Wall clock time and date at job start Mon Mar 30 2020 07:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29029 * 124.91504 * 2 1 4 4 C 1.31778 * 117.12242 * 180.02562 * 3 2 1 5 5 C 1.50698 * 122.74826 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47254 * 305.01930 * 5 4 3 7 7 N 1.46897 * 109.47637 * 180.02562 * 6 5 4 8 8 C 1.46899 * 111.00355 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47043 * 324.99919 * 8 7 6 10 10 C 1.53002 * 109.47394 * 84.99974 * 8 7 6 11 11 C 1.52997 * 109.47254 * 204.99848 * 8 7 6 12 12 C 1.50705 * 109.47390 * 64.99638 * 11 8 7 13 13 H 1.08000 * 119.99498 * 0.02562 * 12 11 8 14 14 C 1.37870 * 120.00441 * 180.02562 * 12 11 8 15 15 N 1.31513 * 119.99840 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00083 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47080 * 89.99765 * 16 14 12 18 18 H 1.48497 * 109.46846 * 209.99784 * 16 14 12 19 19 H 1.48499 * 109.47093 * 329.99702 * 16 14 12 20 20 C 1.33644 * 114.50294 * 0.22411 * 4 3 2 21 21 S 1.70972 * 124.91628 * 180.02562 * 2 1 3 22 22 H 1.08996 * 109.47203 * 90.00086 * 1 2 3 23 23 H 1.08994 * 109.47135 * 210.00324 * 1 2 3 24 24 H 1.09006 * 109.47237 * 330.00098 * 1 2 3 25 25 H 1.09008 * 109.47361 * 185.01762 * 5 4 3 26 26 H 1.08997 * 109.47244 * 65.02226 * 5 4 3 27 27 H 1.09006 * 109.47553 * 59.99854 * 6 5 4 28 28 H 1.09006 * 109.47261 * 300.00512 * 6 5 4 29 29 H 1.00898 * 111.00020 * 56.03964 * 7 6 5 30 30 H 1.09002 * 109.47075 * 59.99404 * 10 8 7 31 31 H 1.08996 * 109.47407 * 180.02562 * 10 8 7 32 32 H 1.09000 * 109.46986 * 300.00133 * 10 8 7 33 33 H 1.09001 * 109.47630 * 184.99901 * 11 8 7 34 34 H 1.09004 * 109.47346 * 305.00031 * 11 8 7 35 35 H 0.97002 * 119.99729 * 180.02562 * 15 14 12 36 36 H 1.07996 * 126.03785 * 179.77067 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 4.5307 2.0246 -0.0012 6 6 4.2326 2.9500 -1.1825 7 7 5.1878 4.0660 -1.1835 8 6 4.9310 4.9777 -2.3064 9 1 4.5911 4.4048 -3.1692 10 6 3.8527 5.9872 -1.9075 11 6 6.2191 5.7220 -2.6638 12 6 7.2420 4.7398 -3.1736 13 1 6.9977 3.6897 -3.2368 14 6 8.4898 5.1816 -3.5594 15 7 8.7871 6.4604 -3.4829 16 14 9.7574 3.9641 -4.1920 17 1 9.6230 3.8299 -5.6648 18 1 11.1204 4.4522 -3.8617 19 1 9.5365 2.6423 -3.5523 20 6 3.9354 -0.4006 -0.0057 21 16 2.4856 -1.4019 -0.0006 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 5.5448 1.6353 -0.0914 26 1 4.4375 2.5829 0.9303 27 1 3.2185 3.3393 -1.0923 28 1 4.3258 2.3916 -2.1140 29 1 6.1384 3.7283 -1.2015 30 1 4.1925 6.5600 -1.0447 31 1 3.6618 6.6633 -2.7408 32 1 2.9350 5.4569 -1.6529 33 1 6.0090 6.4617 -3.4364 34 1 6.6072 6.2232 -1.7770 35 1 9.6649 6.7713 -3.7546 36 1 4.9545 -0.7580 -0.0106 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308849474.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:01 Heat of formation + Delta-G solvation = 20.792519 kcal Electronic energy + Delta-G solvation = -16134.975924 eV Core-core repulsion = 13552.038455 eV Total energy + Delta-G solvation = -2582.937469 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.99506 -36.71483 -33.78295 -32.55396 -31.15895 -28.73141 -27.45976 -27.34154 -23.61523 -22.82051 -21.54608 -19.81800 -19.30921 -17.47120 -16.32990 -15.56993 -15.42560 -14.87378 -14.51887 -14.37238 -13.74963 -13.55126 -13.05285 -12.93514 -12.77113 -12.35373 -11.90323 -11.79118 -11.63282 -11.36329 -11.14943 -11.03955 -10.71928 -10.57747 -10.45623 -10.11293 -9.68531 -9.49494 -9.21275 -9.03788 -8.71834 -8.38282 -7.59460 -6.01378 -4.04403 0.62585 1.26114 1.63022 2.74383 3.29980 3.36720 3.38768 3.96110 4.43874 4.75593 4.92388 5.12937 5.19242 5.22909 5.29028 5.39416 5.59035 5.66322 5.68279 5.85437 6.02586 6.15988 6.26243 6.36034 6.41549 6.44027 6.63407 6.98815 7.00732 7.56404 7.66178 7.71102 7.98934 8.10633 8.32808 8.40621 9.01837 9.59580 11.09590 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.026552 B = 0.004290 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.297022 B = 6525.427400 C = 7341.768706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.049 3.951 3 N -0.464 5.464 4 C 0.084 3.916 5 C -0.045 4.045 6 C 0.070 3.930 7 N -0.684 5.684 8 C 0.089 3.911 9 H 0.027 0.973 10 C -0.135 4.135 11 C 0.020 3.980 12 C -0.523 4.523 13 H 0.051 0.949 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.261 4.261 21 S 0.095 5.905 22 H 0.086 0.914 23 H 0.079 0.921 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.019 0.981 29 H 0.353 0.647 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.021 0.979 34 H 0.026 0.974 35 H 0.261 0.739 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.068 -14.752 7.635 21.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.230 4.230 3 N -0.180 5.180 4 C -0.048 4.048 5 C -0.085 4.085 6 C -0.060 4.060 7 N -0.318 5.318 8 C -0.021 4.021 9 H 0.045 0.955 10 C -0.193 4.193 11 C -0.017 4.017 12 C -0.562 4.562 13 H 0.069 0.931 14 C -0.141 4.141 15 N -0.530 5.530 16 Si 0.718 3.282 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.399 4.399 21 S 0.349 5.651 22 H 0.104 0.896 23 H 0.098 0.902 24 H 0.108 0.892 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.090 0.910 28 H 0.037 0.963 29 H 0.173 0.827 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.039 0.961 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -14.741 -14.814 8.051 22.395 hybrid contribution 1.809 -0.564 -1.211 2.249 sum -12.932 -15.378 6.840 21.225 Atomic orbital electron populations 1.20436 0.85266 1.04102 1.03902 1.27069 1.01740 0.90841 1.03323 1.66098 1.04704 1.31328 1.15819 1.20391 0.90070 0.94393 0.99922 1.20234 0.95078 0.92081 1.01126 1.21799 0.98055 0.91450 0.94733 1.60548 1.07757 1.17081 1.46374 1.21590 0.97586 0.93160 0.89744 0.95454 1.21790 0.97806 0.98859 1.00839 1.19286 0.89942 0.95475 0.97010 1.21180 0.97877 0.93833 1.43281 0.93070 1.24986 0.98351 0.95044 0.95719 1.69963 1.21636 1.13562 1.47837 0.86639 0.81009 0.81440 0.79161 1.20770 1.21175 1.19952 1.26835 1.02938 0.95630 1.14527 1.83844 0.98552 1.13321 1.69408 0.89594 0.90243 0.89211 0.90278 0.89287 0.90982 0.96283 0.82689 0.92649 0.93410 0.94420 0.96079 0.95537 0.92958 0.80581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.46 36.01 0.38 -0.20 16 2 C 0.05 0.55 7.39 -13.45 -0.10 0.45 16 3 N -0.46 -6.64 10.34 -8.06 -0.08 -6.72 16 4 C 0.08 1.18 6.08 -84.23 -0.51 0.67 16 5 C -0.04 -0.66 5.97 -27.89 -0.17 -0.82 16 6 C 0.07 1.21 5.38 -3.83 -0.02 1.19 16 7 N -0.68 -13.62 6.31 -106.73 -0.67 -14.29 16 8 C 0.09 1.92 2.59 -67.71 -0.18 1.74 16 9 H 0.03 0.62 7.80 -51.93 -0.41 0.21 16 10 C -0.13 -2.57 9.42 37.16 0.35 -2.22 16 11 C 0.02 0.52 4.57 -27.88 -0.13 0.40 16 12 C -0.52 -14.53 8.12 -34.44 -0.28 -14.81 16 13 H 0.05 1.38 7.49 -52.49 -0.39 0.99 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 16 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 C -0.26 -3.11 11.07 29.12 0.32 -2.79 16 21 S 0.09 0.95 23.18 -107.50 -2.49 -1.54 16 22 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 1.07 8.03 -51.92 -0.42 0.66 16 26 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 27 H 0.07 1.28 7.37 -51.93 -0.38 0.90 16 28 H 0.02 0.35 8.06 -51.93 -0.42 -0.07 16 29 H 0.35 7.45 7.21 -39.29 -0.28 7.17 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.04 0.65 7.45 -51.93 -0.39 0.27 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 315.40 15.07 4.75 4.75 Total: -1.00 -30.77 315.40 -8.84 -39.61 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.63 Total: 2.41 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -0.43 Total: -14.77 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -0.02 Total: -46.93 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.49 Total: -1.54 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.77 -8.84 -39.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308849474.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.398 kcal (2) G-P(sol) polarization free energy of solvation -30.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds