Wall clock time and date at job start Mon Mar 30 2020 06:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.47200 * 239.72287 * 3 2 1 5 5 H 1.48498 * 109.46671 * 359.72211 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.72301 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47151 * 305.00083 * 10 9 7 12 12 C 1.53007 * 109.46991 * 64.99889 * 10 9 7 13 13 C 1.53000 * 109.46947 * 60.00075 * 12 10 9 14 14 C 1.52998 * 109.47198 * 59.99983 * 13 12 10 15 15 C 1.53004 * 109.47413 * 300.00170 * 14 13 12 16 16 F 1.39901 * 109.46528 * 299.99998 * 15 14 13 17 17 C 1.52998 * 109.47413 * 179.97438 * 15 14 13 18 18 F 1.39899 * 109.47024 * 59.99612 * 17 15 14 19 19 F 1.39898 * 109.46948 * 179.97438 * 17 15 14 20 20 F 1.39903 * 109.46838 * 299.99943 * 17 15 14 21 21 C 1.52998 * 109.47211 * 59.99398 * 15 14 13 22 22 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 23 23 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 24 24 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 25 25 H 1.08995 * 109.47091 * 180.02562 * 12 10 9 26 26 H 1.08996 * 109.46891 * 300.00019 * 12 10 9 27 27 H 1.09002 * 109.47159 * 179.97438 * 13 12 10 28 28 H 1.08995 * 109.47231 * 299.99922 * 13 12 10 29 29 H 1.09005 * 109.47168 * 59.99851 * 14 13 12 30 30 H 1.09000 * 109.47193 * 179.97438 * 14 13 12 31 31 H 1.08999 * 109.47474 * 180.02562 * 21 15 14 32 32 H 1.09005 * 109.46823 * 60.00654 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1081 1.6935 -1.2091 5 1 1.2842 2.7464 -0.0068 6 1 3.0979 1.6993 1.2159 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 1 2.9294 -3.5589 -0.8257 12 6 3.0401 -3.6478 1.3240 13 6 2.0797 -3.7926 2.5062 14 6 1.3189 -5.1146 2.3863 15 6 0.5241 -5.1289 1.0789 16 9 -0.3849 -4.0655 1.0743 17 6 -0.2362 -6.4511 0.9587 18 9 -1.1142 -6.5841 2.0398 19 9 -0.9633 -6.4639 -0.2364 20 9 0.6733 -7.5141 0.9632 21 6 1.4844 -4.9840 -0.1033 22 1 -0.4850 0.8401 -0.0041 23 1 0.6241 -2.5528 0.9015 24 1 0.6247 -2.5609 -0.8785 25 1 3.7486 -4.4760 1.3274 26 1 3.5821 -2.7060 1.4093 27 1 2.6460 -3.7829 3.4376 28 1 1.3715 -2.9641 2.5026 29 1 2.0272 -5.9431 2.3899 30 1 0.6351 -5.2179 3.2288 31 1 0.9182 -4.9938 -1.0347 32 1 2.1927 -5.8126 -0.0997 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261160853.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:54 Heat of formation + Delta-G solvation = -221.448334 kcal Electronic energy + Delta-G solvation = -20555.070962 eV Core-core repulsion = 16821.266473 eV Total energy + Delta-G solvation = -3733.804488 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.16809 -47.92745 -47.54536 -47.28530 -37.87409 -33.18337 -31.36889 -30.89932 -27.03125 -25.69448 -23.14000 -22.21380 -21.14569 -18.85855 -18.23273 -18.10091 -17.78171 -16.32591 -15.65070 -15.07633 -14.55627 -14.39887 -14.29011 -14.00399 -13.97313 -13.83130 -13.70390 -13.69637 -13.16549 -12.89807 -12.37262 -12.14934 -11.74527 -11.67118 -11.42346 -10.93799 -10.83727 -10.59368 -10.30892 -10.10349 -10.01623 -9.46026 -9.08487 -8.76644 -8.23073 -5.92533 -3.94139 2.62075 3.34787 3.40232 3.41583 3.64528 3.94913 4.03028 4.49143 4.59991 4.73591 4.89315 5.40983 5.43482 5.46777 5.67128 5.71467 5.73262 5.88457 6.03545 6.16380 6.27214 6.55213 6.73047 6.80491 6.93359 7.17817 7.77737 7.92926 8.11508 8.49005 9.12864 9.68021 11.18047 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.036592 B = 0.006867 C = 0.006489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.006279 B = 4076.643163 C = 4314.005402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.886 3.114 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.517 4.517 8 H 0.052 0.948 9 C 0.007 3.993 10 C -0.082 4.082 11 H 0.069 0.931 12 C -0.106 4.106 13 C -0.117 4.117 14 C -0.138 4.138 15 C 0.094 3.906 16 F -0.153 7.153 17 C 0.430 3.570 18 F -0.179 7.179 19 F -0.175 7.175 20 F -0.177 7.177 21 C -0.137 4.137 22 H 0.259 0.741 23 H 0.053 0.947 24 H 0.013 0.987 25 H 0.043 0.957 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.339 -12.796 3.745 13.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.714 3.286 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.555 4.555 8 H 0.071 0.929 9 C -0.030 4.030 10 C -0.100 4.100 11 H 0.087 0.913 12 C -0.143 4.143 13 C -0.154 4.154 14 C -0.176 4.176 15 C 0.074 3.926 16 F -0.133 7.133 17 C 0.375 3.625 18 F -0.160 7.160 19 F -0.156 7.156 20 F -0.158 7.158 21 C -0.175 4.175 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.031 0.969 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.133 -12.678 3.745 13.391 hybrid contribution 0.109 0.726 -0.132 0.746 sum 2.241 -11.952 3.613 12.686 Atomic orbital electron populations 1.69970 1.05909 1.26423 1.50792 1.24992 0.94756 0.98930 0.95689 0.86765 0.79633 0.83735 0.78459 1.20439 1.21422 1.20383 1.21213 0.92720 0.91122 1.50437 0.92930 1.19683 0.93808 0.90340 0.99154 1.21226 0.98172 0.93401 0.97196 0.91310 1.21495 0.97038 1.01465 0.94309 1.21524 0.99272 0.96048 0.98605 1.22174 0.99664 1.01777 0.93967 1.22031 0.88119 0.80166 1.02248 1.93020 1.67902 1.54632 1.97728 1.21383 0.78639 0.88379 0.74077 1.93183 1.70773 1.96492 1.55546 1.93201 1.78824 1.96833 1.46761 1.93159 1.66868 1.59567 1.96237 1.22304 0.97815 1.01839 0.95522 0.93104 0.92951 0.96890 0.93874 0.90370 0.91788 0.89179 0.89668 0.90245 0.90057 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.02 8.41 -34.44 -0.29 -14.31 16 8 H 0.05 1.38 7.06 -52.49 -0.37 1.01 16 9 C 0.01 0.17 3.27 -27.89 -0.09 0.08 16 10 C -0.08 -1.56 2.61 -90.62 -0.24 -1.80 16 11 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 12 C -0.11 -1.79 5.26 -26.73 -0.14 -1.93 16 13 C -0.12 -1.89 5.59 -26.73 -0.15 -2.04 16 14 C -0.14 -1.98 4.75 -26.73 -0.13 -2.10 16 15 C 0.09 1.55 0.68 -90.62 -0.06 1.49 16 16 F -0.15 -3.13 12.84 2.25 0.03 -3.10 16 17 C 0.43 6.52 2.44 37.16 0.09 6.61 16 18 F -0.18 -2.72 16.78 2.25 0.04 -2.69 16 19 F -0.17 -2.82 16.78 2.25 0.04 -2.78 16 20 F -0.18 -2.41 16.28 2.25 0.04 -2.37 16 21 C -0.14 -2.24 4.40 -26.73 -0.12 -2.36 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.05 1.36 3.73 -51.93 -0.19 1.16 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 1.45 6.95 -51.93 -0.36 1.09 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.09 1.76 6.13 -51.93 -0.32 1.44 16 29 H 0.08 1.03 7.80 -51.93 -0.41 0.62 16 30 H 0.08 1.06 7.80 -51.93 -0.41 0.65 16 31 H 0.08 1.36 7.80 -51.93 -0.41 0.95 16 32 H 0.08 1.08 7.80 -51.93 -0.41 0.67 16 LS Contribution 265.65 15.07 4.00 4.00 Total: -1.00 -29.13 265.65 -5.05 -34.18 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: -3.69 Total: -2.91 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -1.22 Total: -14.83 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.74 Total: -25.92 kcal Atomic # 9 Polarization: -11.08 SS G_CDS: 0.14 Total: -10.94 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.13 -5.05 -34.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261160853.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.269 kcal (2) G-P(sol) polarization free energy of solvation -29.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds