932 9 C -0.022 4.022 10 C -0.092 4.092 11 H 0.081 0.919 12 C -0.142 4.142 13 C -0.163 4.163 14 C -0.145 4.145 15 H 0.119 0.881 16 C 0.027 3.973 17 H 0.144 0.856 18 F -0.154 7.154 19 C 0.376 3.624 20 F -0.155 7.155 21 F -0.161 7.161 22 F -0.151 7.151 23 C -0.151 4.151 24 H 0.079 0.921 25 H 0.024 0.976 26 H 0.027 0.973 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.295 -15.305 -2.010 16.319 hybrid contribution 0.336 -1.930 -0.182 1.968 sum 5.631 -17.235 -2.192 18.263 Atomic orbital electron populations 1.70722 1.06924 1.30607 1.47065 1.25814 0.96562 1.02699 0.93958 0.83504 0.74470 0.75025 0.76912 1.21571 1.21434 1.21418 1.22084 0.94303 0.91880 1.55154 0.93233 1.19279 0.94143 0.92850 0.95906 1.21886 0.97295 0.93395 0.96594 0.91852 1.22039 1.00437 0.93165 0.98528 1.22389 0.99791 0.96660 0.97448 1.22781 0.99346 0.92837 0.99551 0.88101 1.22781 0.89165 0.96520 0.88788 0.85561 1.92928 1.70238 1.91744 1.60488 1.21189 0.83226 0.81223 0.76810 1.93201 1.71972 1.91489 1.58840 1.93213 1.81557 1.54456 1.86877 1.93232 1.78770 1.81045 1.62021 1.22672 0.97376 0.95102 0.99952 0.92085 0.97611 0.97299 0.91294 0.92272 0.91177 0.91810 0.91592 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.10 13.65 55.43 0.76 -27.34 16 2 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 3 Si 1.07 25.43 29.90 -169.99 -5.08 20.35 16 4 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.60 -16.65 8.67 -34.44 -0.30 -16.95 16 8 H 0.05 1.37 7.68 -52.49 -0.40 0.97 16 9 C 0.02 0.38 3.67 -27.88 -0.10 0.27 16 10 C -0.07 -1.43 2.84 -88.96 -0.25 -1.68 16 11 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 12 C -0.10 -1.90 5.87 -25.61 -0.15 -2.05 16 13 C -0.13 -1.84 4.70 -25.62 -0.12 -1.96 16 14 C -0.13 -1.64 2.66 -88.98 -0.24 -1.88 16 15 H 0.10 1.16 7.75 -51.93 -0.40 0.76 16 16 C 0.07 0.74 3.13 -26.73 -0.08 0.66 16 17 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 18 F -0.17 -2.38 15.49 2.25 0.03 -2.35 16 19 C 0.43 4.90 2.90 37.16 0.11 5.01 16 20 F -0.17 -1.90 16.76 2.25 0.04 -1.86 16 21 F -0.18 -2.09 17.30 2.25 0.04 -2.05 16 22 F -0.17 -2.15 14.59 2.25 0.03 -2.12 16 23 C -0.11 -1.77 5.72 -24.75 -0.14 -1.91 16 24 H 0.27 8.20 7.22 -40.82 -0.29 7.90 16 25 H 0.01 0.15 8.01 -51.93 -0.42 -0.27 16 26 H 0.01 0.23 7.92 -51.93 -0.41 -0.18 16 27 H 0.07 1.39 7.77 -51.93 -0.40 0.99 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.07 1.05 6.50 -51.93 -0.34 0.71 16 30 H 0.06 0.86 7.84 -51.93 -0.41 0.45 16 31 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 32 H 0.07 1.21 7.51 -51.93 -0.39 0.82 16 LS Contribution 275.42 15.07 4.15 4.15 Total: -1.00 -30.03 275.42 -5.36 -35.39 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: -3.95 Total: -3.95 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -1.38 Total: -20.22 kcal Atomic # 7 Polarization: -28.10 SS G_CDS: 0.76 Total: -27.34 kcal Atomic # 9 Polarization: -8.52 SS G_CDS: 0.14 Total: -8.38 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.08 Total: 20.35 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.03 -5.36 -35.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261132798.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.405 kcal (2) G-P(sol) polarization free energy of solvation -30.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds