Wall clock time and date at job start Mon Mar 30 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00209 * 2 1 4 4 H 1.48498 * 109.46940 * 270.00486 * 3 2 1 5 5 H 1.48499 * 109.46869 * 30.00358 * 3 2 1 6 6 H 1.48497 * 109.46862 * 150.00468 * 3 2 1 7 7 C 1.37885 * 119.99631 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99333 * 179.97438 * 7 2 1 10 10 C 1.53010 * 109.46558 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46792 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.05518 * 54.96155 * 11 10 9 13 13 C 1.53869 * 110.03152 * 293.54328 * 11 10 9 14 14 C 1.54266 * 106.60029 * 240.71717 * 13 11 10 15 15 C 1.54891 * 104.19455 * 23.61419 * 14 13 11 16 16 C 1.54266 * 110.02866 * 176.37656 * 11 10 9 17 17 F 1.39891 * 110.48641 * 214.35087 * 16 11 10 18 18 C 1.52995 * 110.59936 * 336.94466 * 16 11 10 19 19 F 1.39905 * 109.46999 * 176.29565 * 18 16 11 20 20 F 1.39900 * 109.47038 * 296.28859 * 18 16 11 21 21 F 1.39896 * 109.47756 * 56.29132 * 18 16 11 22 22 H 0.97000 * 119.99413 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47524 * 60.00325 * 9 7 2 24 24 H 1.09000 * 109.47632 * 299.99690 * 9 7 2 25 25 H 1.08998 * 109.46856 * 60.00015 * 10 9 7 26 26 H 1.08999 * 109.46969 * 299.99634 * 10 9 7 27 27 H 1.09000 * 110.03397 * 121.43285 * 13 11 10 28 28 H 1.09001 * 110.03290 * 0.02562 * 13 11 10 29 29 H 1.09000 * 110.48706 * 142.28905 * 14 13 11 30 30 H 1.08995 * 110.48742 * 264.92973 * 14 13 11 31 31 H 1.08997 * 110.75776 * 80.37124 * 15 14 13 32 32 H 1.08994 * 110.75338 * 203.74411 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1942 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 6 5.5515 -2.6367 -0.0009 12 1 5.9253 -2.0488 0.8374 13 6 6.0786 -2.0593 -1.3262 14 6 6.9090 -3.1750 -1.9937 15 6 6.3495 -4.4831 -1.3812 16 6 6.0799 -4.0831 0.0908 17 9 7.2640 -4.1256 0.8344 18 6 5.0262 -5.0028 0.7110 19 9 5.4960 -6.3206 0.7056 20 9 4.7751 -4.6028 2.0279 21 9 3.8440 -4.9261 -0.0330 22 1 -0.4849 0.8401 0.0004 23 1 3.8752 -0.6805 0.8888 24 1 3.8746 -0.6801 -0.8911 25 1 3.6578 -3.1507 -0.8907 26 1 3.6585 -3.1503 0.8893 27 1 6.7082 -1.1912 -1.1312 28 1 5.2444 -1.7787 -1.9693 29 1 6.7617 -3.1661 -3.0737 30 1 7.9655 -3.0614 -1.7510 31 1 5.4246 -4.7771 -1.8772 32 1 7.0889 -5.2820 -1.4352 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261153982.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:42 Heat of formation + Delta-G solvation = -211.572424 kcal Electronic energy + Delta-G solvation = -20365.768034 eV Core-core repulsion = 16632.391797 eV Total energy + Delta-G solvation = -3733.376237 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.25280 -48.11092 -47.59632 -47.39333 -38.17234 -33.66313 -31.71864 -30.04244 -28.32679 -25.30796 -23.91222 -21.42466 -20.73900 -19.96133 -18.41026 -18.17102 -17.69239 -16.72495 -16.22272 -15.42758 -14.74528 -14.39798 -14.32369 -14.18497 -14.08407 -13.92282 -13.74056 -13.66154 -13.63296 -13.32691 -12.66119 -12.47408 -11.80747 -11.51144 -11.46690 -11.22625 -10.96417 -10.82220 -10.75437 -10.39920 -9.86771 -9.71762 -9.57948 -9.16574 -8.53757 -6.04089 -4.02032 2.55129 3.29213 3.37348 3.40414 3.59925 3.66533 3.95604 4.11661 4.44513 4.50239 4.60232 4.97199 5.16894 5.24643 5.29666 5.31319 5.47219 5.59177 5.73642 5.91142 5.98527 6.11732 6.29601 6.36874 6.52623 6.84653 7.24187 7.37437 7.78256 8.54278 9.01764 9.58090 11.09443 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.028169 B = 0.007294 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.746526 B = 3837.655826 C = 4318.961610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.116 4.116 11 C -0.109 4.109 12 H 0.094 0.906 13 C -0.118 4.118 14 C -0.120 4.120 15 C -0.140 4.140 16 C 0.075 3.925 17 F -0.177 7.177 18 C 0.442 3.558 19 F -0.183 7.183 20 F -0.171 7.171 21 F -0.157 7.157 22 H 0.263 0.737 23 H 0.015 0.985 24 H 0.015 0.985 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.799 -8.548 -2.549 17.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.153 4.153 11 C -0.128 4.128 12 H 0.112 0.888 13 C -0.155 4.155 14 C -0.157 4.157 15 C -0.177 4.177 16 C 0.055 3.945 17 F -0.157 7.157 18 C 0.388 3.612 19 F -0.165 7.165 20 F -0.152 7.152 21 F -0.138 7.138 22 H 0.072 0.928 23 H 0.033 0.967 24 H 0.033 0.967 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.645 -8.450 -2.505 17.093 hybrid contribution 0.236 0.710 0.352 0.827 sum 14.881 -7.740 -2.153 16.911 Atomic orbital electron populations 1.69918 1.06293 1.26829 1.51184 1.25033 0.94720 0.99110 0.94642 0.86797 0.80421 0.83737 0.78455 1.20308 1.21410 1.18998 1.21122 0.89398 0.94502 1.50676 0.90959 1.19595 0.97254 0.91599 0.96353 1.22246 0.89001 1.01418 1.02619 1.22568 0.99772 0.89846 1.00599 0.88811 1.22261 1.00173 0.97845 0.95266 1.22358 0.99776 0.93010 1.00583 1.23137 1.03935 0.99985 0.90659 1.23061 0.80679 0.98410 0.92346 1.92919 1.47237 1.97375 1.78146 1.20761 0.83252 0.79818 0.77407 1.93182 1.88397 1.38504 1.96376 1.93212 1.94686 1.90221 1.37120 1.93274 1.48645 1.95754 1.76109 0.92763 0.96688 0.96705 0.90722 0.91757 0.91007 0.89476 0.90250 0.91046 0.88201 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.25 3.86 -27.88 -0.11 -0.36 16 10 C -0.12 -2.22 2.81 -26.72 -0.08 -2.29 16 11 C -0.11 -1.69 2.56 -89.50 -0.23 -1.92 16 12 H 0.09 1.47 8.12 -51.93 -0.42 1.05 16 13 C -0.12 -1.56 5.95 -25.62 -0.15 -1.71 16 14 C -0.12 -1.26 6.83 -25.07 -0.17 -1.43 16 15 C -0.14 -1.57 5.90 -24.73 -0.15 -1.72 16 16 C 0.07 1.05 0.94 -88.96 -0.08 0.97 16 17 F -0.18 -2.56 16.92 2.25 0.04 -2.52 16 18 C 0.44 6.79 2.16 37.16 0.08 6.87 16 19 F -0.18 -2.64 17.11 2.25 0.04 -2.60 16 20 F -0.17 -2.89 15.89 2.25 0.04 -2.85 16 21 F -0.16 -2.56 12.46 2.25 0.03 -2.54 16 22 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 23 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 24 H 0.01 0.33 6.33 -51.93 -0.33 0.00 16 25 H 0.07 1.42 6.82 -51.93 -0.35 1.06 16 26 H 0.06 1.30 5.30 -51.93 -0.28 1.03 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.09 1.24 6.78 -51.93 -0.35 0.89 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.10 1.10 7.49 -51.93 -0.39 0.71 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 267.59 15.07 4.03 4.03 Total: -1.00 -30.26 267.59 -4.81 -35.07 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: -3.77 Total: -3.53 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -1.31 Total: -14.82 kcal Atomic # 7 Polarization: -27.91 SS G_CDS: 0.77 Total: -27.14 kcal Atomic # 9 Polarization: -10.65 SS G_CDS: 0.14 Total: -10.51 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.26 -4.81 -35.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261153982.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.500 kcal (2) G-P(sol) polarization free energy of solvation -30.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds