Wall clock time and date at job start Mon Mar 30 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 H 1.09007 * 109.46773 * 55.00766 * 10 9 7 12 12 C 1.52992 * 109.47243 * 295.00691 * 10 9 7 13 13 C 1.53004 * 109.46904 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47202 * 59.99994 * 13 12 10 15 15 C 1.53000 * 109.47118 * 299.99636 * 14 13 12 16 16 F 1.39897 * 109.47316 * 300.00470 * 15 14 13 17 17 C 1.52995 * 109.47118 * 179.97438 * 15 14 13 18 18 F 1.39903 * 109.47365 * 60.00405 * 17 15 14 19 19 F 1.39900 * 109.47004 * 180.02562 * 17 15 14 20 20 F 1.39903 * 109.47541 * 300.00103 * 17 15 14 21 21 C 1.52995 * 109.47161 * 175.00101 * 10 9 7 22 22 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 24 24 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 25 25 H 1.09000 * 109.46966 * 299.99721 * 12 10 9 26 26 H 1.09003 * 109.47367 * 59.99799 * 12 10 9 27 27 H 1.09006 * 109.47088 * 180.02562 * 13 12 10 28 28 H 1.09001 * 109.46771 * 299.99445 * 13 12 10 29 29 H 1.09000 * 109.47246 * 59.99758 * 14 13 12 30 30 H 1.09004 * 109.46952 * 179.97438 * 14 13 12 31 31 H 1.09001 * 109.47261 * 300.00166 * 21 10 9 32 32 H 1.09000 * 109.46927 * 60.00354 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0108 11 1 3.5835 -3.1738 -0.8519 12 6 3.6223 -3.3231 1.2968 13 6 4.1318 -4.7658 1.2915 14 6 5.6560 -4.7678 1.1592 15 6 6.0554 -4.0812 -0.1485 16 9 5.4926 -4.7705 -1.2279 17 6 7.5796 -4.0827 -0.2805 18 9 8.0461 -5.4017 -0.2851 19 9 7.9448 -3.4544 -1.4759 20 9 8.1420 -3.3930 0.7990 21 6 5.5459 -2.6380 -0.1429 22 1 -0.4850 0.8400 -0.0004 23 1 3.8713 -0.6783 -0.8962 24 1 3.8786 -0.6819 0.8837 25 1 4.0604 -2.7857 2.1379 26 1 2.5363 -3.3220 1.3909 27 1 3.8469 -5.2552 2.2230 28 1 3.6933 -5.3029 0.4505 29 1 6.0945 -4.2307 2.0003 30 1 6.0191 -5.7957 1.1559 31 1 5.8303 -2.1488 -1.0745 32 1 5.9840 -2.1006 0.6982 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261160851.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:48 Heat of formation + Delta-G solvation = -231.576966 kcal Electronic energy + Delta-G solvation = -20080.127758 eV Core-core repulsion = 16345.884059 eV Total energy + Delta-G solvation = -3734.243699 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.36108 -48.16395 -47.75025 -47.50754 -37.98228 -33.51140 -31.66549 -31.20984 -27.63284 -25.84345 -23.15303 -22.17351 -20.60331 -19.52133 -18.44005 -18.41963 -17.96169 -16.79943 -15.79920 -15.54092 -14.61401 -14.51632 -14.41822 -14.17825 -14.14168 -14.03217 -13.89880 -13.88053 -13.67301 -13.12246 -12.57727 -12.26040 -12.17446 -11.85758 -11.47884 -11.35186 -10.93774 -10.77814 -10.56311 -10.23882 -9.82053 -9.73691 -9.45741 -9.12164 -8.55873 -6.06459 -4.04421 2.39659 3.28901 3.36857 3.39217 3.43541 3.72447 3.79721 4.32550 4.42876 4.52013 4.63166 5.18563 5.22220 5.27447 5.43973 5.51138 5.53333 5.77054 5.84189 6.03684 6.10562 6.34684 6.36873 6.71950 6.79261 6.94776 7.18521 7.36574 7.75489 8.50758 8.98156 9.55926 11.06695 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.032961 B = 0.006319 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.284937 B = 4429.904455 C = 4817.195368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.075 0.925 9 C -0.008 4.008 10 C -0.068 4.068 11 H 0.073 0.927 12 C -0.111 4.111 13 C -0.118 4.118 14 C -0.140 4.140 15 C 0.091 3.909 16 F -0.174 7.174 17 C 0.433 3.567 18 F -0.179 7.179 19 F -0.175 7.175 20 F -0.172 7.172 21 C -0.141 4.141 22 H 0.263 0.737 23 H 0.013 0.987 24 H 0.018 0.982 25 H 0.058 0.942 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.419 -8.843 2.174 17.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.554 4.554 8 H 0.093 0.907 9 C -0.045 4.045 10 C -0.086 4.086 11 H 0.092 0.908 12 C -0.148 4.148 13 C -0.155 4.155 14 C -0.177 4.177 15 C 0.071 3.929 16 F -0.154 7.154 17 C 0.378 3.622 18 F -0.160 7.160 19 F -0.156 7.156 20 F -0.154 7.154 21 C -0.179 4.179 22 H 0.073 0.927 23 H 0.031 0.969 24 H 0.036 0.964 25 H 0.077 0.923 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 14.284 -8.742 2.143 16.884 hybrid contribution 0.743 0.876 -0.242 1.174 sum 15.027 -7.866 1.901 17.068 Atomic orbital electron populations 1.69909 1.06264 1.26866 1.51140 1.25017 0.94702 0.99085 0.94639 0.86825 0.80371 0.83838 0.78517 1.20343 1.21427 1.19032 1.21093 0.89182 0.94461 1.50702 0.90712 1.19612 0.97475 0.91002 0.96446 1.21006 0.89554 0.99886 0.98189 0.90834 1.21608 1.02931 0.92779 0.97510 1.21571 0.92046 0.99349 1.02544 1.22195 1.00221 1.01211 0.94107 1.22167 0.85468 0.97513 0.87777 1.92944 1.85161 1.80878 1.56417 1.21206 0.92850 0.73890 0.74228 1.93189 1.90619 1.36013 1.96166 1.93207 1.93210 1.82377 1.46798 1.93188 1.87057 1.79642 1.55467 1.22436 1.00700 0.90161 1.04613 0.92746 0.96883 0.96380 0.92300 0.89623 0.91082 0.91193 0.89002 0.90143 0.89872 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.28 27.46 -169.99 -4.67 16.62 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.15 6.55 56.52 0.37 -5.78 16 7 C -0.52 -14.03 8.96 -34.44 -0.31 -14.34 16 8 H 0.07 2.17 7.30 -52.49 -0.38 1.79 16 9 C -0.01 -0.18 3.52 -27.88 -0.10 -0.28 16 10 C -0.07 -1.25 2.02 -90.62 -0.18 -1.43 16 11 H 0.07 1.44 7.80 -51.92 -0.41 1.04 16 12 C -0.11 -1.84 5.01 -26.73 -0.13 -1.97 16 13 C -0.12 -1.56 5.80 -26.73 -0.16 -1.71 16 14 C -0.14 -1.68 4.75 -26.73 -0.13 -1.81 16 15 C 0.09 1.26 0.69 -90.59 -0.06 1.19 16 16 F -0.17 -2.70 15.73 2.25 0.04 -2.66 16 17 C 0.43 5.73 2.44 37.15 0.09 5.82 16 18 F -0.18 -2.32 16.78 2.25 0.04 -2.29 16 19 F -0.17 -2.46 16.78 2.25 0.04 -2.43 16 20 F -0.17 -2.17 16.28 2.25 0.04 -2.14 16 21 C -0.14 -2.17 4.04 -26.71 -0.11 -2.28 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.01 0.29 7.56 -51.93 -0.39 -0.10 16 24 H 0.02 0.40 7.21 -51.93 -0.37 0.03 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.09 1.62 6.95 -51.93 -0.36 1.25 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.97 7.80 -51.93 -0.41 0.56 16 29 H 0.09 0.99 7.80 -51.93 -0.41 0.59 16 30 H 0.08 0.86 7.80 -51.93 -0.41 0.45 16 31 H 0.08 1.27 7.80 -51.93 -0.41 0.87 16 32 H 0.09 1.27 7.80 -51.93 -0.41 0.86 16 LS Contribution 270.87 15.07 4.08 4.08 Total: -1.00 -28.79 270.87 -4.80 -33.59 By element: Atomic # 1 Polarization: 0.70 SS G_CDS: -3.95 Total: -3.26 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -1.18 Total: -15.01 kcal Atomic # 7 Polarization: -27.28 SS G_CDS: 0.77 Total: -26.51 kcal Atomic # 9 Polarization: -9.66 SS G_CDS: 0.15 Total: -9.51 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.79 -4.80 -33.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261160851.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.988 kcal (2) G-P(sol) polarization free energy of solvation -28.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds