Wall clock time and date at job start Mon Mar 30 2020 06:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38262 * 119.95580 * 2 1 4 4 C 1.38258 * 120.13176 * 180.02562 * 3 2 1 5 5 C 1.38336 * 120.02744 * 0.02562 * 4 3 2 6 6 F 1.35097 * 120.04581 * 179.97438 * 5 4 3 7 7 C 1.38907 * 119.90405 * 359.97438 * 5 4 3 8 8 O 1.35958 * 120.06231 * 179.97438 * 7 5 4 9 9 C 1.42903 * 116.99807 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.46726 * 180.02562 * 9 8 7 11 11 O 1.42899 * 109.47405 * 64.99720 * 10 9 8 12 12 C 1.42901 * 113.99649 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46545 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00589 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99844 * 180.02562 * 13 12 11 16 16 N 1.31502 * 119.99832 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99825 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.46818 * 90.00144 * 17 15 13 19 19 H 1.48498 * 109.47067 * 209.99968 * 17 15 13 20 20 H 1.48496 * 109.47458 * 330.00345 * 17 15 13 21 21 C 1.38183 * 119.95457 * 180.25564 * 2 1 3 22 22 H 1.08999 * 109.47317 * 89.99620 * 1 2 3 23 23 H 1.09000 * 109.46936 * 209.99996 * 1 2 3 24 24 H 1.09004 * 109.47001 * 329.99547 * 1 2 3 25 25 H 1.08002 * 119.93325 * 359.97438 * 3 2 1 26 26 H 1.07997 * 119.98421 * 180.02562 * 4 3 2 27 27 H 1.09002 * 109.47382 * 59.99931 * 9 8 7 28 28 H 1.09001 * 109.46938 * 299.99917 * 9 8 7 29 29 H 1.09002 * 109.46642 * 184.99995 * 10 9 8 30 30 H 1.09002 * 109.47069 * 304.99524 * 10 9 8 31 31 H 1.08990 * 109.47463 * 299.99806 * 12 11 10 32 32 H 1.08992 * 109.47069 * 60.00902 * 12 11 10 33 33 H 0.97004 * 120.00403 * 179.97438 * 16 15 13 34 34 H 1.08000 * 120.01315 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1979 0.0000 4 6 3.5799 1.2022 -0.0005 5 6 4.2758 0.0066 -0.0016 6 9 5.6268 0.0103 -0.0027 7 6 3.5835 -1.1977 -0.0016 8 8 4.2643 -2.3746 -0.0032 9 6 3.4869 -3.5736 -0.0037 10 6 4.4199 -4.7862 -0.0048 11 8 5.1622 -4.8174 1.2159 12 6 6.0682 -5.9177 1.3171 13 6 6.7940 -5.8509 2.6362 14 1 6.5840 -5.0487 3.3281 15 6 7.7262 -6.8140 2.9597 16 7 7.9822 -7.7905 2.1171 17 14 8.6252 -6.7316 4.5951 18 1 7.8581 -7.4840 5.6201 19 1 9.9757 -7.3314 4.4483 20 1 8.7565 -5.3138 5.0170 21 6 2.1969 -1.1972 -0.0053 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.6555 2.1322 -0.0004 26 1 4.1167 2.1392 -0.0001 27 1 2.8573 -3.5982 -0.8932 28 1 2.8588 -3.5997 0.8868 29 1 3.8299 -5.6984 -0.0947 30 1 5.1082 -4.7142 -0.8469 31 1 5.5123 -6.8531 1.2549 32 1 6.7908 -5.8695 0.5026 33 1 8.6383 -8.4679 2.3444 34 1 1.6564 -2.1322 -0.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292750142.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:34 Heat of formation + Delta-G solvation = -115.425422 kcal Electronic energy + Delta-G solvation = -17933.607332 eV Core-core repulsion = 14746.257082 eV Total energy + Delta-G solvation = -3187.350250 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.62734 -40.06735 -37.88411 -36.47862 -32.80810 -32.49644 -30.72741 -29.49014 -27.08678 -26.60302 -23.66351 -22.33953 -21.74742 -21.45848 -18.14228 -17.08045 -16.77542 -16.37011 -16.33375 -15.49410 -14.93369 -14.66708 -14.41393 -14.29464 -14.18393 -13.95653 -13.75594 -13.30749 -12.88304 -12.15937 -12.03021 -12.01038 -11.64104 -11.55039 -11.13076 -11.01856 -10.82283 -10.73579 -10.54722 -10.03663 -9.11472 -8.92908 -8.86465 -8.20040 -8.12533 -6.10212 -4.11690 1.00842 1.19776 3.16621 3.31983 3.36786 3.43321 3.44682 4.25269 4.33644 4.52509 4.59471 4.71708 4.91960 5.02877 5.09886 5.26461 5.29922 5.34169 5.36109 5.46597 5.59353 5.79452 5.86362 5.89956 5.98286 6.07686 6.09624 6.32921 6.62521 7.06031 7.39262 7.41660 7.80186 8.14074 8.53875 9.00934 9.53014 11.01442 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.030144 B = 0.004007 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.660493 B = 6985.921007 C = 7372.415056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.059 4.059 3 C -0.139 4.139 4 C -0.113 4.113 5 C 0.060 3.940 6 F -0.130 7.130 7 C 0.112 3.888 8 O -0.290 6.290 9 C 0.064 3.936 10 C 0.062 3.938 11 O -0.390 6.390 12 C 0.194 3.806 13 C -0.515 4.515 14 H 0.067 0.933 15 C 0.056 3.944 16 N -0.899 5.899 17 Si 0.909 3.091 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.271 1.271 21 C -0.189 4.189 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.131 0.869 26 H 0.140 0.860 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.006 0.994 32 H 0.007 0.993 33 H 0.264 0.736 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.151 15.339 -6.811 22.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.059 4.059 3 C -0.158 4.158 4 C -0.132 4.132 5 C 0.040 3.960 6 F -0.109 7.109 7 C 0.065 3.935 8 O -0.203 6.203 9 C -0.011 4.011 10 C -0.015 4.015 11 O -0.310 6.310 12 C 0.120 3.880 13 C -0.553 4.553 14 H 0.085 0.915 15 C -0.145 4.145 16 N -0.539 5.539 17 Si 0.736 3.264 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.208 4.208 22 H 0.091 0.909 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.148 0.852 26 H 0.158 0.842 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.024 0.976 32 H 0.025 0.975 33 H 0.074 0.926 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.783 15.252 -6.682 22.267 hybrid contribution 0.645 -0.438 0.557 0.958 sum -14.138 14.814 -6.125 21.374 Atomic orbital electron populations 1.20799 0.90644 1.03092 1.02517 1.19740 0.96313 0.92317 0.97551 1.20727 0.92920 0.97864 1.04261 1.20972 0.94826 0.96272 1.01132 1.17041 0.77442 0.91884 1.09625 1.91525 1.27994 1.97184 1.94199 1.19141 0.91021 0.86182 0.97163 1.86323 1.34996 1.11601 1.87366 1.23040 0.94321 0.82363 1.01369 1.22277 0.94620 0.93940 0.90691 1.87931 1.56710 1.51627 1.34697 1.20239 0.86899 0.83235 0.97612 1.21060 1.21360 1.10865 1.02017 0.91496 1.24945 0.96662 0.94976 0.97885 1.69957 1.34298 1.13687 1.35919 0.86322 0.78712 0.78495 0.82909 1.20451 1.21034 1.19559 1.21062 0.91868 0.99476 1.08390 0.90892 0.91291 0.91232 0.85151 0.84236 0.91127 0.91078 0.91975 0.93181 0.97607 0.97477 0.92639 0.84506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.00 0.36 -0.42 16 2 C -0.06 -0.59 5.88 -104.64 -0.62 -1.21 16 3 C -0.14 -1.35 9.69 -39.57 -0.38 -1.73 16 4 C -0.11 -1.29 10.02 -39.54 -0.40 -1.68 16 5 C 0.06 0.90 7.31 -39.30 -0.29 0.62 16 6 F -0.13 -2.27 17.11 2.25 0.04 -2.23 16 7 C 0.11 1.73 6.69 -39.18 -0.26 1.47 16 8 O -0.29 -5.27 9.97 -24.46 -0.24 -5.52 16 9 C 0.06 0.97 5.12 37.16 0.19 1.16 16 10 C 0.06 1.16 6.32 37.16 0.23 1.40 16 11 O -0.39 -9.78 10.29 -40.09 -0.41 -10.19 16 12 C 0.19 5.46 5.69 36.01 0.20 5.67 16 13 C -0.51 -15.61 9.43 -34.44 -0.32 -15.93 16 14 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.90 -27.29 13.28 55.43 0.74 -26.55 16 17 Si 0.91 22.30 29.54 -169.99 -5.02 17.28 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.19 -2.28 8.69 -39.44 -0.34 -2.62 16 22 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 24 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 25 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 26 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 27 H 0.07 0.80 7.65 -51.93 -0.40 0.41 16 28 H 0.07 1.02 7.67 -51.93 -0.40 0.63 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.14 1.39 6.30 -52.49 -0.33 1.06 16 LS Contribution 302.58 15.07 4.56 4.56 Total: -1.00 -33.91 302.58 -6.53 -40.44 By element: Atomic # 1 Polarization: -1.61 SS G_CDS: -4.47 Total: -6.08 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -1.72 Total: -11.71 kcal Atomic # 7 Polarization: -27.29 SS G_CDS: 0.74 Total: -26.55 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.66 Total: -15.71 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.91 -6.53 -40.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292750142.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.982 kcal (2) G-P(sol) polarization free energy of solvation -33.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds