Wall clock time and date at job start Mon Mar 30 2020 06:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08002 * 120.00331 * 114.37005 * 4 2 1 6 6 C 1.37885 * 120.00119 * 294.35814 * 4 2 1 7 7 N 1.31516 * 120.00168 * 156.60535 * 6 4 2 8 8 Si 1.86799 * 119.99974 * 336.88923 * 6 4 2 9 9 H 1.48495 * 109.47179 * 179.71887 * 8 6 4 10 10 H 1.48504 * 109.47000 * 299.71811 * 8 6 4 11 11 H 1.48500 * 109.47297 * 59.71926 * 8 6 4 12 12 N 1.46897 * 109.47069 * 240.00066 * 2 1 3 13 13 C 1.46910 * 110.99968 * 84.99944 * 12 2 1 14 14 C 1.52995 * 109.47174 * 180.02562 * 13 12 2 15 15 C 1.50700 * 109.47384 * 179.97438 * 14 13 12 16 16 C 1.38712 * 120.40024 * 90.00050 * 15 14 13 17 17 C 1.38566 * 118.43237 * 179.97438 * 16 15 14 18 18 C 1.38390 * 119.15000 * 0.02562 * 17 16 15 19 19 Cl 1.73608 * 119.63352 * 180.02562 * 18 17 16 20 20 N 1.31952 * 120.73338 * 359.97438 * 18 17 16 21 21 C 1.31900 * 121.70350 * 359.73642 * 20 18 17 22 22 H 1.09006 * 109.47378 * 53.10132 * 1 2 3 23 23 H 1.08996 * 109.47246 * 173.10534 * 1 2 3 24 24 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 25 25 H 0.97002 * 119.99516 * 355.21605 * 7 6 4 26 26 H 1.00899 * 110.99860 * 321.05226 * 12 2 1 27 27 H 1.09000 * 109.46893 * 300.00418 * 13 12 2 28 28 H 1.08997 * 109.46937 * 60.00212 * 13 12 2 29 29 H 1.09007 * 109.47226 * 300.00268 * 14 13 12 30 30 H 1.09008 * 109.47308 * 59.99536 * 14 13 12 31 31 H 1.07997 * 120.78214 * 359.95360 * 16 15 14 32 32 H 1.08004 * 120.42075 * 179.97438 * 17 16 15 33 33 H 1.08001 * 119.60968 * 180.28460 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5762 -1.6385 1.1339 6 6 1.7978 -0.1755 2.4794 7 7 1.8025 -0.9538 3.5396 8 14 1.4655 1.6533 2.6648 9 1 1.2395 1.9726 4.0973 10 1 2.6336 2.4219 2.1647 11 1 0.2592 2.0194 1.8799 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2227 -2.3469 14 6 2.5949 -0.5330 -3.5745 15 6 2.6588 0.4056 -4.7518 16 6 3.8123 1.1317 -5.0089 17 6 3.8265 1.9823 -6.1026 18 6 2.6968 2.0787 -6.8963 19 17 2.7010 3.1400 -8.2702 20 7 1.6170 1.3722 -6.6209 21 6 1.5711 0.5490 -5.5913 22 1 -0.3634 0.6170 -0.8219 23 1 -0.3633 -1.0202 -0.1234 24 1 -0.3633 0.4033 0.9453 25 1 1.9017 -1.9132 3.4364 26 1 1.4495 -1.4978 -1.4101 27 1 1.0870 0.6164 -2.5525 28 1 2.7588 1.0462 -2.1183 29 1 3.5903 -0.9272 -3.3692 30 1 1.9182 -1.3565 -3.8030 31 1 4.6789 1.0366 -4.3714 32 1 4.7075 2.5632 -6.3323 33 1 0.6711 -0.0165 -5.3999 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308850773.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:14 Heat of formation + Delta-G solvation = 16.713715 kcal Electronic energy + Delta-G solvation = -15780.636604 eV Core-core repulsion = 13059.645464 eV Total energy + Delta-G solvation = -2720.991140 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.51219 -37.03607 -36.54816 -34.13300 -32.59470 -31.99441 -29.80218 -27.02043 -24.78280 -24.01801 -23.24981 -21.28972 -19.97785 -17.65394 -17.44620 -16.98613 -15.58367 -15.00742 -14.61351 -14.43773 -13.98658 -13.84021 -13.45222 -13.34442 -12.39495 -12.38828 -12.17775 -11.91340 -11.62204 -11.52651 -11.42720 -10.97041 -10.86987 -10.47956 -10.11867 -10.08618 -9.83698 -9.74764 -9.06997 -8.98795 -8.18603 -7.51113 -6.44419 -4.01080 0.67827 0.93327 1.58677 3.37640 3.38862 3.42881 3.59844 4.22108 4.47099 4.50621 4.63478 4.69407 4.83396 5.15347 5.20889 5.26206 5.40670 5.54981 5.68973 5.76145 5.84094 6.17690 6.23614 6.27837 6.29974 6.39757 6.59906 6.82380 7.16346 7.47094 7.75731 8.22918 8.32011 8.45277 9.01808 9.63329 10.92668 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.040399 B = 0.003718 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.915461 B = 7529.442417 C = 7729.971177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.190 3.810 3 H 0.025 0.975 4 C -0.591 4.591 5 H 0.064 0.936 6 C 0.034 3.966 7 N -0.902 5.902 8 Si 1.035 2.965 9 H -0.285 1.285 10 H -0.284 1.284 11 H -0.280 1.280 12 N -0.675 5.675 13 C 0.062 3.938 14 C -0.077 4.077 15 C -0.117 4.117 16 C -0.060 4.060 17 C -0.151 4.151 18 C 0.163 3.837 19 Cl -0.040 7.040 20 N -0.478 5.478 21 C 0.119 3.881 22 H 0.019 0.981 23 H 0.044 0.956 24 H 0.056 0.944 25 H 0.269 0.731 26 H 0.329 0.671 27 H 0.021 0.979 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.315 5.191 -20.229 21.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.081 3.919 3 H 0.042 0.958 4 C -0.629 4.629 5 H 0.082 0.918 6 C -0.172 4.172 7 N -0.535 5.535 8 Si 0.863 3.137 9 H -0.210 1.210 10 H -0.210 1.210 11 H -0.206 1.206 12 N -0.304 5.304 13 C -0.068 4.068 14 C -0.116 4.116 15 C -0.119 4.119 16 C -0.086 4.086 17 C -0.172 4.172 18 C -0.001 4.001 19 Cl -0.011 7.011 20 N -0.188 5.188 21 C -0.038 4.038 22 H 0.038 0.962 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.146 0.854 27 H 0.039 0.961 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.166 0.834 32 H 0.162 0.838 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.988 6.648 -19.584 20.777 hybrid contribution -0.048 -0.999 -1.000 1.414 sum 1.940 5.649 -20.584 21.433 Atomic orbital electron populations 1.22828 1.01125 0.99737 0.99908 1.19485 0.89010 0.94430 0.88959 0.95754 1.21904 1.39800 1.10965 0.90192 0.91827 1.25637 0.93777 1.05605 0.92171 1.70847 1.44432 1.06318 1.31911 0.84169 0.76991 0.76396 0.76104 1.21034 1.21031 1.20640 1.60747 1.58036 1.08825 1.02822 1.21933 0.98592 0.96042 0.90242 1.20618 1.03887 0.96130 0.90920 1.21124 0.94365 0.98537 0.97913 1.21610 0.98465 0.93152 0.95345 1.21843 0.98621 1.00952 0.95762 1.21607 0.91574 0.95218 0.91692 1.98398 1.98369 1.62566 1.41795 1.66989 1.26613 1.06347 1.18871 1.22625 0.98212 0.94131 0.88859 0.96230 0.93697 0.92465 0.92099 0.85415 0.96116 0.91510 0.89482 0.90599 0.83435 0.83771 0.81846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.78 8.90 37.16 0.33 -3.45 16 2 C 0.19 4.40 2.17 -68.87 -0.15 4.25 16 3 H 0.02 0.58 6.37 -51.93 -0.33 0.25 16 4 C -0.59 -16.40 9.05 -34.44 -0.31 -16.71 16 5 H 0.06 1.93 8.06 -52.49 -0.42 1.50 16 6 C 0.03 0.96 5.19 -17.82 -0.09 0.87 16 7 N -0.90 -27.37 13.70 55.43 0.76 -26.61 16 8 Si 1.04 24.87 26.44 -169.99 -4.50 20.38 16 9 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.26 6.15 56.52 0.35 -5.92 16 12 N -0.67 -13.10 6.23 -107.95 -0.67 -13.78 16 13 C 0.06 0.95 5.47 -3.82 -0.02 0.93 16 14 C -0.08 -0.90 5.63 -27.89 -0.16 -1.06 16 15 C -0.12 -1.28 5.15 -104.48 -0.54 -1.82 16 16 C -0.06 -0.60 9.86 -39.29 -0.39 -0.98 16 17 C -0.15 -1.48 9.88 -39.40 -0.39 -1.87 16 18 C 0.16 1.90 7.27 -17.44 -0.13 1.77 16 19 Cl -0.04 -0.41 29.11 -51.86 -1.51 -1.92 16 20 N -0.48 -6.13 10.34 -10.36 -0.11 -6.23 16 21 C 0.12 1.35 10.86 -17.56 -0.19 1.16 16 22 H 0.02 0.36 7.64 -51.93 -0.40 -0.04 16 23 H 0.04 0.92 8.00 -51.93 -0.42 0.51 16 24 H 0.06 1.30 5.48 -51.93 -0.28 1.02 16 25 H 0.27 8.13 8.73 -40.82 -0.36 7.77 16 26 H 0.33 5.99 8.38 -39.29 -0.33 5.66 16 27 H 0.02 0.32 7.58 -51.93 -0.39 -0.08 16 28 H 0.07 1.08 8.05 -51.93 -0.42 0.66 16 29 H 0.09 1.02 8.10 -51.93 -0.42 0.60 16 30 H 0.08 0.80 8.09 -51.92 -0.42 0.38 16 31 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 294.26 15.07 4.43 4.43 Total: -1.00 -30.49 294.26 -7.93 -38.42 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -4.31 Total: 2.23 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -2.03 Total: -16.91 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -0.02 Total: -46.63 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -4.50 Total: 20.38 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.51 Total: -1.92 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.49 -7.93 -38.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308850773.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.134 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds