Wall clock time and date at job start Mon Mar 30 2020 06:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99621 * 2 1 4 4 H 1.48505 * 109.47005 * 90.00054 * 3 2 1 5 5 H 1.48503 * 109.47076 * 209.99591 * 3 2 1 6 6 H 1.48500 * 109.47160 * 330.00151 * 3 2 1 7 7 C 1.37875 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99589 * 185.17989 * 7 2 1 9 9 C 1.50693 * 120.00192 * 5.18846 * 7 2 1 10 10 H 1.08994 * 109.47374 * 34.58026 * 9 7 2 11 11 C 1.53003 * 109.46936 * 274.58363 * 9 7 2 12 12 C 1.53003 * 109.47479 * 179.97438 * 11 9 7 13 13 C 1.53004 * 109.46691 * 59.99627 * 12 11 9 14 14 C 1.52993 * 109.47346 * 299.99976 * 13 12 11 15 15 C 1.52998 * 109.47486 * 154.58187 * 9 7 2 16 16 H 1.09003 * 109.46865 * 59.99829 * 15 9 7 17 17 C 1.53003 * 109.47176 * 300.00028 * 15 9 7 18 18 H 1.09000 * 109.46726 * 294.30695 * 17 15 9 19 19 F 1.39895 * 109.46934 * 54.30486 * 17 15 9 20 20 C 1.52993 * 109.46990 * 174.30657 * 17 15 9 21 21 F 1.39903 * 109.47321 * 65.91817 * 20 17 15 22 22 F 1.39895 * 109.47038 * 185.91446 * 20 17 15 23 23 F 1.39902 * 109.47638 * 305.91620 * 20 17 15 24 24 H 0.97001 * 119.99686 * 175.00713 * 1 2 3 25 25 H 1.09003 * 109.47060 * 299.99954 * 11 9 7 26 26 H 1.08997 * 109.47170 * 59.99617 * 11 9 7 27 27 H 1.08995 * 109.47407 * 179.97438 * 12 11 9 28 28 H 1.09003 * 109.46985 * 300.00059 * 12 11 9 29 29 H 1.09003 * 109.47054 * 60.00474 * 13 12 11 30 30 H 1.09002 * 109.46805 * 180.02562 * 13 12 11 31 31 H 1.09003 * 109.47456 * 179.97438 * 14 13 12 32 32 H 1.09003 * 109.47451 * 300.00255 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4464 2.6527 -0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0813 -1.1958 0.0850 9 6 1.2558 -2.4965 -0.1169 10 1 0.3897 -2.3606 -0.7645 11 6 0.7902 -2.9439 1.2702 12 6 0.0294 -4.2660 1.1510 13 6 0.9500 -5.3320 0.5536 14 6 1.4155 -4.8847 -0.8335 15 6 2.1768 -3.5623 -0.7141 16 1 3.0430 -3.6982 -0.0664 17 6 2.6425 -3.1149 -2.1011 18 1 1.7877 -3.0765 -2.7764 19 9 3.2230 -1.8452 -2.0111 20 6 3.6729 -4.1099 -2.6387 21 9 3.0571 -5.3471 -2.8562 22 9 4.1978 -3.6320 -3.8441 23 9 4.7059 -4.2605 -1.7073 24 1 -0.4850 -0.8369 -0.0731 25 1 1.6563 -3.0798 1.9179 26 1 0.1340 -2.1846 1.6956 27 1 -0.3019 -4.5849 2.1392 28 1 -0.8368 -4.1296 0.5035 29 1 1.8162 -5.4684 1.2011 30 1 0.4079 -6.2738 0.4682 31 1 2.0718 -5.6439 -1.2589 32 1 0.5494 -4.7483 -1.4810 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261161378.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:25 Heat of formation + Delta-G solvation = -243.409155 kcal Electronic energy + Delta-G solvation = -20665.072298 eV Core-core repulsion = 16930.315517 eV Total energy + Delta-G solvation = -3734.756781 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -51.38408 -49.07641 -48.76064 -48.41205 -39.60428 -35.04267 -33.64191 -31.16537 -29.37738 -26.29499 -24.59460 -23.10462 -22.34242 -20.86222 -19.81133 -19.64084 -18.97265 -18.68705 -16.86446 -16.36763 -15.88399 -15.75918 -15.55441 -15.51412 -15.36652 -15.16624 -14.99585 -14.91170 -14.81038 -14.73270 -14.11752 -13.52236 -13.01138 -12.94960 -12.56789 -12.46602 -12.29091 -11.96959 -11.89976 -11.76308 -11.57312 -11.31091 -10.79266 -10.47320 -10.13519 -8.46909 -6.11811 1.43200 1.53529 1.61407 1.78749 2.45643 2.61520 2.77809 2.87693 3.30110 3.51530 3.69439 3.85214 3.99312 4.24604 4.33426 4.47370 4.58398 4.64558 4.78400 4.84280 4.93237 5.09545 5.26143 5.26890 5.33578 5.43329 5.62794 5.72358 6.20763 6.37311 6.79210 7.58911 8.93658 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.019620 B = 0.010763 C = 0.007576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.801682 B = 2600.875977 C = 3694.923889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.028 4.028 3 Si 1.098 2.902 4 H -0.279 1.279 5 H -0.278 1.278 6 H -0.287 1.287 7 C -0.576 4.576 8 H 0.042 0.958 9 C 0.039 3.961 10 H 0.012 0.988 11 C -0.101 4.101 12 C -0.118 4.118 13 C -0.106 4.106 14 C -0.127 4.127 15 C -0.098 4.098 16 H 0.072 0.928 17 C 0.069 3.931 18 H 0.127 0.873 19 F -0.177 7.177 20 C 0.437 3.563 21 F -0.161 7.161 22 F -0.181 7.181 23 F -0.180 7.180 24 H 0.260 0.740 25 H 0.041 0.959 26 H 0.024 0.976 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.016 -11.533 -3.633 12.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.226 4.226 3 Si 0.923 3.077 4 H -0.205 1.205 5 H -0.203 1.203 6 H -0.213 1.213 7 C -0.614 4.614 8 H 0.060 0.940 9 C 0.021 3.979 10 H 0.030 0.970 11 C -0.139 4.139 12 C -0.155 4.155 13 C -0.143 4.143 14 C -0.165 4.165 15 C -0.117 4.117 16 H 0.091 0.909 17 C 0.031 3.969 18 H 0.145 0.855 19 F -0.158 7.158 20 C 0.383 3.617 21 F -0.142 7.142 22 F -0.163 7.163 23 F -0.161 7.161 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.043 0.957 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.881 -9.883 -3.583 11.205 hybrid contribution 0.349 -1.249 -0.105 1.301 sum 4.229 -11.132 -3.688 12.466 Atomic orbital electron populations 1.70882 1.07603 1.30447 1.49679 1.26707 0.96550 1.05422 0.93901 0.83148 0.74452 0.72836 0.77233 1.20545 1.20310 1.21325 1.22260 0.94309 0.92775 1.52061 0.93955 1.18778 0.93712 0.92314 0.93119 0.97005 1.21532 0.98173 0.95644 0.98542 1.21599 0.98202 0.95018 1.00702 1.21430 0.99315 0.98195 0.95349 1.21952 1.00467 0.95047 0.98994 1.21744 1.00281 0.97369 0.92280 0.90934 1.22793 0.93269 0.78433 1.02401 0.85502 1.92972 1.85497 1.39945 1.97355 1.21186 0.82544 0.82142 0.75860 1.93121 1.82188 1.44445 1.94479 1.93188 1.87969 1.88100 1.47005 1.93180 1.61314 1.95948 1.65677 0.92973 0.94010 0.95716 0.91605 0.92915 0.92008 0.89577 0.89319 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.42 13.63 21.45 0.29 -56.13 16 2 C -0.03 -1.58 5.45 84.65 0.46 -1.12 16 3 Si 1.10 51.50 29.91 68.60 2.05 53.55 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 7 C -0.58 -30.73 6.05 25.60 0.15 -30.58 16 8 H 0.04 2.33 7.05 -2.91 -0.02 2.31 16 9 C 0.04 1.80 1.27 -11.54 -0.01 1.79 16 10 H 0.01 0.59 6.90 -2.39 -0.02 0.57 16 11 C -0.10 -4.26 5.11 30.60 0.16 -4.11 16 12 C -0.12 -3.80 5.92 30.60 0.18 -3.62 16 13 C -0.11 -2.84 5.92 30.59 0.18 -2.66 16 14 C -0.13 -3.66 4.68 30.61 0.14 -3.52 16 15 C -0.10 -3.60 1.55 -10.78 -0.02 -3.61 16 16 H 0.07 2.79 7.49 -2.39 -0.02 2.77 16 17 C 0.07 2.45 3.00 30.59 0.09 2.54 16 18 H 0.13 4.10 8.14 -2.39 -0.02 4.08 16 19 F -0.18 -7.83 13.76 44.97 0.62 -7.22 16 20 C 0.44 13.42 2.89 71.98 0.21 13.62 16 21 F -0.16 -4.25 14.23 44.97 0.64 -3.61 16 22 F -0.18 -5.62 17.22 44.97 0.77 -4.84 16 23 F -0.18 -5.83 16.47 44.97 0.74 -5.09 16 24 H 0.26 15.37 6.40 -92.71 -0.59 14.78 16 25 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.02 1.18 7.84 -2.39 -0.02 1.16 16 27 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.09 2.24 5.49 -2.39 -0.01 2.22 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -60.29 266.53 7.97 -52.32 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: 1.31 Total: 2.28 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: 1.55 Total: -31.27 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.29 Total: -56.13 kcal Atomic # 9 Polarization: -23.53 SS G_CDS: 2.77 Total: -20.76 kcal Atomic # 14 Polarization: 51.50 SS G_CDS: 2.05 Total: 53.55 kcal Total: -60.29 7.97 -52.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261161378.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -191.087 kcal (2) G-P(sol) polarization free energy of solvation -60.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds