Wall clock time and date at job start Mon Mar 30 2020 07:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29031 * 124.91786 * 2 1 4 4 C 1.31783 * 117.12115 * 180.02562 * 3 2 1 5 5 C 1.50700 * 122.74491 * 179.97438 * 4 3 2 6 6 C 1.33631 * 114.50693 * 359.97438 * 4 3 2 7 7 C 1.50693 * 126.04020 * 180.02562 * 6 4 3 8 8 N 1.46908 * 109.47347 * 89.99798 * 7 6 4 9 9 C 1.46894 * 110.99955 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.47779 * 324.99869 * 9 8 7 11 11 C 1.52998 * 109.47018 * 85.00186 * 9 8 7 12 12 C 1.53002 * 109.47229 * 204.99899 * 9 8 7 13 13 C 1.50706 * 109.47153 * 64.99752 * 12 9 8 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 9 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 9 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47364 * 179.72558 * 17 15 13 19 19 H 1.48508 * 109.46883 * 299.72681 * 17 15 13 20 20 H 1.48497 * 109.46870 * 59.72491 * 17 15 13 21 21 S 1.70983 * 124.91527 * 180.31413 * 2 1 3 22 22 H 1.08995 * 109.47236 * 90.02383 * 1 2 3 23 23 H 1.09004 * 109.47073 * 210.02658 * 1 2 3 24 24 H 1.09004 * 109.47226 * 330.02368 * 1 2 3 25 25 H 1.09003 * 109.47542 * 269.99855 * 5 4 3 26 26 H 1.09010 * 109.47221 * 30.00119 * 5 4 3 27 27 H 1.09000 * 109.47187 * 149.99712 * 5 4 3 28 28 H 1.09002 * 109.47128 * 329.99908 * 7 6 4 29 29 H 1.09003 * 109.47028 * 209.99504 * 7 6 4 30 30 H 1.00904 * 110.99848 * 56.04922 * 8 7 6 31 31 H 1.08995 * 109.47190 * 60.00037 * 11 9 8 32 32 H 1.09007 * 109.46878 * 179.97438 * 11 9 8 33 33 H 1.09001 * 109.46923 * 299.99707 * 11 9 8 34 34 H 1.09004 * 109.47178 * 305.00542 * 12 9 8 35 35 H 1.08993 * 109.47411 * 185.00225 * 12 9 8 36 36 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8792 -0.0005 5 6 4.5307 2.0245 -0.0012 6 6 3.9354 -0.4006 -0.0004 7 6 5.3574 -0.8994 -0.0004 8 7 5.8196 -1.0614 1.3846 9 6 7.2050 -1.5481 1.4238 10 1 7.3735 -2.2322 0.5922 11 6 8.1653 -0.3623 1.3114 12 6 7.4512 -2.2803 2.7444 13 6 6.5924 -3.5174 2.8006 14 1 5.9368 -3.7575 1.9766 15 6 6.6434 -4.3427 3.9039 16 7 7.4457 -4.0531 4.9050 17 14 5.5794 -5.8764 3.9732 18 1 5.8227 -6.5904 5.2524 19 1 4.1480 -5.4902 3.8863 20 1 5.9214 -6.7679 2.8360 21 16 2.4856 -1.4020 -0.0077 22 1 -0.3633 -0.0004 -1.0276 23 1 -0.3633 -0.8898 0.5143 24 1 -0.3634 0.8902 0.5135 25 1 4.7665 2.3004 -1.0290 26 1 4.0908 2.8792 0.5128 27 1 5.4434 1.7222 0.5124 28 1 5.9949 -0.1799 -0.5143 29 1 5.4056 -1.8596 -0.5141 30 1 5.2066 -1.6745 1.9010 31 1 7.9969 0.3217 2.1431 32 1 9.1934 -0.7234 1.3409 33 1 7.9900 0.1593 0.3705 34 1 7.1974 -1.6238 3.5767 35 1 8.5015 -2.5638 2.8124 36 1 7.9984 -3.2569 4.8690 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308834497.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:11 Heat of formation + Delta-G solvation = -2.993437 kcal Electronic energy + Delta-G solvation = -16544.227381 eV Core-core repulsion = 13960.258476 eV Total energy + Delta-G solvation = -2583.968906 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.94140 -38.49337 -35.48309 -34.22542 -32.19493 -30.10904 -28.96738 -28.71002 -25.34270 -24.51995 -23.59316 -21.42070 -19.87938 -18.92739 -18.86400 -16.90350 -16.57115 -15.94194 -15.67491 -15.57485 -15.01615 -14.79923 -14.38353 -14.15513 -14.01602 -13.60725 -13.35804 -13.30341 -13.03257 -12.96709 -12.82772 -12.60233 -12.50827 -12.31838 -12.04115 -11.95723 -11.44527 -10.68179 -10.63362 -10.56216 -10.28662 -9.56234 -9.33122 -8.68091 -6.38567 -0.30034 0.36494 0.77014 1.50275 1.57949 1.75577 1.76685 2.54807 3.12624 3.16329 3.41664 3.86292 4.03295 4.07553 4.17465 4.44704 4.54697 4.56358 4.58804 4.60185 4.65345 4.75015 4.84865 4.91272 5.01779 5.07048 5.09934 5.15409 5.25814 5.40134 5.42338 5.94596 6.17008 6.21032 6.38871 6.58151 6.75137 7.42675 8.72753 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.019691 B = 0.006267 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.661934 B = 4466.793021 C = 5587.355547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.047 3.953 3 N -0.499 5.499 4 C 0.069 3.931 5 C -0.074 4.074 6 C -0.234 4.234 7 C 0.143 3.857 8 N -0.677 5.677 9 C 0.101 3.899 10 H 0.028 0.972 11 C -0.128 4.128 12 C 0.011 3.989 13 C -0.609 4.609 14 H 0.047 0.953 15 C -0.035 4.035 16 N -0.937 5.937 17 Si 1.110 2.890 18 H -0.285 1.285 19 H -0.268 1.268 20 H -0.271 1.271 21 S 0.112 5.888 22 H 0.104 0.896 23 H 0.097 0.903 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.032 0.968 30 H 0.340 0.660 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.068 0.932 34 H -0.007 1.007 35 H -0.006 1.006 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.120 8.191 -13.016 18.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.231 4.231 3 N -0.215 5.215 4 C -0.063 4.063 5 C -0.134 4.134 6 C -0.355 4.355 7 C 0.012 3.988 8 N -0.309 5.309 9 C -0.008 4.008 10 H 0.046 0.954 11 C -0.186 4.186 12 C -0.027 4.027 13 C -0.647 4.647 14 H 0.065 0.935 15 C -0.233 4.233 16 N -0.574 5.574 17 Si 0.932 3.068 18 H -0.210 1.210 19 H -0.193 1.193 20 H -0.196 1.196 21 S 0.368 5.632 22 H 0.123 0.877 23 H 0.115 0.885 24 H 0.112 0.888 25 H 0.106 0.894 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.121 0.879 29 H 0.050 0.950 30 H 0.159 0.841 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.011 0.989 35 H 0.012 0.988 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.799 6.978 -12.030 18.238 hybrid contribution 1.210 0.992 -0.811 1.762 sum -10.589 7.970 -12.841 18.454 Atomic orbital electron populations 1.20627 0.82468 1.05243 1.05259 1.27633 1.03153 0.90501 1.01852 1.66228 1.04818 1.32460 1.18039 1.20489 0.90429 0.94687 1.00734 1.20399 0.95847 0.93643 1.03472 1.25633 0.99670 0.95996 1.14212 1.20253 0.88399 0.99378 0.90801 1.60713 1.03421 1.54909 1.11887 1.21346 0.88442 0.94478 0.96552 0.95436 1.21733 0.97620 0.97324 1.01950 1.19312 0.95123 0.94560 0.93661 1.22308 1.26563 1.10238 1.05587 0.93457 1.27275 0.98557 1.05246 0.92212 1.70909 1.25260 1.27737 1.33515 0.83023 0.74940 0.72310 0.76536 1.21025 1.19313 1.19578 1.84040 0.97867 1.12652 1.68678 0.87723 0.88467 0.88809 0.89361 0.90741 0.90158 0.87876 0.94972 0.84078 0.93087 0.92714 0.91273 0.98877 0.98781 0.93470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.20 10.46 71.23 0.75 -0.45 16 2 C 0.05 1.18 7.39 88.52 0.65 1.83 16 3 N -0.50 -14.72 10.53 -179.40 -1.89 -16.61 16 4 C 0.07 2.03 6.74 41.52 0.28 2.31 16 5 C -0.07 -1.80 9.82 71.24 0.70 -1.10 16 6 C -0.23 -7.12 6.10 24.64 0.15 -6.97 16 7 C 0.14 4.46 5.41 85.55 0.46 4.92 16 8 N -0.68 -25.80 6.30 -495.58 -3.12 -28.92 16 9 C 0.10 4.11 2.59 44.92 0.12 4.23 16 10 H 0.03 1.14 7.80 -2.39 -0.02 1.12 16 11 C -0.13 -4.27 9.41 71.98 0.68 -3.59 16 12 C 0.01 0.55 3.88 29.85 0.12 0.67 16 13 C -0.61 -33.91 8.12 25.60 0.21 -33.70 16 14 H 0.05 2.56 7.49 -2.91 -0.02 2.54 16 15 C -0.03 -2.01 5.46 84.65 0.46 -1.55 16 16 N -0.94 -58.14 13.65 21.45 0.29 -57.85 16 17 Si 1.11 50.04 29.90 68.60 2.05 52.09 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 19 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 21 S 0.11 3.05 23.18 -56.49 -1.31 1.74 16 22 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 24 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 25 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 27 H 0.08 2.01 7.35 -2.39 -0.02 1.99 16 28 H 0.10 2.82 6.72 -2.39 -0.02 2.80 16 29 H 0.03 1.03 8.05 -2.39 -0.02 1.01 16 30 H 0.34 14.83 7.20 -89.69 -0.65 14.19 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.07 1.89 7.45 -2.39 -0.02 1.87 16 34 H -0.01 -0.40 8.01 -2.39 -0.02 -0.42 16 35 H -0.01 -0.33 8.00 -2.39 -0.02 -0.35 16 36 H 0.26 16.11 7.22 -92.71 -0.67 15.44 16 Total: -1.00 -66.45 312.57 1.12 -65.33 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.52 Total: 17.61 kcal Atomic # 6 Polarization: -37.96 SS G_CDS: 4.57 Total: -33.39 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -4.72 Total: -103.38 kcal Atomic # 14 Polarization: 50.04 SS G_CDS: 2.05 Total: 52.09 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -1.31 Total: 1.74 kcal Total: -66.45 1.12 -65.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308834497.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.336 kcal (2) G-P(sol) polarization free energy of solvation -66.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds