Wall clock time and date at job start Mon Mar 30 2020 06:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99811 * 2 1 4 4 H 1.48505 * 109.47239 * 239.99973 * 3 2 1 5 5 H 1.48499 * 109.47300 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46691 * 120.00604 * 3 2 1 7 7 C 1.37881 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00051 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99711 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.47448 * 60.00358 * 9 7 2 11 11 C 1.52999 * 109.47657 * 300.00280 * 9 7 2 12 12 C 1.52999 * 109.46868 * 300.00278 * 11 9 7 13 13 C 1.52998 * 109.47259 * 299.99458 * 12 11 9 14 14 C 1.53007 * 109.46944 * 60.00379 * 13 12 11 15 15 C 1.52999 * 109.46833 * 299.99882 * 14 13 12 16 16 H 1.09002 * 109.47363 * 300.00041 * 15 14 13 17 17 C 1.52995 * 109.47308 * 180.02562 * 15 14 13 18 18 H 1.08998 * 109.47297 * 306.42924 * 17 15 14 19 19 F 1.39903 * 109.47783 * 186.42729 * 17 15 14 20 20 C 1.53006 * 109.47094 * 66.42665 * 17 15 14 21 21 F 1.39891 * 109.46920 * 55.23345 * 20 17 15 22 22 F 1.39900 * 109.47295 * 175.23695 * 20 17 15 23 23 F 1.39899 * 109.46544 * 295.23561 * 20 17 15 24 24 H 0.96996 * 119.99804 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47214 * 179.97438 * 11 9 7 26 26 H 1.09004 * 109.46717 * 59.99648 * 11 9 7 27 27 H 1.08999 * 109.47246 * 179.97438 * 12 11 9 28 28 H 1.09002 * 109.47363 * 59.99727 * 12 11 9 29 29 H 1.08995 * 109.47046 * 179.97438 * 13 12 11 30 30 H 1.08993 * 109.47116 * 300.00589 * 13 12 11 31 31 H 1.08999 * 109.47343 * 59.99535 * 14 13 12 32 32 H 1.09000 * 109.47306 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 6 0.3719 -2.5805 1.2489 12 6 1.2519 -2.4997 2.4979 13 6 2.2461 -3.6626 2.4974 14 6 3.1254 -3.5813 1.2478 15 6 2.2454 -3.6621 -0.0011 16 1 1.7004 -4.6061 -0.0012 17 6 3.1245 -3.5814 -1.2506 18 1 3.7541 -2.6933 -1.1953 19 9 2.3132 -3.5076 -2.3880 20 6 4.0077 -4.8280 -1.3342 21 9 3.2039 -5.9723 -1.2958 22 9 4.7322 -4.8070 -2.5309 23 9 4.8945 -4.8445 -0.2524 24 1 -0.4850 0.8400 0.0004 25 1 -0.1734 -3.5242 1.2486 26 1 -0.3364 -1.7520 1.2493 27 1 0.6255 -2.5573 3.3881 28 1 1.7969 -1.5557 2.4979 29 1 2.8733 -3.6048 3.3869 30 1 1.7012 -4.6065 2.4973 31 1 3.6703 -2.6373 1.2478 32 1 3.8335 -4.4100 1.2472 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261161376.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:23 Heat of formation + Delta-G solvation = -227.786894 kcal Electronic energy + Delta-G solvation = -20655.201696 eV Core-core repulsion = 16921.122347 eV Total energy + Delta-G solvation = -3734.079349 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.03811 -47.73184 -47.41335 -47.04379 -37.96600 -32.70343 -31.98464 -29.39993 -27.78088 -24.96532 -23.09356 -21.51087 -20.61500 -19.13208 -18.39360 -18.10139 -17.47984 -15.83876 -15.33268 -15.23208 -14.60528 -14.41131 -14.18807 -14.01164 -13.79854 -13.65352 -13.57084 -13.33055 -13.08143 -13.03037 -12.34514 -11.76418 -11.38156 -10.98954 -10.95680 -10.83917 -10.73543 -10.62309 -10.25970 -10.08780 -9.69925 -9.25108 -8.96953 -8.70775 -8.31212 -6.03673 -4.10021 2.83871 3.27642 3.33354 3.35322 3.84604 4.19729 4.22536 4.38255 5.01259 5.25303 5.27089 5.40319 5.68897 5.80443 5.97608 6.20964 6.33761 6.42235 6.53961 6.55884 6.64650 6.79864 6.96042 7.04186 7.41976 7.47177 7.65018 7.84223 8.04856 8.34063 8.89302 9.53737 11.01984 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.023425 B = 0.009165 C = 0.007938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.991842 B = 3054.530634 C = 3526.387502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.068 3.932 3 Si 0.884 3.116 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.057 3.943 10 H 0.036 0.964 11 C -0.107 4.107 12 C -0.106 4.106 13 C -0.107 4.107 14 C -0.121 4.121 15 C -0.104 4.104 16 H 0.067 0.933 17 C 0.074 3.926 18 H 0.131 0.869 19 F -0.178 7.178 20 C 0.423 3.577 21 F -0.179 7.179 22 F -0.184 7.184 23 F -0.171 7.171 24 H 0.261 0.739 25 H 0.015 0.985 26 H 0.093 0.907 27 H 0.032 0.968 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.916 -7.345 0.876 9.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.134 4.134 3 Si 0.712 3.288 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.038 3.962 10 H 0.054 0.946 11 C -0.145 4.145 12 C -0.143 4.143 13 C -0.145 4.145 14 C -0.158 4.158 15 C -0.123 4.123 16 H 0.086 0.914 17 C 0.037 3.963 18 H 0.148 0.852 19 F -0.158 7.158 20 C 0.368 3.632 21 F -0.161 7.161 22 F -0.166 7.166 23 F -0.153 7.153 24 H 0.071 0.929 25 H 0.034 0.966 26 H 0.112 0.888 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.752 -7.243 0.837 9.287 hybrid contribution 0.608 0.695 -0.146 0.935 sum 6.360 -6.548 0.691 9.154 Atomic orbital electron populations 1.69848 1.05856 1.26551 1.50051 1.24882 0.94746 0.98798 0.95008 0.86777 0.79746 0.83621 0.78611 1.20283 1.21330 1.20276 1.21003 0.92426 0.90361 1.51248 0.92722 1.18659 0.91934 0.90277 0.95291 0.94622 1.21499 0.98666 0.99661 0.94676 1.21407 0.97166 0.98430 0.97296 1.21407 0.97723 0.98901 0.96434 1.21787 0.97589 1.02469 0.93970 1.21886 0.97421 1.02621 0.90385 0.91423 1.22899 0.92558 0.94204 0.86646 0.85167 1.92878 1.74388 1.96864 1.51714 1.21696 0.80472 0.87491 0.73529 1.93168 1.73084 1.53764 1.96051 1.93179 1.79406 1.96819 1.47161 1.93107 1.70415 1.96813 1.54940 0.92894 0.96609 0.88824 0.94875 0.91019 0.93360 0.93445 0.90504 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.98 11.32 55.43 0.63 -23.35 16 2 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 3 Si 0.88 20.22 29.54 -169.99 -5.02 15.20 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.51 -12.59 5.95 -34.44 -0.21 -12.79 16 8 H 0.05 1.30 5.70 -52.49 -0.30 1.00 16 9 C 0.06 1.30 1.94 -91.77 -0.18 1.13 16 10 H 0.04 0.93 7.66 -51.93 -0.40 0.53 16 11 C -0.11 -2.39 5.24 -26.73 -0.14 -2.53 16 12 C -0.11 -2.09 5.70 -26.73 -0.15 -2.24 16 13 C -0.11 -1.84 5.92 -26.73 -0.16 -2.00 16 14 C -0.12 -2.12 4.48 -26.73 -0.12 -2.24 16 15 C -0.10 -2.00 1.69 -90.62 -0.15 -2.15 16 16 H 0.07 1.27 7.49 -51.93 -0.39 0.88 16 17 C 0.07 1.35 2.62 -26.73 -0.07 1.28 16 18 H 0.13 2.32 6.85 -51.93 -0.36 1.97 16 19 F -0.18 -3.60 16.24 2.25 0.04 -3.57 16 20 C 0.42 6.87 2.90 37.16 0.11 6.98 16 21 F -0.18 -2.97 16.50 2.25 0.04 -2.93 16 22 F -0.18 -2.97 17.24 2.25 0.04 -2.93 16 23 F -0.17 -2.63 14.18 2.25 0.03 -2.60 16 24 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 25 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 1.56 7.22 -51.93 -0.37 1.18 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.42 6.62 -51.93 -0.34 1.07 16 32 H 0.06 0.93 5.44 -51.93 -0.28 0.65 16 LS Contribution 261.99 15.07 3.95 3.95 Total: -1.00 -25.54 261.99 -5.05 -30.59 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -3.58 Total: -1.44 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -1.16 Total: -12.91 kcal Atomic # 7 Polarization: -23.98 SS G_CDS: 0.63 Total: -23.35 kcal Atomic # 9 Polarization: -12.18 SS G_CDS: 0.14 Total: -12.03 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -25.54 -5.05 -30.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261161376.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.198 kcal (2) G-P(sol) polarization free energy of solvation -25.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds