Wall clock time and date at job start Mon Mar 30 2020 07:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29029 * 124.91504 * 2 1 4 4 C 1.31778 * 117.12242 * 180.02562 * 3 2 1 5 5 C 1.50698 * 122.74826 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47254 * 305.01930 * 5 4 3 7 7 N 1.46897 * 109.47637 * 180.02562 * 6 5 4 8 8 C 1.46899 * 111.00355 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47043 * 324.99919 * 8 7 6 10 10 C 1.53002 * 109.47394 * 84.99974 * 8 7 6 11 11 C 1.52997 * 109.47254 * 204.99848 * 8 7 6 12 12 C 1.50705 * 109.47390 * 64.99638 * 11 8 7 13 13 H 1.08000 * 119.99498 * 0.02562 * 12 11 8 14 14 C 1.37870 * 120.00441 * 180.02562 * 12 11 8 15 15 N 1.31513 * 119.99840 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00083 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47080 * 89.99765 * 16 14 12 18 18 H 1.48497 * 109.46846 * 209.99784 * 16 14 12 19 19 H 1.48499 * 109.47093 * 329.99702 * 16 14 12 20 20 C 1.33644 * 114.50294 * 0.22411 * 4 3 2 21 21 S 1.70972 * 124.91628 * 180.02562 * 2 1 3 22 22 H 1.08996 * 109.47203 * 90.00086 * 1 2 3 23 23 H 1.08994 * 109.47135 * 210.00324 * 1 2 3 24 24 H 1.09006 * 109.47237 * 330.00098 * 1 2 3 25 25 H 1.09008 * 109.47361 * 185.01762 * 5 4 3 26 26 H 1.08997 * 109.47244 * 65.02226 * 5 4 3 27 27 H 1.09006 * 109.47553 * 59.99854 * 6 5 4 28 28 H 1.09006 * 109.47261 * 300.00512 * 6 5 4 29 29 H 1.00898 * 111.00020 * 56.03964 * 7 6 5 30 30 H 1.09002 * 109.47075 * 59.99404 * 10 8 7 31 31 H 1.08996 * 109.47407 * 180.02562 * 10 8 7 32 32 H 1.09000 * 109.46986 * 300.00133 * 10 8 7 33 33 H 1.09001 * 109.47630 * 184.99901 * 11 8 7 34 34 H 1.09004 * 109.47346 * 305.00031 * 11 8 7 35 35 H 0.97002 * 119.99729 * 180.02562 * 15 14 12 36 36 H 1.07996 * 126.03785 * 179.77067 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 4.5307 2.0246 -0.0012 6 6 4.2326 2.9500 -1.1825 7 7 5.1878 4.0660 -1.1835 8 6 4.9310 4.9777 -2.3064 9 1 4.5911 4.4048 -3.1692 10 6 3.8527 5.9872 -1.9075 11 6 6.2191 5.7220 -2.6638 12 6 7.2420 4.7398 -3.1736 13 1 6.9977 3.6897 -3.2368 14 6 8.4898 5.1816 -3.5594 15 7 8.7871 6.4604 -3.4829 16 14 9.7574 3.9641 -4.1920 17 1 9.6230 3.8299 -5.6648 18 1 11.1204 4.4522 -3.8617 19 1 9.5365 2.6423 -3.5523 20 6 3.9354 -0.4006 -0.0057 21 16 2.4856 -1.4019 -0.0006 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 5.5448 1.6353 -0.0914 26 1 4.4375 2.5829 0.9303 27 1 3.2185 3.3393 -1.0923 28 1 4.3258 2.3916 -2.1140 29 1 6.1384 3.7283 -1.2015 30 1 4.1925 6.5600 -1.0447 31 1 3.6618 6.6633 -2.7408 32 1 2.9350 5.4569 -1.6529 33 1 6.0090 6.4617 -3.4364 34 1 6.6072 6.2232 -1.7770 35 1 9.6649 6.7713 -3.7546 36 1 4.9545 -0.7580 -0.0106 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308849474.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:01 Heat of formation + Delta-G solvation = 0.895654 kcal Electronic energy + Delta-G solvation = -16135.838717 eV Core-core repulsion = 13552.038455 eV Total energy + Delta-G solvation = -2583.800262 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.93001 -38.37767 -35.29395 -34.22471 -32.46441 -29.79740 -29.28927 -28.62533 -25.29112 -24.18211 -22.81407 -21.19247 -20.60844 -18.53810 -18.37703 -16.98877 -16.63721 -16.37489 -15.97191 -15.61866 -15.02307 -14.69692 -14.46921 -14.02488 -13.86213 -13.56308 -13.43557 -13.18931 -13.01099 -12.98995 -12.63674 -12.55644 -12.40980 -12.30458 -12.19206 -11.73303 -11.25013 -11.01360 -10.59091 -10.56817 -10.35855 -9.60480 -9.23606 -8.19456 -6.30511 -0.23609 0.44671 0.75819 1.39876 1.40466 1.51338 1.78622 2.40271 3.09697 3.15669 3.44677 4.00126 4.09518 4.27355 4.32059 4.34968 4.49726 4.60209 4.64432 4.67758 4.68117 4.71493 4.89771 5.03617 5.10398 5.12088 5.19785 5.29397 5.32245 5.48000 5.54314 5.83251 6.20388 6.36611 6.64364 6.82611 6.84206 7.38340 8.92307 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.026552 B = 0.004290 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.297022 B = 6525.427400 C = 7341.768706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.037 3.963 3 N -0.503 5.503 4 C 0.059 3.941 5 C -0.036 4.036 6 C 0.080 3.920 7 N -0.683 5.683 8 C 0.095 3.905 9 H 0.019 0.981 10 C -0.127 4.127 11 C 0.028 3.972 12 C -0.536 4.536 13 H 0.056 0.944 14 C 0.005 3.995 15 N -0.930 5.930 16 Si 0.962 3.038 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.262 1.262 20 C -0.270 4.270 21 S 0.150 5.850 22 H 0.097 0.903 23 H 0.105 0.895 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.009 0.991 29 H 0.345 0.655 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.056 0.944 33 H -0.005 1.005 34 H 0.000 1.000 35 H 0.263 0.737 36 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.722 -17.222 7.820 23.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.241 4.241 3 N -0.220 5.220 4 C -0.073 4.073 5 C -0.076 4.076 6 C -0.050 4.050 7 N -0.316 5.316 8 C -0.014 4.014 9 H 0.037 0.963 10 C -0.185 4.185 11 C -0.009 4.009 12 C -0.574 4.574 13 H 0.075 0.925 14 C -0.193 4.193 15 N -0.570 5.570 16 Si 0.787 3.213 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.186 1.186 20 C -0.409 4.409 21 S 0.405 5.595 22 H 0.115 0.885 23 H 0.124 0.876 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.027 0.973 29 H 0.164 0.836 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.013 0.987 34 H 0.018 0.982 35 H 0.072 0.928 36 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -15.424 -17.302 8.244 24.601 hybrid contribution 1.941 0.158 -1.255 2.317 sum -13.483 -17.143 6.989 22.903 Atomic orbital electron populations 1.20620 0.82917 1.05317 1.04948 1.27707 1.03326 0.91016 1.02011 1.66094 1.05056 1.33124 1.17682 1.20282 0.90193 0.94751 1.02052 1.20074 0.96030 0.92074 0.99469 1.21731 0.96904 0.90800 0.95586 1.60583 1.07817 1.18040 1.45170 1.21423 0.96072 0.93646 0.90288 0.96255 1.21702 0.97543 0.98336 1.00923 1.19133 0.91895 0.94982 0.94897 1.21506 0.98511 0.94290 1.43099 0.92549 1.25898 1.00661 0.96898 0.95860 1.70098 1.22359 1.15662 1.48898 0.85499 0.77982 0.79294 0.78574 1.20211 1.20782 1.18573 1.27131 1.04799 0.95635 1.13308 1.83619 0.96495 1.11426 1.67970 0.88492 0.87648 0.89394 0.89434 0.89725 0.91476 0.97304 0.83599 0.92959 0.92761 0.92543 0.98664 0.98175 0.92775 0.78999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.46 71.24 0.75 -0.25 16 2 C 0.04 0.78 7.39 88.52 0.65 1.43 16 3 N -0.50 -13.92 10.34 -179.40 -1.86 -15.78 16 4 C 0.06 1.60 6.08 41.52 0.25 1.85 16 5 C -0.04 -1.05 5.97 29.85 0.18 -0.87 16 6 C 0.08 2.74 5.38 86.30 0.46 3.21 16 7 N -0.68 -27.38 6.31 -491.57 -3.10 -30.48 16 8 C 0.10 4.19 2.59 44.92 0.12 4.30 16 9 H 0.02 0.88 7.80 -2.39 -0.02 0.86 16 10 C -0.13 -4.81 9.42 71.98 0.68 -4.13 16 11 C 0.03 1.52 4.57 29.85 0.14 1.65 16 12 C -0.54 -30.12 8.12 25.60 0.21 -29.92 16 13 H 0.06 3.05 7.49 -2.91 -0.02 3.02 16 14 C 0.01 0.29 5.46 84.65 0.46 0.75 16 15 N -0.93 -56.58 13.29 21.44 0.28 -56.30 16 16 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 20 C -0.27 -5.95 11.07 66.78 0.74 -5.22 16 21 S 0.15 2.63 23.18 -56.49 -1.31 1.32 16 22 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.09 2.32 8.03 -2.38 -0.02 2.30 16 26 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.07 2.38 7.37 -2.38 -0.02 2.36 16 28 H 0.01 0.32 8.06 -2.38 -0.02 0.30 16 29 H 0.34 14.70 7.21 -89.70 -0.65 14.05 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.06 1.91 7.45 -2.39 -0.02 1.89 16 33 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 34 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 35 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 36 H 0.19 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -66.32 315.40 1.09 -65.23 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.41 Total: 17.15 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 4.63 Total: -27.18 kcal Atomic # 7 Polarization: -97.88 SS G_CDS: -4.67 Total: -102.55 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.31 Total: 1.32 kcal Total: -66.32 1.09 -65.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308849474.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.127 kcal (2) G-P(sol) polarization free energy of solvation -66.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds