Wall clock time and date at job start Mon Mar 30 2020 06:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38262 * 119.95580 * 2 1 4 4 C 1.38258 * 120.13176 * 180.02562 * 3 2 1 5 5 C 1.38336 * 120.02744 * 0.02562 * 4 3 2 6 6 F 1.35097 * 120.04581 * 179.97438 * 5 4 3 7 7 C 1.38907 * 119.90405 * 359.97438 * 5 4 3 8 8 O 1.35958 * 120.06231 * 179.97438 * 7 5 4 9 9 C 1.42903 * 116.99807 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.46726 * 180.02562 * 9 8 7 11 11 O 1.42899 * 109.47405 * 64.99720 * 10 9 8 12 12 C 1.42901 * 113.99649 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46545 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00589 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99844 * 180.02562 * 13 12 11 16 16 N 1.31502 * 119.99832 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99825 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.46818 * 90.00144 * 17 15 13 19 19 H 1.48498 * 109.47067 * 209.99968 * 17 15 13 20 20 H 1.48496 * 109.47458 * 330.00345 * 17 15 13 21 21 C 1.38183 * 119.95457 * 180.25564 * 2 1 3 22 22 H 1.08999 * 109.47317 * 89.99620 * 1 2 3 23 23 H 1.09000 * 109.46936 * 209.99996 * 1 2 3 24 24 H 1.09004 * 109.47001 * 329.99547 * 1 2 3 25 25 H 1.08002 * 119.93325 * 359.97438 * 3 2 1 26 26 H 1.07997 * 119.98421 * 180.02562 * 4 3 2 27 27 H 1.09002 * 109.47382 * 59.99931 * 9 8 7 28 28 H 1.09001 * 109.46938 * 299.99917 * 9 8 7 29 29 H 1.09002 * 109.46642 * 184.99995 * 10 9 8 30 30 H 1.09002 * 109.47069 * 304.99524 * 10 9 8 31 31 H 1.08990 * 109.47463 * 299.99806 * 12 11 10 32 32 H 1.08992 * 109.47069 * 60.00902 * 12 11 10 33 33 H 0.97004 * 120.00403 * 179.97438 * 16 15 13 34 34 H 1.08000 * 120.01315 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1979 0.0000 4 6 3.5799 1.2022 -0.0005 5 6 4.2758 0.0066 -0.0016 6 9 5.6268 0.0103 -0.0027 7 6 3.5835 -1.1977 -0.0016 8 8 4.2643 -2.3746 -0.0032 9 6 3.4869 -3.5736 -0.0037 10 6 4.4199 -4.7862 -0.0048 11 8 5.1622 -4.8174 1.2159 12 6 6.0682 -5.9177 1.3171 13 6 6.7940 -5.8509 2.6362 14 1 6.5840 -5.0487 3.3281 15 6 7.7262 -6.8140 2.9597 16 7 7.9822 -7.7905 2.1171 17 14 8.6252 -6.7316 4.5951 18 1 7.8581 -7.4840 5.6201 19 1 9.9757 -7.3314 4.4483 20 1 8.7565 -5.3138 5.0170 21 6 2.1969 -1.1972 -0.0053 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.6555 2.1322 -0.0004 26 1 4.1167 2.1392 -0.0001 27 1 2.8573 -3.5982 -0.8932 28 1 2.8588 -3.5997 0.8868 29 1 3.8299 -5.6984 -0.0947 30 1 5.1082 -4.7142 -0.8469 31 1 5.5123 -6.8531 1.2549 32 1 6.7908 -5.8695 0.5026 33 1 8.6383 -8.4679 2.3444 34 1 1.6564 -2.1322 -0.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292750142.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:33 Heat of formation + Delta-G solvation = -137.245395 kcal Electronic energy + Delta-G solvation = -17934.553517 eV Core-core repulsion = 14746.257082 eV Total energy + Delta-G solvation = -3188.296435 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.81268 -41.11484 -39.08834 -38.18423 -34.99873 -33.36005 -31.96773 -30.70375 -29.07127 -27.49728 -24.90639 -24.45112 -22.82952 -22.50462 -19.23909 -18.73891 -18.09682 -17.83870 -17.73739 -16.99236 -16.53359 -16.32907 -15.76929 -15.55764 -15.42848 -15.19946 -14.55086 -14.39576 -14.15382 -13.74090 -13.42128 -13.12300 -12.85081 -12.78294 -12.68396 -12.61459 -12.35422 -12.10186 -11.91848 -11.82279 -11.33236 -10.93393 -10.31851 -9.82525 -9.13845 -8.36111 -6.48824 0.09887 0.27167 1.37172 1.40529 1.52791 2.07005 2.32009 2.55319 2.97508 3.04483 3.27933 3.68065 3.80681 3.98068 4.06679 4.13804 4.24316 4.35108 4.40682 4.54831 4.64378 4.77036 4.79932 4.89575 4.92537 5.03897 5.12216 5.20558 5.30524 5.49994 5.52187 5.75869 5.90807 6.31778 6.47153 6.75333 7.22947 8.76308 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.030144 B = 0.004007 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.660493 B = 6985.921007 C = 7372.415056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.053 4.053 3 C -0.129 4.129 4 C -0.108 4.108 5 C 0.015 3.985 6 F -0.157 7.157 7 C 0.080 3.920 8 O -0.333 6.333 9 C 0.069 3.931 10 C 0.049 3.951 11 O -0.412 6.412 12 C 0.208 3.792 13 C -0.554 4.554 14 H 0.057 0.943 15 C 0.008 3.992 16 N -0.928 5.928 17 Si 0.984 3.016 18 H -0.263 1.263 19 H -0.271 1.271 20 H -0.269 1.269 21 C -0.192 4.192 22 H 0.088 0.912 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.169 0.831 26 H 0.161 0.839 27 H 0.115 0.885 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.045 0.955 31 H -0.004 1.004 32 H -0.016 1.016 33 H 0.272 0.728 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.247 16.611 -6.255 24.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.054 4.054 3 C -0.147 4.147 4 C -0.127 4.127 5 C -0.005 4.005 6 F -0.136 7.136 7 C 0.034 3.966 8 O -0.248 6.248 9 C -0.005 4.005 10 C -0.027 4.027 11 O -0.332 6.332 12 C 0.133 3.867 13 C -0.592 4.592 14 H 0.075 0.925 15 C -0.190 4.190 16 N -0.568 5.568 17 Si 0.806 3.194 18 H -0.188 1.188 19 H -0.196 1.196 20 H -0.193 1.193 21 C -0.210 4.210 22 H 0.107 0.893 23 H 0.092 0.908 24 H 0.106 0.894 25 H 0.187 0.813 26 H 0.179 0.821 27 H 0.132 0.868 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.014 0.986 32 H 0.002 0.998 33 H 0.081 0.919 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -16.908 16.533 -6.147 24.433 hybrid contribution 1.161 -0.750 0.289 1.412 sum -15.746 15.783 -5.857 23.051 Atomic orbital electron populations 1.20897 0.87808 1.04350 1.03860 1.20236 0.98272 0.91607 0.95251 1.21231 0.92166 0.99441 1.01896 1.21309 0.95813 0.95713 0.99850 1.17656 0.76720 0.93511 1.12596 1.91440 1.29997 1.97383 1.94766 1.19476 0.92468 0.85201 0.99434 1.86233 1.37032 1.13048 1.88454 1.23083 0.93277 0.80381 1.03753 1.22694 0.94878 0.97172 0.87981 1.87874 1.56772 1.50465 1.38070 1.19866 0.86815 0.83815 0.96184 1.21388 1.23174 1.11577 1.03056 0.92454 1.25957 0.96941 0.94025 1.02104 1.70051 1.34638 1.14146 1.37915 0.85177 0.77712 0.78741 0.77746 1.18801 1.19604 1.19331 1.21329 0.90471 1.01300 1.07929 0.89309 0.90760 0.89365 0.81310 0.82098 0.86777 0.90383 0.89447 0.93697 0.98579 0.99813 0.91871 0.82832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 71.23 0.71 -0.34 16 2 C -0.05 -0.91 5.88 -19.87 -0.12 -1.02 16 3 C -0.13 -2.08 9.69 22.28 0.22 -1.86 16 4 C -0.11 -2.33 10.02 22.30 0.22 -2.10 16 5 C 0.01 0.46 7.31 22.45 0.16 0.62 16 6 F -0.16 -5.85 17.11 44.97 0.77 -5.08 16 7 C 0.08 2.52 6.69 22.53 0.15 2.67 16 8 O -0.33 -12.59 9.97 -88.44 -0.88 -13.47 16 9 C 0.07 2.10 5.12 71.98 0.37 2.47 16 10 C 0.05 1.88 6.32 71.98 0.45 2.34 16 11 O -0.41 -21.50 10.29 -144.34 -1.49 -22.99 16 12 C 0.21 12.22 5.69 71.24 0.41 12.62 16 13 C -0.55 -34.64 9.43 25.60 0.24 -34.39 16 14 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 15 C 0.01 0.50 5.46 84.66 0.46 0.97 16 16 N -0.93 -56.96 13.28 21.45 0.28 -56.67 16 17 Si 0.98 45.80 29.54 68.60 2.03 47.83 16 18 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 C -0.19 -4.32 8.69 22.36 0.19 -4.13 16 22 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 24 H 0.09 0.55 8.08 -2.38 -0.02 0.53 16 25 H 0.17 1.42 8.06 -2.91 -0.02 1.39 16 26 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 27 H 0.11 2.40 7.65 -2.39 -0.02 2.38 16 28 H 0.08 2.21 7.67 -2.39 -0.02 2.19 16 29 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 32 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 33 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 34 H 0.15 2.78 6.30 -2.91 -0.02 2.76 16 Total: -1.00 -76.99 302.58 5.28 -71.70 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: 1.09 Total: 0.84 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 3.48 Total: -22.17 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.28 Total: -56.67 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -2.37 Total: -36.45 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 0.77 Total: -5.08 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -76.99 5.28 -71.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292750142.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.541 kcal (2) G-P(sol) polarization free energy of solvation -76.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds