Wall clock time and date at job start Mon Mar 30 2020 06:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08002 * 120.00331 * 114.37005 * 4 2 1 6 6 C 1.37885 * 120.00119 * 294.35814 * 4 2 1 7 7 N 1.31516 * 120.00168 * 156.60535 * 6 4 2 8 8 Si 1.86799 * 119.99974 * 336.88923 * 6 4 2 9 9 H 1.48495 * 109.47179 * 179.71887 * 8 6 4 10 10 H 1.48504 * 109.47000 * 299.71811 * 8 6 4 11 11 H 1.48500 * 109.47297 * 59.71926 * 8 6 4 12 12 N 1.46897 * 109.47069 * 240.00066 * 2 1 3 13 13 C 1.46910 * 110.99968 * 84.99944 * 12 2 1 14 14 C 1.52995 * 109.47174 * 180.02562 * 13 12 2 15 15 C 1.50700 * 109.47384 * 179.97438 * 14 13 12 16 16 C 1.38712 * 120.40024 * 90.00050 * 15 14 13 17 17 C 1.38566 * 118.43237 * 179.97438 * 16 15 14 18 18 C 1.38390 * 119.15000 * 0.02562 * 17 16 15 19 19 Cl 1.73608 * 119.63352 * 180.02562 * 18 17 16 20 20 N 1.31952 * 120.73338 * 359.97438 * 18 17 16 21 21 C 1.31900 * 121.70350 * 359.73642 * 20 18 17 22 22 H 1.09006 * 109.47378 * 53.10132 * 1 2 3 23 23 H 1.08996 * 109.47246 * 173.10534 * 1 2 3 24 24 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 25 25 H 0.97002 * 119.99516 * 355.21605 * 7 6 4 26 26 H 1.00899 * 110.99860 * 321.05226 * 12 2 1 27 27 H 1.09000 * 109.46893 * 300.00418 * 13 12 2 28 28 H 1.08997 * 109.46937 * 60.00212 * 13 12 2 29 29 H 1.09007 * 109.47226 * 300.00268 * 14 13 12 30 30 H 1.09008 * 109.47308 * 59.99536 * 14 13 12 31 31 H 1.07997 * 120.78214 * 359.95360 * 16 15 14 32 32 H 1.08004 * 120.42075 * 179.97438 * 17 16 15 33 33 H 1.08001 * 119.60968 * 180.28460 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5762 -1.6385 1.1339 6 6 1.7978 -0.1755 2.4794 7 7 1.8025 -0.9538 3.5396 8 14 1.4655 1.6533 2.6648 9 1 1.2395 1.9726 4.0973 10 1 2.6336 2.4219 2.1647 11 1 0.2592 2.0194 1.8799 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2227 -2.3469 14 6 2.5949 -0.5330 -3.5745 15 6 2.6588 0.4056 -4.7518 16 6 3.8123 1.1317 -5.0089 17 6 3.8265 1.9823 -6.1026 18 6 2.6968 2.0787 -6.8963 19 17 2.7010 3.1400 -8.2702 20 7 1.6170 1.3722 -6.6209 21 6 1.5711 0.5490 -5.5913 22 1 -0.3634 0.6170 -0.8219 23 1 -0.3633 -1.0202 -0.1234 24 1 -0.3633 0.4033 0.9453 25 1 1.9017 -1.9132 3.4364 26 1 1.4495 -1.4978 -1.4101 27 1 1.0870 0.6164 -2.5525 28 1 2.7588 1.0462 -2.1183 29 1 3.5903 -0.9272 -3.3692 30 1 1.9182 -1.3565 -3.8030 31 1 4.6789 1.0366 -4.3714 32 1 4.7075 2.5632 -6.3323 33 1 0.6711 -0.0165 -5.3999 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308850773.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:13 Heat of formation + Delta-G solvation = -3.850386 kcal Electronic energy + Delta-G solvation = -15781.528330 eV Core-core repulsion = 13059.645464 eV Total energy + Delta-G solvation = -2721.882867 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.33496 -38.26474 -37.64801 -35.47626 -34.13180 -33.10454 -31.21311 -28.25216 -26.76873 -24.81449 -24.37453 -22.31562 -21.81971 -19.55290 -18.42621 -17.83500 -16.70378 -16.25160 -15.91296 -15.58321 -15.42093 -15.08497 -14.84173 -14.21853 -14.00790 -13.83387 -13.58314 -13.28275 -13.01947 -12.64481 -12.41338 -12.36459 -12.26498 -11.98433 -11.86915 -11.63220 -11.13998 -10.92385 -10.64508 -10.35220 -9.84275 -9.09664 -8.65553 -6.26316 -0.14374 0.14498 0.77982 1.47084 1.53298 1.72568 2.51895 2.56056 3.05049 3.37344 3.50537 3.83534 3.90017 3.95735 4.09263 4.26821 4.42937 4.48983 4.61488 4.68493 4.71510 4.79642 4.88502 4.93563 5.06396 5.19420 5.33597 5.45043 5.50683 5.90094 6.12880 6.44370 6.64908 6.74683 6.81043 7.47915 8.66726 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.040399 B = 0.003718 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.915461 B = 7529.442417 C = 7729.971177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.191 3.809 3 H 0.025 0.975 4 C -0.594 4.594 5 H 0.023 0.977 6 C -0.017 4.017 7 N -0.936 5.936 8 Si 1.077 2.923 9 H -0.289 1.289 10 H -0.267 1.267 11 H -0.250 1.250 12 N -0.687 5.687 13 C 0.065 3.935 14 C -0.064 4.064 15 C -0.121 4.121 16 C -0.059 4.059 17 C -0.147 4.147 18 C 0.148 3.852 19 Cl -0.036 7.036 20 N -0.504 5.504 21 C 0.112 3.888 22 H 0.050 0.950 23 H 0.045 0.955 24 H 0.041 0.959 25 H 0.254 0.746 26 H 0.335 0.665 27 H 0.027 0.973 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.167 0.833 32 H 0.169 0.831 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.222 6.690 -21.870 22.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.081 3.919 3 H 0.043 0.957 4 C -0.632 4.632 5 H 0.041 0.959 6 C -0.216 4.216 7 N -0.572 5.572 8 Si 0.898 3.102 9 H -0.216 1.216 10 H -0.193 1.193 11 H -0.174 1.174 12 N -0.317 5.317 13 C -0.064 4.064 14 C -0.102 4.102 15 C -0.124 4.124 16 C -0.085 4.085 17 C -0.167 4.167 18 C -0.016 4.016 19 Cl -0.008 7.008 20 N -0.215 5.215 21 C -0.044 4.044 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.153 0.847 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.184 0.816 32 H 0.187 0.813 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 1.899 8.137 -21.268 22.851 hybrid contribution 0.044 -1.539 -0.568 1.641 sum 1.942 6.597 -21.836 22.893 Atomic orbital electron populations 1.22674 0.99460 1.00464 1.00339 1.19289 0.90088 0.93839 0.88642 0.95685 1.22144 1.38780 1.09619 0.92668 0.95899 1.27020 0.93279 1.09251 0.92040 1.70972 1.47523 1.05632 1.33063 0.83641 0.78716 0.71475 0.76345 1.21556 1.19266 1.17433 1.60547 1.58138 1.09698 1.03336 1.21955 0.99001 0.95504 0.89983 1.20434 1.04046 0.96164 0.89534 1.21042 0.94836 0.98800 0.97694 1.21901 0.98756 0.92442 0.95420 1.22105 0.98846 1.00724 0.95072 1.21898 0.92028 0.95423 0.92224 1.98395 1.98366 1.62393 1.41652 1.66984 1.27533 1.07276 1.19728 1.22884 0.98940 0.94017 0.88603 0.93057 0.93610 0.93971 0.93736 0.84724 0.95463 0.92195 0.89417 0.89319 0.81579 0.81342 0.80467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.86 8.90 71.98 0.64 -6.22 16 2 C 0.19 8.56 2.17 44.17 0.10 8.65 16 3 H 0.03 1.14 6.37 -2.38 -0.02 1.12 16 4 C -0.59 -33.30 9.05 25.60 0.23 -33.07 16 5 H 0.02 1.43 8.06 -2.91 -0.02 1.40 16 6 C -0.02 -0.98 5.19 84.66 0.44 -0.54 16 7 N -0.94 -58.29 13.70 21.45 0.29 -58.00 16 8 Si 1.08 49.21 26.44 68.60 1.81 51.02 16 9 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 10 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 11 H -0.25 -10.17 6.15 99.48 0.61 -9.56 16 12 N -0.69 -25.57 6.23 -495.45 -3.09 -28.66 16 13 C 0.06 1.83 5.47 86.30 0.47 2.30 16 14 C -0.06 -1.32 5.63 29.85 0.17 -1.15 16 15 C -0.12 -2.35 5.15 -19.77 -0.10 -2.45 16 16 C -0.06 -1.02 9.86 22.46 0.22 -0.80 16 17 C -0.15 -2.51 9.88 22.38 0.22 -2.29 16 18 C 0.15 3.17 7.27 84.71 0.62 3.78 16 19 Cl -0.04 -0.71 29.11 -2.72 -0.08 -0.79 16 20 N -0.50 -12.08 10.34 -186.69 -1.93 -14.02 16 21 C 0.11 2.32 10.86 84.66 0.92 3.24 16 22 H 0.05 1.74 7.64 -2.38 -0.02 1.72 16 23 H 0.04 1.80 8.00 -2.39 -0.02 1.78 16 24 H 0.04 1.81 5.48 -2.39 -0.01 1.80 16 25 H 0.25 16.02 8.73 -92.71 -0.81 15.21 16 26 H 0.34 11.69 8.38 -89.69 -0.75 10.93 16 27 H 0.03 0.74 7.58 -2.39 -0.02 0.73 16 28 H 0.06 1.78 8.05 -2.39 -0.02 1.76 16 29 H 0.09 1.84 8.10 -2.38 -0.02 1.82 16 30 H 0.09 1.63 8.09 -2.38 -0.02 1.61 16 31 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 33 H 0.18 2.95 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -66.26 294.26 1.16 -65.10 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.23 Total: 13.90 kcal Atomic # 6 Polarization: -32.48 SS G_CDS: 3.92 Total: -28.55 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -4.72 Total: -100.68 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 1.81 Total: 51.02 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.79 kcal Total: -66.26 1.16 -65.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308850773.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.248 kcal (2) G-P(sol) polarization free energy of solvation -66.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds