Wall clock time and date at job start Mon Mar 30 2020 06:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99621 * 2 1 4 4 H 1.48505 * 109.47005 * 90.00054 * 3 2 1 5 5 H 1.48503 * 109.47076 * 209.99591 * 3 2 1 6 6 H 1.48500 * 109.47160 * 330.00151 * 3 2 1 7 7 C 1.37875 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99589 * 185.17989 * 7 2 1 9 9 C 1.50693 * 120.00192 * 5.18846 * 7 2 1 10 10 H 1.08994 * 109.47374 * 34.58026 * 9 7 2 11 11 C 1.53003 * 109.46936 * 274.58363 * 9 7 2 12 12 C 1.53003 * 109.47479 * 179.97438 * 11 9 7 13 13 C 1.53004 * 109.46691 * 59.99627 * 12 11 9 14 14 C 1.52993 * 109.47346 * 299.99976 * 13 12 11 15 15 C 1.52998 * 109.47486 * 154.58187 * 9 7 2 16 16 H 1.09003 * 109.46865 * 59.99829 * 15 9 7 17 17 C 1.53003 * 109.47176 * 300.00028 * 15 9 7 18 18 H 1.09000 * 109.46726 * 294.30695 * 17 15 9 19 19 F 1.39895 * 109.46934 * 54.30486 * 17 15 9 20 20 C 1.52993 * 109.46990 * 174.30657 * 17 15 9 21 21 F 1.39903 * 109.47321 * 65.91817 * 20 17 15 22 22 F 1.39895 * 109.47038 * 185.91446 * 20 17 15 23 23 F 1.39902 * 109.47638 * 305.91620 * 20 17 15 24 24 H 0.97001 * 119.99686 * 175.00713 * 1 2 3 25 25 H 1.09003 * 109.47060 * 299.99954 * 11 9 7 26 26 H 1.08997 * 109.47170 * 59.99617 * 11 9 7 27 27 H 1.08995 * 109.47407 * 179.97438 * 12 11 9 28 28 H 1.09003 * 109.46985 * 300.00059 * 12 11 9 29 29 H 1.09003 * 109.47054 * 60.00474 * 13 12 11 30 30 H 1.09002 * 109.46805 * 180.02562 * 13 12 11 31 31 H 1.09003 * 109.47456 * 179.97438 * 14 13 12 32 32 H 1.09003 * 109.47451 * 300.00255 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4464 2.6527 -0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0813 -1.1958 0.0850 9 6 1.2558 -2.4965 -0.1169 10 1 0.3897 -2.3606 -0.7645 11 6 0.7902 -2.9439 1.2702 12 6 0.0294 -4.2660 1.1510 13 6 0.9500 -5.3320 0.5536 14 6 1.4155 -4.8847 -0.8335 15 6 2.1768 -3.5623 -0.7141 16 1 3.0430 -3.6982 -0.0664 17 6 2.6425 -3.1149 -2.1011 18 1 1.7877 -3.0765 -2.7764 19 9 3.2230 -1.8452 -2.0111 20 6 3.6729 -4.1099 -2.6387 21 9 3.0571 -5.3471 -2.8562 22 9 4.1978 -3.6320 -3.8441 23 9 4.7059 -4.2605 -1.7073 24 1 -0.4850 -0.8369 -0.0731 25 1 1.6563 -3.0798 1.9179 26 1 0.1340 -2.1846 1.6956 27 1 -0.3019 -4.5849 2.1392 28 1 -0.8368 -4.1296 0.5035 29 1 1.8162 -5.4684 1.2011 30 1 0.4079 -6.2738 0.4682 31 1 2.0718 -5.6439 -1.2589 32 1 0.5494 -4.7483 -1.4810 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261161378.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:25 Heat of formation + Delta-G solvation = -229.436494 kcal Electronic energy + Delta-G solvation = -20664.466398 eV Core-core repulsion = 16930.315517 eV Total energy + Delta-G solvation = -3734.150881 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.04954 -47.69361 -47.41124 -46.87734 -38.05342 -33.10792 -32.17044 -29.47339 -27.90413 -24.38597 -23.15655 -21.48025 -20.85020 -19.36998 -18.44448 -18.22525 -17.49927 -16.82587 -15.34239 -14.83484 -14.51001 -14.19947 -14.06654 -13.91679 -13.77971 -13.66242 -13.58951 -13.46233 -13.39259 -13.28596 -12.58322 -11.81402 -11.37262 -11.28515 -10.91609 -10.83625 -10.69272 -10.40993 -10.24606 -10.08300 -10.02338 -9.66733 -9.16118 -8.46969 -8.16007 -6.29822 -3.96606 2.82236 3.47380 3.52791 3.68084 3.83824 4.16015 4.22208 4.57915 4.91798 5.13457 5.23683 5.34597 5.43092 5.64265 5.73047 5.93592 6.07505 6.11558 6.17734 6.25954 6.40332 6.47754 6.66379 6.68963 6.88703 7.05710 7.36415 7.50677 8.20779 8.51891 8.92627 9.69566 11.09616 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.019620 B = 0.010763 C = 0.007576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.801682 B = 2600.875977 C = 3694.923889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.021 3.979 3 Si 1.063 2.937 4 H -0.290 1.290 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.580 4.580 8 H 0.055 0.945 9 C 0.043 3.957 10 H 0.033 0.967 11 C -0.106 4.106 12 C -0.124 4.124 13 C -0.109 4.109 14 C -0.132 4.132 15 C -0.103 4.103 16 H 0.081 0.919 17 C 0.080 3.920 18 H 0.112 0.888 19 F -0.152 7.152 20 C 0.422 3.578 21 F -0.176 7.176 22 F -0.183 7.183 23 F -0.177 7.177 24 H 0.268 0.732 25 H 0.046 0.954 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.568 -9.740 -3.343 10.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.182 4.182 3 Si 0.893 3.107 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.619 4.619 8 H 0.073 0.927 9 C 0.024 3.976 10 H 0.051 0.949 11 C -0.144 4.144 12 C -0.162 4.162 13 C -0.146 4.146 14 C -0.169 4.169 15 C -0.122 4.122 16 H 0.099 0.901 17 C 0.042 3.958 18 H 0.130 0.870 19 F -0.132 7.132 20 C 0.367 3.633 21 F -0.157 7.157 22 F -0.165 7.165 23 F -0.158 7.158 24 H 0.080 0.920 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.421 -8.071 -3.297 9.366 hybrid contribution 0.472 -1.772 -0.194 1.844 sum 3.893 -9.843 -3.491 11.146 Atomic orbital electron populations 1.70790 1.06833 1.30913 1.46959 1.25649 0.96396 1.02347 0.93805 0.83619 0.75050 0.75457 0.76619 1.21727 1.21269 1.21230 1.21985 0.94815 0.91059 1.53994 0.92673 1.18830 0.94097 0.92317 0.92336 0.94858 1.21700 0.98552 0.94060 1.00088 1.21676 0.98396 0.96805 0.99297 1.21416 0.99313 0.97760 0.96155 1.21942 1.00284 0.96730 0.97991 1.21874 1.01137 0.96806 0.92388 0.90098 1.22569 0.92053 0.79071 1.02063 0.87019 1.93038 1.85008 1.37906 1.97221 1.21757 0.83255 0.82258 0.76031 1.93093 1.82473 1.45579 1.94598 1.93179 1.88069 1.87998 1.47209 1.93179 1.61220 1.95945 1.65459 0.92032 0.93539 0.92315 0.93470 0.92748 0.92426 0.92862 0.91330 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.68 13.63 55.43 0.76 -25.93 16 2 C 0.02 0.59 5.45 -17.82 -0.10 0.50 16 3 Si 1.06 25.28 29.91 -169.99 -5.08 20.20 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.58 -15.25 6.05 -34.44 -0.21 -15.46 16 8 H 0.05 1.50 7.05 -52.48 -0.37 1.13 16 9 C 0.04 0.97 1.27 -91.77 -0.12 0.86 16 10 H 0.03 0.82 6.90 -51.93 -0.36 0.46 16 11 C -0.11 -2.24 5.11 -26.73 -0.14 -2.37 16 12 C -0.12 -2.13 5.92 -26.73 -0.16 -2.29 16 13 C -0.11 -1.66 5.92 -26.73 -0.16 -1.82 16 14 C -0.13 -2.10 4.68 -26.71 -0.13 -2.23 16 15 C -0.10 -1.96 1.55 -90.59 -0.14 -2.10 16 16 H 0.08 1.60 7.49 -51.93 -0.39 1.21 16 17 C 0.08 1.48 3.00 -26.73 -0.08 1.40 16 18 H 0.11 1.88 8.14 -51.93 -0.42 1.46 16 19 F -0.15 -3.36 13.76 2.25 0.03 -3.33 16 20 C 0.42 6.93 2.89 37.15 0.11 7.04 16 21 F -0.18 -2.62 14.23 2.25 0.03 -2.59 16 22 F -0.18 -3.02 17.22 2.25 0.04 -2.98 16 23 F -0.18 -3.04 16.47 2.25 0.04 -3.00 16 24 H 0.27 7.67 6.40 -40.82 -0.26 7.41 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 1.38 7.84 -51.93 -0.41 0.97 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.01 5.49 -51.93 -0.28 0.72 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 266.53 15.07 4.02 4.02 Total: -1.00 -27.90 266.53 -5.11 -33.02 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -3.82 Total: -2.94 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -1.11 Total: -16.47 kcal Atomic # 7 Polarization: -26.68 SS G_CDS: 0.76 Total: -25.93 kcal Atomic # 9 Polarization: -12.04 SS G_CDS: 0.14 Total: -11.90 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -5.08 Total: 20.20 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.90 -5.11 -33.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261161378.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.421 kcal (2) G-P(sol) polarization free energy of solvation -27.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds