Wall clock time and date at job start Mon Mar 30 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.01246 * 305.05500 * 11 10 9 13 13 C 1.53868 * 110.03784 * 66.45190 * 11 10 9 14 14 C 1.54272 * 106.60163 * 119.28268 * 13 11 10 15 15 C 1.54884 * 104.19141 * 23.61433 * 14 13 11 16 16 C 1.54268 * 110.03067 * 183.61907 * 11 10 9 17 17 F 1.39902 * 110.48918 * 335.78179 * 16 11 10 18 18 C 1.53001 * 110.48504 * 98.42436 * 16 11 10 19 19 F 1.39895 * 109.47625 * 59.99846 * 18 16 11 20 20 F 1.39909 * 109.47223 * 180.02562 * 18 16 11 21 21 F 1.39895 * 109.47351 * 299.99693 * 18 16 11 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 26 26 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 27 27 H 1.08997 * 110.03548 * 238.57244 * 13 11 10 28 28 H 1.09001 * 110.03193 * 359.94945 * 13 11 10 29 29 H 1.08994 * 110.48330 * 142.28924 * 14 13 11 30 30 H 1.08997 * 110.48882 * 264.93329 * 14 13 11 31 31 H 1.09001 * 110.76252 * 80.37122 * 15 14 13 32 32 H 1.08999 * 110.75740 * 203.74185 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 1 0.7837 -5.0199 0.8209 13 6 0.7168 -5.1485 -1.3433 14 6 1.2681 -6.4223 -2.0168 15 6 1.8444 -7.2531 -0.8436 16 6 2.4684 -6.1684 0.0692 17 9 3.7271 -5.7898 -0.4101 18 6 2.5725 -6.6753 1.5091 19 9 1.3139 -7.1029 1.9452 20 9 3.4733 -7.7445 1.5631 21 9 3.0262 -5.6419 2.3357 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 2.8718 -3.6005 -0.9002 26 1 2.8717 -3.6084 0.8798 27 1 -0.3498 -5.2606 -1.1491 28 1 0.8907 -4.2825 -1.9820 29 1 0.4662 -6.9687 -2.5134 30 1 2.0548 -6.1684 -2.7272 31 1 1.0505 -7.7872 -0.3216 32 1 2.6081 -7.9450 -1.1987 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261153980.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:36 Heat of formation + Delta-G solvation = -245.388845 kcal Electronic energy + Delta-G solvation = -20046.001988 eV Core-core repulsion = 16311.159361 eV Total energy + Delta-G solvation = -3734.842627 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -51.39545 -49.25371 -48.79507 -48.59815 -39.13782 -35.64324 -33.45401 -31.08568 -29.50622 -26.65614 -25.45566 -23.10168 -21.92214 -20.91586 -19.70752 -19.43474 -19.20674 -18.51233 -16.89158 -16.59375 -16.40664 -16.11484 -15.61580 -15.57119 -15.21174 -15.18574 -14.95252 -14.91840 -14.74999 -14.45945 -14.35613 -13.93096 -13.29712 -12.94643 -12.74073 -12.50061 -12.35957 -12.25801 -12.05099 -11.95601 -11.46360 -11.41327 -11.27451 -11.06409 -10.53640 -8.20446 -6.30691 1.34127 1.39012 1.41573 1.49586 2.38519 2.40235 2.56318 2.75157 3.08480 3.12728 3.35807 3.52781 3.98119 4.14057 4.18911 4.27972 4.49778 4.54583 4.78734 4.80322 4.87727 5.06670 5.13230 5.16377 5.30027 5.37701 5.51278 5.74079 5.85297 6.25533 6.84917 7.37920 8.90827 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.030141 B = 0.006079 C = 0.005686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.743805 B = 4604.539763 C = 4923.547539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.960 3.040 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.548 4.548 8 H 0.054 0.946 9 C 0.032 3.968 10 C -0.092 4.092 11 C -0.108 4.108 12 H 0.088 0.912 13 C -0.118 4.118 14 C -0.111 4.111 15 C -0.132 4.132 16 C 0.074 3.926 17 F -0.179 7.179 18 C 0.440 3.560 19 F -0.165 7.165 20 F -0.174 7.174 21 F -0.185 7.185 22 H 0.264 0.736 23 H -0.011 1.011 24 H 0.008 0.992 25 H 0.056 0.944 26 H 0.042 0.958 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.627 -17.009 -1.710 17.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.196 1.196 7 C -0.586 4.586 8 H 0.072 0.928 9 C -0.005 4.005 10 C -0.130 4.130 11 C -0.127 4.127 12 H 0.107 0.893 13 C -0.155 4.155 14 C -0.149 4.149 15 C -0.170 4.170 16 C 0.054 3.946 17 F -0.159 7.159 18 C 0.386 3.614 19 F -0.147 7.147 20 F -0.155 7.155 21 F -0.166 7.166 22 H 0.073 0.927 23 H 0.008 0.992 24 H 0.026 0.974 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.126 0.874 30 H 0.092 0.908 31 H 0.133 0.867 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.518 -16.896 -1.687 17.166 hybrid contribution 0.508 1.206 0.626 1.450 sum 3.027 -15.690 -1.061 16.015 Atomic orbital electron populations 1.70069 1.07558 1.27808 1.51496 1.25901 0.95778 1.03051 0.94705 0.85579 0.78406 0.78468 0.79085 1.19190 1.20518 1.19550 1.21672 0.93388 0.92712 1.50808 0.92805 1.18960 0.94070 0.92176 0.95338 1.21461 0.97891 0.92985 1.00626 1.22441 0.96033 0.92418 1.01781 0.89349 1.22215 1.00149 0.99202 0.93937 1.22362 1.01597 0.94378 0.96515 1.23252 1.02189 0.95476 0.96037 1.23154 0.82403 1.00120 0.88920 1.92913 1.41918 1.92692 1.88376 1.20947 0.74263 0.75828 0.90396 1.93189 1.40521 1.90017 1.90950 1.93200 1.68164 1.57143 1.97017 1.93220 1.89183 1.58968 1.75229 0.92711 0.99235 0.97411 0.92571 0.93925 0.89920 0.91903 0.87443 0.90800 0.86714 0.87250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.43 13.29 21.45 0.28 -56.15 16 2 C 0.00 0.22 5.46 84.66 0.46 0.68 16 3 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.55 -31.80 9.11 25.60 0.23 -31.57 16 8 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 9 C 0.03 1.66 4.79 29.85 0.14 1.80 16 10 C -0.09 -3.89 3.75 30.59 0.11 -3.78 16 11 C -0.11 -3.53 2.22 -10.07 -0.02 -3.55 16 12 H 0.09 2.93 7.36 -2.39 -0.02 2.91 16 13 C -0.12 -3.28 5.95 31.32 0.19 -3.09 16 14 C -0.11 -2.19 6.83 31.67 0.22 -1.97 16 15 C -0.13 -2.53 5.97 31.88 0.19 -2.34 16 16 C 0.07 2.05 0.79 -9.72 -0.01 2.04 16 17 F -0.18 -5.64 15.58 44.97 0.70 -4.94 16 18 C 0.44 12.31 2.46 71.98 0.18 12.49 16 19 F -0.17 -4.27 15.79 44.97 0.71 -3.56 16 20 F -0.17 -4.53 17.17 44.97 0.77 -3.76 16 21 F -0.18 -6.14 16.39 44.97 0.74 -5.40 16 22 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 23 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 24 H 0.01 0.41 6.90 -2.39 -0.02 0.40 16 25 H 0.06 2.38 7.74 -2.38 -0.02 2.36 16 26 H 0.04 1.87 7.46 -2.39 -0.02 1.85 16 27 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.06 2.06 6.77 -2.39 -0.02 2.04 16 29 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.11 1.80 7.35 -2.39 -0.02 1.78 16 32 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -64.30 276.74 8.05 -56.25 By element: Atomic # 1 Polarization: -1.13 SS G_CDS: 1.13 Total: -0.01 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: 1.69 Total: -29.29 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.28 Total: -56.15 kcal Atomic # 9 Polarization: -20.58 SS G_CDS: 2.92 Total: -17.66 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -64.30 8.05 -56.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261153980.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.143 kcal (2) G-P(sol) polarization free energy of solvation -64.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -253.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds