Wall clock time and date at job start Mon Mar 30 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47207 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.42998 * 56.08955 * 10 9 7 12 12 C 1.54266 * 110.48549 * 293.54732 * 10 9 7 13 13 C 1.53874 * 106.59449 * 217.71066 * 12 10 9 14 14 C 1.54260 * 106.60173 * 0.02562 * 13 12 10 15 15 H 1.09004 * 110.48518 * 264.93452 * 14 13 12 16 16 C 1.53002 * 110.48962 * 142.42039 * 14 13 12 17 17 H 1.08996 * 109.46984 * 186.45229 * 16 14 13 18 18 F 1.39897 * 109.46994 * 306.45606 * 16 14 13 19 19 C 1.53002 * 109.47084 * 66.45273 * 16 14 13 20 20 F 1.39903 * 109.47185 * 60.00104 * 19 16 14 21 21 F 1.39898 * 109.47165 * 180.02562 * 19 16 14 22 22 F 1.39901 * 109.47054 * 300.00384 * 19 16 14 23 23 C 1.54888 * 110.48413 * 178.77173 * 10 9 7 24 24 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 26 26 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 27 27 H 1.09000 * 110.02975 * 336.99306 * 12 10 9 28 28 H 1.08996 * 110.03138 * 98.42700 * 12 10 9 29 29 H 1.08998 * 110.02999 * 119.28498 * 13 12 10 30 30 H 1.09003 * 110.03205 * 240.66338 * 13 12 10 31 31 H 1.09009 * 110.75507 * 274.93140 * 23 10 9 32 32 H 1.08993 * 110.75904 * 38.30691 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9258 -3.5809 0.8472 12 6 3.0350 -3.6972 -1.3253 13 6 3.2177 -5.1812 -1.6888 14 6 2.5322 -5.9960 -0.5726 15 1 3.2588 -6.2943 0.1832 16 6 1.8351 -7.2257 -1.1582 17 1 1.2623 -7.7251 -0.3768 18 9 0.9735 -6.8279 -2.1861 19 6 2.8843 -8.1892 -1.7164 20 9 3.7460 -8.5869 -0.6885 21 9 2.2469 -9.3133 -2.2524 22 9 3.6195 -7.5481 -2.7193 23 6 1.4951 -5.0167 0.0306 24 1 -0.4850 -0.8401 0.0004 25 1 0.6247 -2.5570 0.8897 26 1 0.6242 -2.5567 -0.8903 27 1 2.4736 -3.1874 -2.1082 28 1 4.0074 -3.2228 -1.1931 29 1 2.7450 -5.3915 -2.6481 30 1 4.2788 -5.4267 -1.7339 31 1 1.2478 -5.2979 1.0543 32 1 0.5981 -4.9758 -0.5873 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261132798.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:11 Heat of formation + Delta-G solvation = -252.756418 kcal Electronic energy + Delta-G solvation = -19605.049269 eV Core-core repulsion = 15869.887160 eV Total energy + Delta-G solvation = -3735.162109 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -51.37034 -49.27980 -48.77505 -48.53607 -39.49599 -35.64292 -33.23836 -30.74512 -29.24679 -26.99432 -24.59233 -23.97493 -21.30669 -20.90615 -19.80479 -19.51633 -19.02307 -18.68171 -17.56513 -16.66462 -16.32559 -15.67495 -15.58828 -15.51032 -15.27992 -15.18097 -15.12016 -14.93892 -14.87798 -14.49195 -14.32129 -13.79754 -13.41808 -13.06934 -12.74450 -12.48469 -11.98234 -11.93190 -11.91884 -11.78409 -11.62032 -11.41649 -11.20103 -10.54233 -10.51330 -8.64937 -6.34284 1.37409 1.52203 1.61641 1.77493 2.43206 2.57246 2.67763 2.80615 3.19130 3.22738 3.46785 3.60843 3.78720 4.00736 4.11414 4.44981 4.51407 4.52632 4.69864 4.72142 4.90350 4.97844 5.09027 5.21647 5.28544 5.36698 5.46531 5.68638 6.06217 6.23745 6.63259 7.47030 8.75881 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.049977 B = 0.004709 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.125955 B = 5944.211601 C = 6110.657764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.043 4.043 3 Si 1.119 2.881 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.605 4.605 8 H 0.051 0.949 9 C 0.017 3.983 10 C -0.074 4.074 11 H 0.065 0.935 12 C -0.103 4.103 13 C -0.119 4.119 14 C -0.116 4.116 15 H 0.127 0.873 16 C 0.065 3.935 17 H 0.164 0.836 18 F -0.189 7.189 19 C 0.436 3.564 20 F -0.168 7.168 21 F -0.180 7.180 22 F -0.179 7.179 23 C -0.107 4.107 24 H 0.255 0.745 25 H -0.014 1.014 26 H -0.016 1.016 27 H 0.038 0.962 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.871 -18.132 -1.442 19.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.240 4.240 3 Si 0.941 3.059 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.643 4.643 8 H 0.069 0.931 9 C -0.020 4.020 10 C -0.093 4.093 11 H 0.084 0.916 12 C -0.141 4.141 13 C -0.156 4.156 14 C -0.135 4.135 15 H 0.145 0.855 16 C 0.028 3.972 17 H 0.181 0.819 18 F -0.170 7.170 19 C 0.381 3.619 20 F -0.149 7.149 21 F -0.162 7.162 22 F -0.160 7.160 23 C -0.145 4.145 24 H 0.064 0.936 25 H 0.005 0.995 26 H 0.002 0.998 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.701 -16.528 -1.496 17.898 hybrid contribution -0.107 -1.573 -0.344 1.614 sum 6.594 -18.101 -1.840 19.352 Atomic orbital electron populations 1.70862 1.08022 1.29809 1.49470 1.27367 0.96627 1.06859 0.93107 0.82903 0.74347 0.71221 0.77392 1.19376 1.20483 1.20741 1.22500 0.94603 0.93254 1.53961 0.93109 1.19212 0.94670 0.94467 0.93655 1.21789 0.96563 0.93549 0.97395 0.91642 1.21964 0.99468 0.95780 0.96879 1.22310 1.01246 0.94102 0.97959 1.22699 0.98811 0.92691 0.99290 0.85473 1.22962 0.89223 0.95917 0.89134 0.81891 1.92903 1.70769 1.91910 1.61386 1.21093 0.83043 0.81111 0.76640 1.93218 1.71785 1.91426 1.58467 1.93215 1.81592 1.54449 1.86918 1.93218 1.79020 1.81239 1.62538 1.22546 0.97108 0.93423 1.01384 0.93591 0.99535 0.99795 0.94292 0.92475 0.91633 0.89950 0.89426 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.28 13.65 21.45 0.29 -58.99 16 2 C -0.04 -2.51 5.46 84.65 0.46 -2.04 16 3 Si 1.12 50.93 29.90 68.60 2.05 52.98 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.61 -34.37 8.67 25.60 0.22 -34.15 16 8 H 0.05 2.81 7.68 -2.91 -0.02 2.79 16 9 C 0.02 0.87 3.67 29.85 0.11 0.98 16 10 C -0.07 -2.89 2.84 -9.72 -0.03 -2.92 16 11 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 12 C -0.10 -3.74 5.87 31.32 0.18 -3.56 16 13 C -0.12 -3.27 4.70 31.32 0.15 -3.12 16 14 C -0.12 -2.67 2.66 -9.73 -0.03 -2.70 16 15 H 0.13 2.34 7.75 -2.38 -0.02 2.32 16 16 C 0.06 1.27 3.13 30.60 0.10 1.37 16 17 H 0.16 2.05 8.14 -2.39 -0.02 2.03 16 18 F -0.19 -4.86 15.49 44.97 0.70 -4.16 16 19 C 0.44 8.62 2.90 71.98 0.21 8.83 16 20 F -0.17 -3.07 16.76 44.97 0.75 -2.31 16 21 F -0.18 -3.73 17.30 44.97 0.78 -2.95 16 22 F -0.18 -4.11 14.59 44.97 0.66 -3.46 16 23 C -0.11 -3.16 5.72 31.88 0.18 -2.98 16 24 H 0.25 16.21 7.22 -92.71 -0.67 15.54 16 25 H -0.01 -0.75 8.01 -2.38 -0.02 -0.76 16 26 H -0.02 -0.91 7.92 -2.39 -0.02 -0.93 16 27 H 0.04 1.61 7.77 -2.39 -0.02 1.59 16 28 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.06 1.88 6.50 -2.39 -0.02 1.87 16 30 H 0.08 1.99 7.84 -2.39 -0.02 1.97 16 31 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.06 1.95 7.51 -2.39 -0.02 1.93 16 Total: -1.00 -65.94 275.42 8.01 -57.93 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: 1.22 Total: 1.25 kcal Atomic # 6 Polarization: -41.86 SS G_CDS: 1.56 Total: -40.30 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.29 Total: -58.99 kcal Atomic # 9 Polarization: -15.76 SS G_CDS: 2.88 Total: -12.88 kcal Atomic # 14 Polarization: 50.93 SS G_CDS: 2.05 Total: 52.98 kcal Total: -65.94 8.01 -57.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261132798.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.827 kcal (2) G-P(sol) polarization free energy of solvation -65.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -260.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds