Wall clock time and date at job start Mon Mar 30 2020 06:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00249 * 2 1 4 4 H 1.48501 * 109.47528 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46763 * 299.99633 * 3 2 1 6 6 H 1.48497 * 109.47168 * 59.99344 * 3 2 1 7 7 C 1.37881 * 119.99617 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99724 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00385 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47112 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47140 * 55.00317 * 10 9 7 12 12 C 1.52999 * 109.47592 * 294.99972 * 10 9 7 13 13 C 1.52997 * 109.46991 * 300.00342 * 12 10 9 14 14 C 1.52996 * 109.47131 * 299.99311 * 13 12 10 15 15 C 1.53002 * 109.46972 * 60.00459 * 14 13 12 16 16 F 1.39901 * 109.47061 * 59.99646 * 15 14 13 17 17 C 1.52996 * 109.46972 * 179.97438 * 15 14 13 18 18 F 1.39904 * 109.47143 * 179.97438 * 17 15 14 19 19 F 1.39898 * 109.47323 * 299.99632 * 17 15 14 20 20 F 1.39901 * 109.47517 * 59.99924 * 17 15 14 21 21 C 1.52997 * 109.46817 * 299.99733 * 15 14 13 22 22 H 0.97000 * 120.00438 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46977 * 59.99900 * 9 7 2 24 24 H 1.08994 * 109.47189 * 299.99738 * 9 7 2 25 25 H 1.09002 * 109.46719 * 60.00054 * 12 10 9 26 26 H 1.08993 * 109.47839 * 179.97438 * 12 10 9 27 27 H 1.09001 * 109.47289 * 179.97438 * 13 12 10 28 28 H 1.09000 * 109.47611 * 59.99933 * 13 12 10 29 29 H 1.08996 * 109.47452 * 300.00000 * 14 13 12 30 30 H 1.09000 * 109.47054 * 180.02562 * 14 13 12 31 31 H 1.09001 * 109.47502 * 300.00518 * 21 15 14 32 32 H 1.09001 * 109.47289 * 180.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9293 -3.5552 0.8424 12 6 3.0400 -3.6537 -1.3068 13 6 2.0797 -3.8036 -2.4884 14 6 1.3189 -5.1251 -2.3627 15 6 0.5240 -5.1336 -1.0554 16 9 -0.3850 -4.0702 -1.0555 17 6 -0.2373 -6.4547 -0.9301 18 9 -0.9636 -6.4628 0.2656 19 9 -1.1154 -6.5913 -2.0106 20 9 0.6714 -7.5185 -0.9303 21 6 1.4843 -4.9836 0.1262 22 1 -0.4851 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6240 -2.5568 0.8903 25 1 3.5820 -2.7122 -1.3963 26 1 3.7486 -4.4818 -1.3066 27 1 2.6459 -3.7972 -3.4198 28 1 1.3714 -2.9751 -2.4885 29 1 2.0272 -5.9536 -2.3628 30 1 0.6351 -5.2321 -3.2048 31 1 2.1927 -5.8121 0.1262 32 1 0.9181 -4.9901 1.0576 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261160852.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:51 Heat of formation + Delta-G solvation = -237.382005 kcal Electronic energy + Delta-G solvation = -20555.793366 eV Core-core repulsion = 16821.297942 eV Total energy + Delta-G solvation = -3734.495424 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -51.38007 -49.25489 -48.78026 -48.56036 -39.28774 -35.11043 -33.03093 -32.20355 -28.90597 -26.93936 -25.02777 -23.54729 -22.53764 -20.19608 -19.46782 -19.38341 -19.11773 -18.34665 -17.07944 -16.63791 -16.26744 -15.72442 -15.53548 -15.35019 -15.26275 -15.18182 -14.90940 -14.89269 -14.61713 -14.48587 -14.00426 -13.49284 -13.45357 -13.06591 -12.95270 -12.75141 -12.45224 -12.28328 -11.94151 -11.70615 -11.48545 -10.98477 -10.83849 -10.64425 -10.33334 -8.09553 -6.17501 1.38165 1.40318 1.41399 1.53066 2.41660 2.45550 2.73002 2.81374 3.23621 3.35621 3.48525 3.67240 4.18905 4.20949 4.33136 4.34690 4.49165 4.62598 4.82456 4.90264 4.96319 5.18526 5.25819 5.30593 5.51832 5.59672 5.72398 5.90440 6.09893 6.37607 7.02408 7.49147 9.01855 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.036592 B = 0.006866 C = 0.006488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.005343 B = 4076.966081 C = 4314.307434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.004 4.004 3 Si 0.954 3.046 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.285 1.285 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.011 3.989 10 C -0.079 4.079 11 H 0.067 0.933 12 C -0.102 4.102 13 C -0.115 4.115 14 C -0.132 4.132 15 C 0.081 3.919 16 F -0.184 7.184 17 C 0.440 3.560 18 F -0.183 7.183 19 F -0.178 7.178 20 F -0.161 7.161 21 C -0.133 4.133 22 H 0.258 0.742 23 H 0.039 0.961 24 H -0.030 1.030 25 H 0.057 0.943 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.044 0.956 29 H 0.122 0.878 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.400 -14.227 -4.508 15.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.780 3.220 4 H -0.184 1.184 5 H -0.208 1.208 6 H -0.211 1.211 7 C -0.561 4.561 8 H 0.079 0.921 9 C -0.026 4.026 10 C -0.098 4.098 11 H 0.086 0.914 12 C -0.139 4.139 13 C -0.153 4.153 14 C -0.170 4.170 15 C 0.061 3.939 16 F -0.164 7.164 17 C 0.385 3.615 18 F -0.165 7.165 19 F -0.160 7.160 20 F -0.143 7.143 21 C -0.170 4.170 22 H 0.066 0.934 23 H 0.057 0.943 24 H -0.012 1.012 25 H 0.076 0.924 26 H 0.104 0.896 27 H 0.111 0.889 28 H 0.063 0.937 29 H 0.140 0.860 30 H 0.107 0.893 31 H 0.138 0.862 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.221 -14.126 -4.504 15.416 hybrid contribution -0.563 1.131 0.399 1.325 sum 3.659 -12.995 -4.106 14.111 Atomic orbital electron populations 1.70141 1.07718 1.27006 1.52693 1.25896 0.95566 1.02936 0.95671 0.85562 0.79368 0.79758 0.77333 1.18357 1.20840 1.21143 1.21752 0.93309 0.92302 1.48694 0.92134 1.19570 0.94361 0.92268 0.96394 1.21088 0.97213 0.92628 0.98846 0.91413 1.21467 0.97324 1.02142 0.93003 1.21459 0.98579 0.95526 0.99709 1.22221 1.00055 1.01825 0.92866 1.22385 0.88019 0.79832 1.03647 1.92955 1.69091 1.56501 1.97897 1.21057 0.78581 0.88086 0.73787 1.93192 1.79137 1.96865 1.47274 1.93186 1.70831 1.96440 1.55521 1.93190 1.66281 1.58629 1.96154 1.22263 0.98194 1.01461 0.95113 0.93356 0.94308 1.01191 0.92428 0.89643 0.88856 0.93720 0.86023 0.89290 0.86247 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.89 13.29 21.45 0.28 -57.60 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 3 Si 0.95 44.56 29.54 68.60 2.03 46.58 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 7 C -0.52 -28.90 8.41 25.60 0.22 -28.69 16 8 H 0.06 3.19 7.06 -2.91 -0.02 3.17 16 9 C 0.01 0.55 3.28 29.85 0.10 0.65 16 10 C -0.08 -2.97 2.61 -10.79 -0.03 -3.00 16 11 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 12 C -0.10 -3.21 5.26 30.59 0.16 -3.05 16 13 C -0.12 -3.48 5.59 30.59 0.17 -3.31 16 14 C -0.13 -3.39 4.75 30.59 0.15 -3.24 16 15 C 0.08 2.55 0.68 -10.79 -0.01 2.54 16 16 F -0.18 -7.76 12.84 44.97 0.58 -7.18 16 17 C 0.44 12.47 2.44 71.98 0.18 12.64 16 18 F -0.18 -5.75 16.78 44.97 0.75 -5.00 16 19 F -0.18 -5.14 16.78 44.97 0.75 -4.38 16 20 F -0.16 -3.80 16.28 44.97 0.73 -3.07 16 21 C -0.13 -4.11 4.40 30.60 0.13 -3.97 16 22 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 23 H 0.04 2.11 3.73 -2.39 -0.01 2.10 16 24 H -0.03 -1.78 8.14 -2.39 -0.02 -1.80 16 25 H 0.06 2.04 6.95 -2.39 -0.02 2.03 16 26 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.09 2.25 8.14 -2.39 -0.02 2.24 16 28 H 0.04 1.76 6.13 -2.39 -0.01 1.75 16 29 H 0.12 2.27 7.80 -2.39 -0.02 2.25 16 30 H 0.09 2.13 7.80 -2.39 -0.02 2.11 16 31 H 0.12 2.74 7.80 -2.39 -0.02 2.72 16 32 H 0.07 2.30 7.80 -2.39 -0.02 2.28 16 Total: -1.00 -65.43 265.65 7.79 -57.64 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: 1.14 Total: 2.22 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: 1.53 Total: -29.20 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: 0.28 Total: -57.60 kcal Atomic # 9 Polarization: -22.45 SS G_CDS: 2.82 Total: -19.63 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -65.43 7.79 -57.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261160852.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.745 kcal (2) G-P(sol) polarization free energy of solvation -65.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds