Wall clock time and date at job start Mon Mar 30 2020 06:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47057 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.67097 * 54.29991 * 10 9 7 12 12 C 1.54891 * 110.75643 * 291.06909 * 10 9 7 13 13 C 1.54469 * 104.09779 * 203.89473 * 12 10 9 14 14 C 1.53876 * 106.68842 * 23.33736 * 13 12 10 15 15 H 1.09001 * 110.06973 * 240.85503 * 14 13 12 16 16 C 1.53003 * 110.02867 * 119.44366 * 14 13 12 17 17 H 1.08997 * 109.46807 * 62.83742 * 16 14 13 18 18 F 1.39897 * 109.47306 * 302.83349 * 16 14 13 19 19 C 1.53001 * 109.46767 * 182.83219 * 16 14 13 20 20 F 1.39906 * 109.47061 * 60.00233 * 19 16 14 21 21 F 1.39898 * 109.47160 * 180.02562 * 19 16 14 22 22 F 1.39897 * 109.47314 * 300.00125 * 19 16 14 23 23 C 1.54264 * 106.59572 * 0.15987 * 14 13 12 24 24 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 26 26 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 27 27 H 1.09005 * 110.48406 * 322.41568 * 12 10 9 28 28 H 1.08996 * 110.49161 * 85.06058 * 12 10 9 29 29 H 1.09005 * 109.85621 * 264.09643 * 13 12 10 30 30 H 1.08998 * 110.12513 * 142.72831 * 13 12 10 31 31 H 1.08999 * 110.48428 * 217.70767 * 23 14 13 32 32 H 1.09007 * 110.48387 * 95.07106 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 1 2.9483 -3.5674 0.8290 12 6 2.9968 -3.7415 -1.3507 13 6 3.4487 -5.2157 -1.4438 14 6 2.5009 -6.0263 -0.5426 15 1 3.0663 -6.5160 0.2502 16 6 1.7524 -7.0701 -1.3739 17 1 2.4661 -7.7762 -1.7985 18 9 1.0566 -6.4324 -2.4066 19 6 0.7632 -7.8204 -0.4798 20 9 -0.1527 -6.9142 0.0653 21 9 0.0793 -8.7753 -1.2397 22 9 1.4590 -8.4581 0.5529 23 6 1.5023 -5.0195 0.0650 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6248 -2.5563 0.8920 26 1 0.6242 -2.5575 -0.8880 27 1 2.3264 -3.4968 -2.1746 28 1 3.8587 -3.0744 -1.3480 29 1 4.4748 -5.3115 -1.0885 30 1 3.3756 -5.5660 -2.4734 31 1 1.2763 -5.2828 1.0983 32 1 0.5889 -4.9827 -0.5288 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261132809.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:17 Heat of formation + Delta-G solvation = -234.084433 kcal Electronic energy + Delta-G solvation = -19806.057184 eV Core-core repulsion = 16071.704753 eV Total energy + Delta-G solvation = -3734.352431 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.41644 -48.29319 -47.80543 -47.55166 -38.09902 -33.66370 -31.71845 -29.40423 -27.60308 -25.52454 -23.13343 -22.31524 -19.96189 -19.59260 -18.82032 -18.37149 -18.17686 -16.71360 -16.27086 -15.54821 -15.09896 -14.63589 -14.51142 -14.20365 -14.15541 -13.94360 -13.86465 -13.72295 -13.33106 -13.11438 -12.82532 -12.06946 -11.97414 -11.59638 -11.00293 -10.88173 -10.73723 -10.65766 -10.35961 -10.21489 -10.05598 -9.74987 -9.45717 -8.44320 -8.27111 -6.30301 -3.98789 2.32747 3.38500 3.45600 3.49295 3.62757 3.64812 3.74448 4.18543 4.46140 4.58083 4.62862 4.90946 5.13911 5.30817 5.46628 5.72627 5.83996 5.86520 5.98724 6.07746 6.27577 6.40515 6.55232 6.80055 6.89696 7.03478 7.44873 7.61537 8.28213 8.52632 8.94733 9.73270 11.10292 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.040267 B = 0.005263 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.196602 B = 5319.330071 C = 5545.398235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 1.070 2.930 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.596 4.596 8 H 0.048 0.952 9 C 0.016 3.984 10 C -0.073 4.073 11 H 0.063 0.937 12 C -0.104 4.104 13 C -0.116 4.116 14 C -0.124 4.124 15 H 0.098 0.902 16 C 0.065 3.935 17 H 0.124 0.876 18 F -0.173 7.173 19 C 0.430 3.570 20 F -0.165 7.165 21 F -0.180 7.180 22 F -0.175 7.175 23 C -0.126 4.126 24 H 0.269 0.731 25 H 0.006 0.994 26 H 0.008 0.992 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.274 -16.906 -2.251 17.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.191 4.191 3 Si 0.899 3.101 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.634 4.634 8 H 0.067 0.933 9 C -0.021 4.021 10 C -0.091 4.091 11 H 0.082 0.918 12 C -0.142 4.142 13 C -0.153 4.153 14 C -0.143 4.143 15 H 0.116 0.884 16 C 0.027 3.973 17 H 0.142 0.858 18 F -0.153 7.153 19 C 0.375 3.625 20 F -0.146 7.146 21 F -0.162 7.162 22 F -0.156 7.156 23 C -0.164 4.164 24 H 0.079 0.921 25 H 0.024 0.976 26 H 0.027 0.973 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.040 -15.266 -2.254 16.233 hybrid contribution -0.061 -1.907 0.080 1.910 sum 4.979 -17.173 -2.175 18.012 Atomic orbital electron populations 1.70744 1.06916 1.30633 1.46959 1.25822 0.96580 1.02685 0.94019 0.83534 0.74651 0.75287 0.76664 1.21547 1.21569 1.21089 1.22053 0.94198 0.91929 1.55215 0.93333 1.19219 0.94166 0.92770 0.95936 1.22033 0.97427 0.93417 0.96250 0.91824 1.22298 1.00205 0.92940 0.98741 1.22213 0.97850 0.96977 0.98305 1.22570 0.98049 0.95632 0.98063 0.88410 1.22834 0.91309 0.96483 0.86680 0.85837 1.92946 1.80431 1.83301 1.58615 1.21160 0.82262 0.78418 0.80657 1.93268 1.68538 1.66174 1.86616 1.93209 1.81519 1.65924 1.75524 1.93193 1.78844 1.82883 1.60688 1.22802 0.97969 0.95292 1.00301 0.92065 0.97591 0.97330 0.91635 0.91564 0.91413 0.91797 0.91683 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.49 13.65 55.43 0.76 -27.73 16 2 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 3 Si 1.07 25.55 29.90 -169.99 -5.08 20.47 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.60 -16.86 8.74 -34.44 -0.30 -17.16 16 8 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 9 C 0.02 0.41 3.79 -27.89 -0.11 0.30 16 10 C -0.07 -1.46 2.84 -88.63 -0.25 -1.71 16 11 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 12 C -0.10 -1.87 5.93 -24.96 -0.15 -2.02 16 13 C -0.12 -1.55 6.25 -25.50 -0.16 -1.71 16 14 C -0.12 -1.61 2.73 -89.50 -0.24 -1.85 16 15 H 0.10 1.08 7.87 -51.93 -0.41 0.67 16 16 C 0.06 0.75 2.94 -26.73 -0.08 0.67 16 17 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 18 F -0.17 -2.46 15.79 2.25 0.04 -2.43 16 19 C 0.43 5.29 2.88 37.16 0.11 5.39 16 20 F -0.16 -2.41 14.06 2.25 0.03 -2.38 16 21 F -0.18 -2.23 17.30 2.25 0.04 -2.19 16 22 F -0.17 -2.02 16.84 2.25 0.04 -1.98 16 23 C -0.13 -2.12 4.03 -25.08 -0.10 -2.22 16 24 H 0.27 8.36 7.22 -40.82 -0.29 8.07 16 25 H 0.01 0.16 8.01 -51.93 -0.42 -0.26 16 26 H 0.01 0.23 7.91 -51.93 -0.41 -0.18 16 27 H 0.06 1.27 7.98 -51.93 -0.41 0.86 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.78 7.41 -51.93 -0.38 0.39 16 31 H 0.06 1.06 7.88 -51.93 -0.41 0.65 16 32 H 0.08 1.39 6.20 -51.92 -0.32 1.07 16 LS Contribution 275.23 15.07 4.15 4.15 Total: -1.00 -30.76 275.23 -5.37 -36.13 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: -3.95 Total: -3.99 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -1.38 Total: -20.05 kcal Atomic # 7 Polarization: -28.49 SS G_CDS: 0.76 Total: -27.73 kcal Atomic # 9 Polarization: -9.13 SS G_CDS: 0.14 Total: -8.98 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -5.08 Total: 20.47 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.76 -5.37 -36.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261132809.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.955 kcal (2) G-P(sol) polarization free energy of solvation -30.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds