Wall clock time and date at job start Mon Mar 30 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 H 1.09007 * 109.46773 * 55.00766 * 10 9 7 12 12 C 1.52992 * 109.47243 * 295.00691 * 10 9 7 13 13 C 1.53004 * 109.46904 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47202 * 59.99994 * 13 12 10 15 15 C 1.53000 * 109.47118 * 299.99636 * 14 13 12 16 16 F 1.39897 * 109.47316 * 300.00470 * 15 14 13 17 17 C 1.52995 * 109.47118 * 179.97438 * 15 14 13 18 18 F 1.39903 * 109.47365 * 60.00405 * 17 15 14 19 19 F 1.39900 * 109.47004 * 180.02562 * 17 15 14 20 20 F 1.39903 * 109.47541 * 300.00103 * 17 15 14 21 21 C 1.52995 * 109.47161 * 175.00101 * 10 9 7 22 22 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 24 24 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 25 25 H 1.09000 * 109.46966 * 299.99721 * 12 10 9 26 26 H 1.09003 * 109.47367 * 59.99799 * 12 10 9 27 27 H 1.09006 * 109.47088 * 180.02562 * 13 12 10 28 28 H 1.09001 * 109.46771 * 299.99445 * 13 12 10 29 29 H 1.09000 * 109.47246 * 59.99758 * 14 13 12 30 30 H 1.09004 * 109.46952 * 179.97438 * 14 13 12 31 31 H 1.09001 * 109.47261 * 300.00166 * 21 10 9 32 32 H 1.09000 * 109.46927 * 60.00354 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0108 11 1 3.5835 -3.1738 -0.8519 12 6 3.6223 -3.3231 1.2968 13 6 4.1318 -4.7658 1.2915 14 6 5.6560 -4.7678 1.1592 15 6 6.0554 -4.0812 -0.1485 16 9 5.4926 -4.7705 -1.2279 17 6 7.5796 -4.0827 -0.2805 18 9 8.0461 -5.4017 -0.2851 19 9 7.9448 -3.4544 -1.4759 20 9 8.1420 -3.3930 0.7990 21 6 5.5459 -2.6380 -0.1429 22 1 -0.4850 0.8400 -0.0004 23 1 3.8713 -0.6783 -0.8962 24 1 3.8786 -0.6819 0.8837 25 1 4.0604 -2.7857 2.1379 26 1 2.5363 -3.3220 1.3909 27 1 3.8469 -5.2552 2.2230 28 1 3.6933 -5.3029 0.4505 29 1 6.0945 -4.2307 2.0003 30 1 6.0191 -5.7957 1.1559 31 1 5.8303 -2.1488 -1.0745 32 1 5.9840 -2.1006 0.6982 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261160851.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:48 Heat of formation + Delta-G solvation = -247.078953 kcal Electronic energy + Delta-G solvation = -20080.799975 eV Core-core repulsion = 16345.884059 eV Total energy + Delta-G solvation = -3734.915916 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -51.39503 -49.26033 -48.79171 -48.56926 -39.28166 -35.30221 -33.42222 -32.37090 -29.35949 -26.95155 -24.85900 -23.34749 -21.98946 -20.81138 -19.53864 -19.45760 -19.12660 -18.83811 -16.95286 -16.74174 -16.19696 -15.66573 -15.58865 -15.54924 -15.22947 -15.21507 -15.05660 -14.92377 -14.90330 -14.72681 -14.11839 -13.71094 -13.45171 -13.32213 -12.92981 -12.59712 -12.47191 -12.29307 -11.98205 -11.72776 -11.65963 -11.26343 -10.97486 -10.94610 -10.70730 -8.24996 -6.27537 1.33409 1.37840 1.38843 1.50126 2.38481 2.39109 2.66475 2.75153 3.10559 3.24577 3.42832 3.57038 4.05931 4.09485 4.16341 4.26089 4.44538 4.55656 4.75688 4.87024 4.88801 4.98036 5.04676 5.21450 5.31843 5.44776 5.54001 5.68419 5.72640 6.33942 6.80081 7.36147 8.91522 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.032961 B = 0.006319 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.284937 B = 4429.904455 C = 4817.195368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.944 3.056 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.242 1.242 7 C -0.518 4.518 8 H 0.037 0.963 9 C -0.007 4.007 10 C -0.065 4.065 11 H 0.051 0.949 12 C -0.109 4.109 13 C -0.111 4.111 14 C -0.136 4.136 15 C 0.088 3.912 16 F -0.186 7.186 17 C 0.441 3.559 18 F -0.175 7.175 19 F -0.181 7.181 20 F -0.165 7.165 21 C -0.138 4.138 22 H 0.264 0.736 23 H 0.014 0.986 24 H 0.027 0.973 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.095 0.905 28 H 0.058 0.942 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.045 -8.770 3.071 19.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.194 4.194 3 Si 0.768 3.232 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.165 1.165 7 C -0.556 4.556 8 H 0.055 0.945 9 C -0.044 4.044 10 C -0.084 4.084 11 H 0.069 0.931 12 C -0.146 4.146 13 C -0.148 4.148 14 C -0.173 4.173 15 C 0.068 3.932 16 F -0.167 7.167 17 C 0.386 3.614 18 F -0.156 7.156 19 F -0.162 7.162 20 F -0.146 7.146 21 C -0.175 4.175 22 H 0.073 0.927 23 H 0.033 0.967 24 H 0.046 0.954 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.113 0.887 28 H 0.077 0.923 29 H 0.131 0.869 30 H 0.119 0.881 31 H 0.100 0.900 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 16.933 -8.688 3.040 19.274 hybrid contribution -0.140 0.781 -0.539 0.960 sum 16.793 -7.907 2.501 18.730 Atomic orbital electron populations 1.70070 1.08266 1.27913 1.53202 1.25972 0.95526 1.03325 0.94552 0.85745 0.79786 0.78698 0.78948 1.19745 1.21308 1.16517 1.21432 0.91846 0.92993 1.49364 0.94509 1.19578 0.94174 0.94024 0.96669 1.20840 0.91958 0.97109 0.98458 0.93093 1.21533 1.00911 0.95329 0.96874 1.21484 0.93147 0.96744 1.03409 1.22253 0.98906 1.02628 0.93556 1.22249 0.86009 0.96565 0.88382 1.92925 1.85478 1.81039 1.57218 1.20956 0.92207 0.74022 0.74193 1.93200 1.90495 1.35789 1.96150 1.93202 1.93214 1.82515 1.47281 1.93208 1.86890 1.79494 1.55034 1.22322 0.97984 0.91762 1.05456 0.92722 0.96728 0.95431 0.91032 0.93149 0.88658 0.92330 0.86915 0.88085 0.90003 0.87313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.40 13.96 21.45 0.30 -59.10 16 2 C 0.00 0.14 5.47 84.65 0.46 0.61 16 3 Si 0.94 43.56 27.46 68.60 1.88 45.45 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 6 H -0.24 -10.14 6.55 99.48 0.65 -9.49 16 7 C -0.52 -28.90 8.96 25.60 0.23 -28.67 16 8 H 0.04 2.26 7.30 -2.91 -0.02 2.24 16 9 C -0.01 -0.32 3.52 29.85 0.10 -0.21 16 10 C -0.07 -2.36 2.02 -10.80 -0.02 -2.38 16 11 H 0.05 2.05 7.80 -2.38 -0.02 2.03 16 12 C -0.11 -3.53 5.01 30.59 0.15 -3.38 16 13 C -0.11 -2.71 5.80 30.59 0.18 -2.53 16 14 C -0.14 -2.81 4.75 30.59 0.15 -2.66 16 15 C 0.09 2.21 0.69 -10.78 -0.01 2.20 16 16 F -0.19 -5.52 15.73 44.97 0.71 -4.81 16 17 C 0.44 10.35 2.44 71.98 0.18 10.52 16 18 F -0.18 -4.02 16.78 44.97 0.75 -3.27 16 19 F -0.18 -4.67 16.78 44.97 0.75 -3.92 16 20 F -0.16 -3.56 16.28 44.97 0.73 -2.83 16 21 C -0.14 -3.91 4.04 30.61 0.12 -3.78 16 22 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 23 H 0.01 0.64 7.56 -2.39 -0.02 0.62 16 24 H 0.03 1.17 7.21 -2.38 -0.02 1.16 16 25 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.05 1.97 6.95 -2.39 -0.02 1.95 16 27 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.06 1.57 7.80 -2.39 -0.02 1.55 16 29 H 0.11 1.91 7.80 -2.39 -0.02 1.89 16 30 H 0.10 1.74 7.80 -2.38 -0.02 1.73 16 31 H 0.08 2.34 7.80 -2.39 -0.02 2.32 16 32 H 0.11 2.68 7.80 -2.39 -0.02 2.66 16 Total: -1.00 -63.16 270.87 7.75 -55.41 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: 1.07 Total: 3.35 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 1.54 Total: -30.28 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.30 Total: -59.10 kcal Atomic # 9 Polarization: -17.77 SS G_CDS: 2.95 Total: -14.82 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.88 Total: 45.45 kcal Total: -63.16 7.75 -55.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261160851.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -191.669 kcal (2) G-P(sol) polarization free energy of solvation -63.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -254.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds