Wall clock time and date at job start Mon Mar 30 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00209 * 2 1 4 4 H 1.48498 * 109.46940 * 270.00486 * 3 2 1 5 5 H 1.48499 * 109.46869 * 30.00358 * 3 2 1 6 6 H 1.48497 * 109.46862 * 150.00468 * 3 2 1 7 7 C 1.37885 * 119.99631 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99333 * 179.97438 * 7 2 1 10 10 C 1.53010 * 109.46558 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46792 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.05518 * 54.96155 * 11 10 9 13 13 C 1.53869 * 110.03152 * 293.54328 * 11 10 9 14 14 C 1.54266 * 106.60029 * 240.71717 * 13 11 10 15 15 C 1.54891 * 104.19455 * 23.61419 * 14 13 11 16 16 C 1.54266 * 110.02866 * 176.37656 * 11 10 9 17 17 F 1.39891 * 110.48641 * 214.35087 * 16 11 10 18 18 C 1.52995 * 110.59936 * 336.94466 * 16 11 10 19 19 F 1.39905 * 109.46999 * 176.29565 * 18 16 11 20 20 F 1.39900 * 109.47038 * 296.28859 * 18 16 11 21 21 F 1.39896 * 109.47756 * 56.29132 * 18 16 11 22 22 H 0.97000 * 119.99413 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47524 * 60.00325 * 9 7 2 24 24 H 1.09000 * 109.47632 * 299.99690 * 9 7 2 25 25 H 1.08998 * 109.46856 * 60.00015 * 10 9 7 26 26 H 1.08999 * 109.46969 * 299.99634 * 10 9 7 27 27 H 1.09000 * 110.03397 * 121.43285 * 13 11 10 28 28 H 1.09001 * 110.03290 * 0.02562 * 13 11 10 29 29 H 1.09000 * 110.48706 * 142.28905 * 14 13 11 30 30 H 1.08995 * 110.48742 * 264.92973 * 14 13 11 31 31 H 1.08997 * 110.75776 * 80.37124 * 15 14 13 32 32 H 1.08994 * 110.75338 * 203.74411 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1942 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 6 5.5515 -2.6367 -0.0009 12 1 5.9253 -2.0488 0.8374 13 6 6.0786 -2.0593 -1.3262 14 6 6.9090 -3.1750 -1.9937 15 6 6.3495 -4.4831 -1.3812 16 6 6.0799 -4.0831 0.0908 17 9 7.2640 -4.1256 0.8344 18 6 5.0262 -5.0028 0.7110 19 9 5.4960 -6.3206 0.7056 20 9 4.7751 -4.6028 2.0279 21 9 3.8440 -4.9261 -0.0330 22 1 -0.4849 0.8401 0.0004 23 1 3.8752 -0.6805 0.8888 24 1 3.8746 -0.6801 -0.8911 25 1 3.6578 -3.1507 -0.8907 26 1 3.6585 -3.1503 0.8893 27 1 6.7082 -1.1912 -1.1312 28 1 5.2444 -1.7787 -1.9693 29 1 6.7617 -3.1661 -3.0737 30 1 7.9655 -3.0614 -1.7510 31 1 5.4246 -4.7771 -1.8772 32 1 7.0889 -5.2820 -1.4352 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261153982.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:42 Heat of formation + Delta-G solvation = -228.623502 kcal Electronic energy + Delta-G solvation = -20366.507424 eV Core-core repulsion = 16632.391797 eV Total energy + Delta-G solvation = -3734.115627 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -51.49783 -49.28836 -48.81803 -48.64215 -39.31369 -35.51637 -33.53759 -31.14033 -29.84857 -26.69925 -25.39427 -22.90525 -21.93327 -21.25163 -19.67066 -19.41696 -19.12432 -18.60117 -17.42058 -16.47063 -16.33024 -15.82289 -15.63487 -15.58545 -15.38435 -15.20525 -15.03549 -14.95464 -14.84636 -14.63874 -14.42734 -13.91821 -13.28306 -12.99374 -12.80361 -12.41831 -12.29329 -12.09100 -11.98134 -11.75533 -11.52239 -11.36372 -11.23936 -11.17973 -10.73953 -8.27885 -6.32030 1.36263 1.37181 1.39296 1.50878 2.37371 2.40824 2.55280 2.75612 3.03365 3.07528 3.33741 3.50090 4.02487 4.09636 4.13157 4.28954 4.45644 4.53523 4.70098 4.73239 4.88266 4.96888 5.08468 5.14241 5.22159 5.39803 5.47220 5.57793 5.67155 6.30208 6.76209 7.32196 8.89230 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.028169 B = 0.007294 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.746526 B = 3837.655826 C = 4318.961610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.952 3.048 4 H -0.261 1.261 5 H -0.287 1.287 6 H -0.245 1.245 7 C -0.531 4.531 8 H 0.027 0.973 9 C -0.007 4.007 10 C -0.106 4.106 11 C -0.108 4.108 12 H 0.091 0.909 13 C -0.120 4.120 14 C -0.111 4.111 15 C -0.138 4.138 16 C 0.079 3.921 17 F -0.176 7.176 18 C 0.436 3.564 19 F -0.177 7.177 20 F -0.185 7.185 21 F -0.167 7.167 22 H 0.265 0.735 23 H 0.015 0.985 24 H 0.032 0.968 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.604 -7.848 -3.529 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.195 4.195 3 Si 0.775 3.225 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.168 1.168 7 C -0.569 4.569 8 H 0.046 0.954 9 C -0.045 4.045 10 C -0.144 4.144 11 C -0.127 4.127 12 H 0.110 0.890 13 C -0.157 4.157 14 C -0.148 4.148 15 C -0.175 4.175 16 C 0.060 3.940 17 F -0.156 7.156 18 C 0.381 3.619 19 F -0.158 7.158 20 F -0.166 7.166 21 F -0.148 7.148 22 H 0.074 0.926 23 H 0.033 0.967 24 H 0.050 0.950 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.104 0.896 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 17.470 -7.772 -3.488 19.436 hybrid contribution -0.728 0.384 0.702 1.082 sum 16.742 -7.388 -2.786 18.511 Atomic orbital electron populations 1.70087 1.08436 1.28110 1.52827 1.26068 0.95627 1.03674 0.94157 0.85634 0.79493 0.77951 0.79453 1.18584 1.21347 1.16820 1.21493 0.92304 0.92931 1.50211 0.95434 1.19535 0.93649 0.94406 0.96862 1.22050 0.92097 0.98553 1.01691 1.22477 0.96679 0.91269 1.02282 0.89026 1.22289 1.00433 0.99331 0.93682 1.22369 0.99983 0.90929 1.01496 1.23256 1.04800 1.01309 0.88165 1.23077 0.80044 0.97030 0.93897 1.92921 1.47005 1.97281 1.78425 1.21112 0.83411 0.80513 0.76875 1.93189 1.88208 1.38110 1.96303 1.93183 1.94827 1.90399 1.38198 1.93250 1.49456 1.95839 1.76254 0.92582 0.96695 0.94967 0.90928 0.93651 0.89625 0.90601 0.88163 0.89472 0.88094 0.87155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.56 13.96 21.45 0.30 -60.26 16 2 C 0.00 0.06 5.47 84.66 0.46 0.52 16 3 Si 0.95 43.93 27.47 68.60 1.88 45.81 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 5 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.24 -10.40 6.54 99.48 0.65 -9.75 16 7 C -0.53 -30.91 9.66 25.60 0.25 -30.66 16 8 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 9 C -0.01 -0.33 3.86 29.85 0.12 -0.22 16 10 C -0.11 -4.07 2.81 30.60 0.09 -3.99 16 11 C -0.11 -3.16 2.56 -10.07 -0.03 -3.18 16 12 H 0.09 2.71 8.12 -2.39 -0.02 2.69 16 13 C -0.12 -2.79 5.95 31.32 0.19 -2.61 16 14 C -0.11 -1.88 6.83 31.67 0.22 -1.66 16 15 C -0.14 -2.68 5.90 31.89 0.19 -2.49 16 16 C 0.08 2.07 0.94 -9.72 -0.01 2.07 16 17 F -0.18 -4.67 16.92 44.97 0.76 -3.91 16 18 C 0.44 13.09 2.16 71.98 0.16 13.24 16 19 F -0.18 -4.89 17.11 44.97 0.77 -4.12 16 20 F -0.18 -6.27 15.89 44.97 0.71 -5.55 16 21 F -0.17 -5.51 12.46 44.97 0.56 -4.95 16 22 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 23 H 0.01 0.68 7.20 -2.39 -0.02 0.66 16 24 H 0.03 1.37 6.33 -2.39 -0.02 1.35 16 25 H 0.07 2.77 6.82 -2.39 -0.02 2.76 16 26 H 0.04 1.88 5.30 -2.39 -0.01 1.87 16 27 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.08 1.95 6.78 -2.39 -0.02 1.93 16 29 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.10 1.96 7.49 -2.39 -0.02 1.94 16 32 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -66.60 267.59 7.69 -58.91 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: 1.08 Total: 3.02 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: 1.62 Total: -28.96 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: 0.30 Total: -60.26 kcal Atomic # 9 Polarization: -21.33 SS G_CDS: 2.81 Total: -18.52 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.88 Total: 45.81 kcal Total: -66.60 7.69 -58.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261153982.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.713 kcal (2) G-P(sol) polarization free energy of solvation -66.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds