Wall clock time and date at job start Mon Mar 30 2020 06:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99830 * 2 1 4 4 H 1.48501 * 109.47237 * 269.99723 * 3 2 1 5 5 H 1.48500 * 109.47280 * 29.99594 * 3 2 1 6 6 H 1.48498 * 109.47201 * 149.99909 * 3 2 1 7 7 C 1.37869 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00313 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00168 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47332 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46857 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.05384 * 54.96469 * 11 10 9 13 13 C 1.53869 * 110.03587 * 293.54496 * 11 10 9 14 14 C 1.54270 * 106.63967 * 240.69205 * 13 11 10 15 15 C 1.54961 * 104.16191 * 336.44607 * 14 13 11 16 16 C 1.54268 * 110.02861 * 176.37524 * 11 10 9 17 17 F 1.39900 * 110.48675 * 24.22053 * 16 11 10 18 18 C 1.52998 * 110.48927 * 261.70752 * 16 11 10 19 19 F 1.39903 * 109.47116 * 60.00156 * 18 16 11 20 20 F 1.39900 * 109.47077 * 180.02562 * 18 16 11 21 21 F 1.39892 * 109.47210 * 300.00037 * 18 16 11 22 22 H 0.96999 * 120.00609 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47187 * 59.99625 * 9 7 2 24 24 H 1.08999 * 109.46588 * 299.99675 * 9 7 2 25 25 H 1.09001 * 109.46954 * 59.99513 * 10 9 7 26 26 H 1.08996 * 109.46761 * 299.99856 * 10 9 7 27 27 H 1.09002 * 110.03268 * 0.02562 * 13 11 10 28 28 H 1.08995 * 110.03391 * 121.38598 * 13 11 10 29 29 H 1.08997 * 110.48585 * 95.09409 * 14 13 11 30 30 H 1.09002 * 110.48442 * 217.73292 * 14 13 11 31 31 H 1.09001 * 110.71970 * 279.57802 * 15 14 13 32 32 H 1.08991 * 110.92569 * 156.29385 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4804 -4.9870 0.0025 12 1 0.7848 -5.0174 -0.8362 13 6 0.7161 -5.1539 1.3275 14 6 1.2657 -6.4305 1.9968 15 6 1.8444 -7.2564 0.8201 16 6 2.4689 -6.1679 -0.0879 17 9 3.7271 -5.7912 0.3940 18 6 2.5767 -6.6669 -1.5302 19 9 3.0325 -5.6289 -2.3499 20 9 3.4767 -7.7365 -1.5875 21 9 1.3193 -7.0920 -1.9718 22 1 -0.4851 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6242 -2.5566 0.8903 25 1 2.8714 -3.6038 0.8922 26 1 2.8727 -3.6047 -0.8877 27 1 0.8898 -4.2906 1.9700 28 1 -0.3504 -5.2644 1.1320 29 1 2.0515 -6.1797 2.7093 30 1 0.4629 -6.9785 2.4901 31 1 1.0508 -7.7884 0.2954 32 1 2.6072 -7.9515 1.1705 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261153979.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:34 Heat of formation + Delta-G solvation = -229.859596 kcal Electronic energy + Delta-G solvation = -20045.498132 eV Core-core repulsion = 16311.328904 eV Total energy + Delta-G solvation = -3734.169228 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.22195 -48.05879 -47.60348 -47.40282 -37.91007 -33.71627 -31.63534 -29.96409 -27.85627 -25.23721 -23.83754 -21.53876 -20.76826 -19.50929 -18.51371 -18.26601 -17.98459 -16.47854 -15.50548 -15.37015 -14.88403 -14.44845 -14.39524 -14.35648 -14.04174 -13.95259 -13.77517 -13.72922 -13.49701 -13.13196 -12.61559 -12.28864 -11.74693 -11.30113 -11.20431 -11.05107 -10.89000 -10.82334 -10.73182 -10.46662 -10.17668 -9.68448 -9.32741 -9.05730 -8.33671 -5.99613 -4.01443 2.50462 3.33105 3.39209 3.43074 3.54571 3.69552 3.91021 4.19921 4.46645 4.51378 4.66705 5.06068 5.26905 5.31686 5.36284 5.38692 5.52268 5.65160 5.87365 5.98460 6.13356 6.33411 6.46024 6.60894 6.79566 7.08807 7.67584 7.80133 8.00247 8.43191 9.05304 9.62644 11.11695 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.030113 B = 0.006083 C = 0.005687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.622763 B = 4602.018942 C = 4922.759199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.106 4.106 11 C -0.107 4.107 12 H 0.092 0.908 13 C -0.116 4.116 14 C -0.120 4.120 15 C -0.141 4.141 16 C 0.076 3.924 17 F -0.168 7.168 18 C 0.440 3.560 19 F -0.168 7.168 20 F -0.181 7.181 21 F -0.172 7.172 22 H 0.260 0.740 23 H 0.015 0.985 24 H 0.020 0.980 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.277 -15.958 1.021 16.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.143 4.143 11 C -0.126 4.126 12 H 0.110 0.890 13 C -0.153 4.153 14 C -0.157 4.157 15 C -0.179 4.179 16 C 0.056 3.944 17 F -0.148 7.148 18 C 0.385 3.615 19 F -0.149 7.149 20 F -0.162 7.162 21 F -0.154 7.154 22 H 0.070 0.930 23 H 0.033 0.967 24 H 0.039 0.961 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.166 -15.833 1.002 16.011 hybrid contribution 0.631 0.873 -0.417 1.155 sum 2.797 -14.960 0.585 15.230 Atomic orbital electron populations 1.69957 1.06018 1.26574 1.51003 1.25004 0.94839 0.99210 0.95342 0.86610 0.79886 0.83495 0.78126 1.20674 1.21239 1.19862 1.21253 0.93113 0.91032 1.50409 0.92661 1.19106 0.93791 0.91016 0.97341 1.21737 0.98954 0.92113 1.01518 1.22542 0.95766 0.93798 1.00448 0.89003 1.22225 0.99580 0.98171 0.95369 1.22381 1.00741 0.95994 0.96618 1.23156 1.01340 0.96299 0.97061 1.23020 0.83373 0.99910 0.88087 1.92937 1.41171 1.92511 1.88155 1.20924 0.74012 0.75916 0.90674 1.93253 1.88862 1.57728 1.75047 1.93187 1.68404 1.57545 1.97059 1.93175 1.41111 1.90221 1.90859 0.93034 0.96667 0.96136 0.92216 0.92672 0.89474 0.90971 0.90759 0.90512 0.88678 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.62 4.79 -27.88 -0.13 0.48 16 10 C -0.11 -2.18 3.74 -26.73 -0.10 -2.28 16 11 C -0.11 -1.76 2.22 -89.50 -0.20 -1.96 16 12 H 0.09 1.52 7.35 -51.93 -0.38 1.14 16 13 C -0.12 -1.67 5.95 -25.61 -0.15 -1.82 16 14 C -0.12 -1.36 6.84 -25.03 -0.17 -1.53 16 15 C -0.14 -1.58 5.97 -24.70 -0.15 -1.73 16 16 C 0.08 1.11 0.79 -88.96 -0.07 1.04 16 17 F -0.17 -2.73 15.58 2.25 0.04 -2.70 16 18 C 0.44 6.44 2.46 37.16 0.09 6.53 16 19 F -0.17 -2.80 16.38 2.25 0.04 -2.76 16 20 F -0.18 -2.53 17.17 2.25 0.04 -2.49 16 21 F -0.17 -2.38 15.80 2.25 0.04 -2.34 16 22 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 23 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.02 0.53 6.90 -51.93 -0.36 0.17 16 25 H 0.06 1.24 7.74 -51.93 -0.40 0.83 16 26 H 0.05 1.18 7.44 -51.93 -0.39 0.79 16 27 H 0.09 1.41 6.78 -51.93 -0.35 1.06 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 0.94 7.36 -51.93 -0.38 0.56 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 276.73 15.07 4.17 4.17 Total: -1.00 -29.72 276.73 -5.18 -34.90 By element: Atomic # 1 Polarization: -0.78 SS G_CDS: -3.92 Total: -4.70 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -1.29 Total: -14.80 kcal Atomic # 7 Polarization: -26.79 SS G_CDS: 0.74 Total: -26.06 kcal Atomic # 9 Polarization: -10.44 SS G_CDS: 0.15 Total: -10.29 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.72 -5.18 -34.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261153979.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.960 kcal (2) G-P(sol) polarization free energy of solvation -29.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds