Wall clock time and date at job start Mon Mar 30 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00184 * 2 1 4 4 H 1.48500 * 109.47237 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47380 * 300.00419 * 3 2 1 6 6 H 1.48500 * 109.46969 * 60.00374 * 3 2 1 7 7 C 1.37876 * 119.99628 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00050 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46712 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47180 * 57.36704 * 10 9 7 12 12 C 1.52994 * 109.47626 * 297.36260 * 10 9 7 13 13 C 1.52991 * 109.47315 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47232 * 60.00424 * 13 12 10 15 15 C 1.53005 * 109.46977 * 299.99918 * 14 13 12 16 16 C 1.52996 * 109.46988 * 59.99653 * 15 14 13 17 17 F 1.39901 * 109.47057 * 60.00206 * 16 15 14 18 18 C 1.53005 * 109.46988 * 180.02562 * 16 15 14 19 19 F 1.39900 * 109.46839 * 187.24963 * 18 16 15 20 20 F 1.39894 * 109.47268 * 307.24707 * 18 16 15 21 21 F 1.39903 * 109.46955 * 67.25219 * 18 16 15 22 22 H 0.97004 * 119.99806 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.46992 * 60.00930 * 9 7 2 24 24 H 1.08994 * 109.47475 * 300.00315 * 9 7 2 25 25 H 1.09000 * 109.47204 * 300.00430 * 12 10 9 26 26 H 1.09000 * 109.46865 * 59.99971 * 12 10 9 27 27 H 1.09007 * 109.47454 * 180.02562 * 13 12 10 28 28 H 1.08995 * 109.47420 * 299.99835 * 13 12 10 29 29 H 1.09000 * 109.47156 * 59.99816 * 14 13 12 30 30 H 1.08998 * 109.47105 * 180.02562 * 14 13 12 31 31 H 1.09000 * 109.47218 * 180.02562 * 15 14 13 32 32 H 1.09004 * 109.46992 * 300.00433 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 1 2.9025 -3.5781 0.8649 12 6 3.0805 -3.6190 -1.2816 13 6 4.0742 -4.7822 -1.2818 14 6 3.3099 -6.1060 -1.2158 15 6 2.4745 -6.1492 0.0653 16 6 1.4808 -4.9859 0.0655 17 9 0.6370 -5.0931 -1.0453 18 6 0.6457 -5.0287 1.3469 19 9 -0.3701 -4.0696 1.2738 20 9 0.0780 -6.2991 1.4914 21 9 1.4658 -4.7564 2.4472 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6245 -2.5571 0.8896 25 1 2.4232 -3.7030 -2.1470 26 1 3.6247 -2.6757 -1.3288 27 1 4.6698 -4.7513 -2.1943 28 1 4.7316 -4.6987 -0.4164 29 1 2.6526 -6.1895 -2.0812 30 1 4.0179 -6.9347 -1.2155 31 1 1.9303 -7.0925 0.1126 32 1 3.1319 -6.0656 0.9308 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261143727.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:14 Heat of formation + Delta-G solvation = -241.937319 kcal Electronic energy + Delta-G solvation = -20742.480769 eV Core-core repulsion = 17007.787811 eV Total energy + Delta-G solvation = -3734.692958 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -51.39793 -49.20720 -48.79297 -48.51762 -39.10583 -35.37863 -33.16921 -32.39273 -28.94378 -26.75273 -25.21407 -23.14637 -22.20865 -20.85339 -19.52448 -19.39272 -19.20686 -18.47671 -16.85189 -16.66381 -16.37771 -15.67751 -15.58764 -15.37414 -15.26305 -15.12906 -15.04750 -14.86447 -14.50269 -14.39905 -14.01944 -13.82521 -13.47404 -12.99813 -12.92248 -12.62062 -12.40253 -12.31123 -11.96782 -11.74644 -11.50972 -11.39636 -10.88305 -10.78550 -10.49188 -8.16108 -6.25971 1.40496 1.40816 1.44925 1.53484 2.41013 2.47809 2.79193 2.82216 3.17731 3.30753 3.56187 3.65923 4.12007 4.15072 4.20922 4.37396 4.46384 4.62317 4.81293 4.94079 4.98516 5.15008 5.20414 5.33895 5.43063 5.47349 5.56501 5.69539 5.85063 6.23351 6.89894 7.41691 8.96157 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.024339 B = 0.008829 C = 0.007318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.128206 B = 3170.548104 C = 3825.042928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.962 3.038 4 H -0.256 1.256 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.069 0.931 9 C 0.010 3.990 10 C -0.097 4.097 11 H 0.093 0.907 12 C -0.100 4.100 13 C -0.119 4.119 14 C -0.110 4.110 15 C -0.137 4.137 16 C 0.090 3.910 17 F -0.189 7.189 18 C 0.430 3.570 19 F -0.182 7.182 20 F -0.176 7.176 21 F -0.170 7.170 22 H 0.260 0.740 23 H -0.013 1.013 24 H 0.015 0.985 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.894 -13.507 0.027 15.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.787 3.213 4 H -0.180 1.180 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.087 0.913 9 C -0.027 4.027 10 C -0.116 4.116 11 H 0.111 0.889 12 C -0.137 4.137 13 C -0.156 4.156 14 C -0.147 4.147 15 C -0.175 4.175 16 C 0.070 3.930 17 F -0.169 7.169 18 C 0.376 3.624 19 F -0.163 7.163 20 F -0.157 7.157 21 F -0.151 7.151 22 H 0.069 0.931 23 H 0.006 0.994 24 H 0.033 0.967 25 H 0.065 0.935 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.125 0.875 31 H 0.116 0.884 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.712 -13.411 0.025 15.470 hybrid contribution -0.790 1.285 0.244 1.528 sum 6.922 -12.126 0.269 13.965 Atomic orbital electron populations 1.70148 1.07914 1.27397 1.52009 1.25967 0.95642 1.03307 0.95146 0.85443 0.79403 0.79055 0.77425 1.17979 1.20818 1.20860 1.21595 0.93548 0.91474 1.49748 0.91314 1.19421 0.94138 0.92835 0.96257 1.21777 0.97737 0.90362 1.01706 0.88877 1.21422 0.97396 0.99994 0.94921 1.21655 0.97343 0.93078 1.03527 1.21509 0.98829 0.98896 0.95483 1.22304 0.97165 0.94956 1.03064 1.22415 0.88533 1.03275 0.78788 1.92877 1.73083 1.97415 1.53520 1.21315 0.79719 0.73504 0.87904 1.93201 1.62678 1.63945 1.96480 1.93161 1.86109 1.40048 1.96428 1.93166 1.71993 1.93632 1.56353 0.93077 0.99420 0.96697 0.93475 0.91340 0.89836 0.90492 0.91964 0.87547 0.88411 0.87353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.02 13.29 21.45 0.28 -57.74 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 3 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 4 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 7 C -0.53 -29.23 8.39 25.60 0.21 -29.02 16 8 H 0.07 3.58 6.89 -2.91 -0.02 3.56 16 9 C 0.01 0.55 3.68 29.85 0.11 0.66 16 10 C -0.10 -3.81 1.36 -10.79 -0.01 -3.82 16 11 H 0.09 3.49 7.64 -2.39 -0.02 3.47 16 12 C -0.10 -3.43 4.86 30.59 0.15 -3.28 16 13 C -0.12 -2.76 5.92 30.59 0.18 -2.58 16 14 C -0.11 -2.26 5.80 30.60 0.18 -2.08 16 15 C -0.14 -3.26 4.74 30.59 0.14 -3.11 16 16 C 0.09 3.08 0.49 -10.79 -0.01 3.08 16 17 F -0.19 -7.30 15.19 44.97 0.68 -6.61 16 18 C 0.43 15.75 2.34 71.98 0.17 15.92 16 19 F -0.18 -8.21 13.98 44.97 0.63 -7.58 16 20 F -0.18 -5.69 16.52 44.97 0.74 -4.95 16 21 F -0.17 -5.95 16.28 44.97 0.73 -5.22 16 22 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 23 H -0.01 -0.75 7.88 -2.39 -0.02 -0.77 16 24 H 0.01 0.85 5.31 -2.39 -0.01 0.84 16 25 H 0.05 1.75 7.80 -2.39 -0.02 1.73 16 26 H 0.07 2.54 6.79 -2.39 -0.02 2.52 16 27 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.40 7.80 -2.39 -0.02 1.39 16 30 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.10 2.02 7.64 -2.39 -0.02 2.01 16 32 H 0.11 2.20 8.00 -2.38 -0.02 2.18 16 Total: -1.00 -66.01 267.64 7.82 -58.20 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: 1.13 Total: 1.51 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: 1.59 Total: -23.97 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: 0.28 Total: -57.74 kcal Atomic # 9 Polarization: -27.15 SS G_CDS: 2.79 Total: -24.37 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -66.01 7.82 -58.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143727.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.741 kcal (2) G-P(sol) polarization free energy of solvation -66.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds