Wall clock time and date at job start Mon Mar 30 2020 06:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47130 * 2 1 4 4 C 1.50697 * 109.46875 * 239.99819 * 2 1 3 5 5 H 1.08005 * 119.99840 * 240.00110 * 4 2 1 6 6 C 1.37879 * 120.00223 * 60.00128 * 4 2 1 7 7 N 1.31510 * 119.99663 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99895 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47355 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46828 * 120.00292 * 8 6 4 11 11 H 1.48497 * 109.46961 * 240.00115 * 8 6 4 12 12 N 1.46904 * 109.46804 * 119.99853 * 2 1 3 13 13 C 1.46897 * 110.99755 * 206.10799 * 12 2 1 14 14 H 1.09002 * 109.47417 * 325.62098 * 13 12 2 15 15 C 1.52996 * 109.47112 * 85.62022 * 13 12 2 16 16 C 1.50698 * 109.47320 * 205.62164 * 13 12 2 17 17 C 1.38707 * 120.40904 * 139.72575 * 16 13 12 18 18 C 1.38568 * 118.44103 * 179.73387 * 17 16 13 19 19 C 1.38399 * 119.14450 * 0.53990 * 18 17 16 20 20 Cl 1.73596 * 119.62996 * 179.70425 * 19 18 17 21 21 N 1.31944 * 120.73075 * 359.71737 * 19 18 17 22 22 C 1.31909 * 121.70938 * 0.02562 * 21 19 18 23 23 H 1.09002 * 109.47238 * 173.96645 * 1 2 3 24 24 H 1.08995 * 109.47041 * 293.96560 * 1 2 3 25 25 H 1.08999 * 109.47047 * 53.96740 * 1 2 3 26 26 H 0.97001 * 119.99953 * 179.97438 * 7 6 4 27 27 H 1.00904 * 111.00000 * 82.16098 * 12 2 1 28 28 H 1.08998 * 109.47353 * 174.96687 * 15 13 12 29 29 H 1.09005 * 109.47265 * 294.96501 * 15 13 12 30 30 H 1.09000 * 109.47354 * 54.96412 * 15 13 12 31 31 H 1.08009 * 120.77714 * 359.97438 * 17 16 13 32 32 H 1.07992 * 120.42544 * 180.27978 * 18 17 16 33 33 H 1.07998 * 119.60513 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1473 -2.2865 -3.6037 10 1 1.1677 -1.5868 -4.8164 11 1 3.1472 -0.1860 -4.8160 12 7 2.0196 -0.6925 1.1995 13 6 3.3562 -0.2127 1.5756 14 1 3.9209 0.0318 0.6759 15 6 3.2226 1.0363 2.4490 16 6 4.0781 -1.2888 2.3449 17 6 5.4273 -1.5239 2.1252 18 6 6.0518 -2.5196 2.8591 19 6 5.3108 -3.2490 3.7726 20 17 6.0787 -4.5045 4.6933 21 7 4.0273 -3.0008 3.9512 22 6 3.4027 -2.0572 3.2733 23 1 -0.3634 -1.0220 -0.1080 24 1 -0.3633 0.4174 0.9390 25 1 -0.3633 0.6045 -0.8310 26 1 0.7096 1.1617 -3.4844 27 1 2.0190 -1.6926 1.0653 28 1 4.2081 1.3402 2.8016 29 1 2.7811 1.8432 1.8641 30 1 2.5832 0.8153 3.3037 31 1 5.9791 -0.9419 1.4018 32 1 7.1021 -2.7267 2.7171 33 1 2.3512 -1.8826 3.4469 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308852317.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:28 Heat of formation + Delta-G solvation = 18.303240 kcal Electronic energy + Delta-G solvation = -16375.903543 eV Core-core repulsion = 13654.981330 eV Total energy + Delta-G solvation = -2720.922213 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.28370 -36.98220 -36.31073 -33.64236 -32.34442 -31.12499 -29.19579 -27.25028 -25.10904 -23.93327 -23.55979 -20.62724 -19.85339 -17.41702 -16.70996 -16.58291 -15.36902 -14.81334 -14.46434 -14.29451 -13.81807 -13.28193 -13.24784 -12.85759 -12.29806 -11.98488 -11.80154 -11.48663 -11.36919 -11.28968 -11.01673 -10.91064 -10.80712 -10.32712 -10.08302 -10.01169 -9.81195 -9.48519 -9.14022 -8.71837 -8.47828 -7.45585 -6.07713 -4.19471 0.98298 1.22130 1.81592 3.21226 3.30365 3.33199 3.70368 4.33804 4.53152 4.78597 4.87535 5.03547 5.14986 5.20403 5.35574 5.65288 5.82216 5.86031 5.98127 6.11621 6.33668 6.47223 6.59538 6.68686 6.84467 7.08655 7.23809 7.43692 7.68328 7.77057 7.97624 8.06561 8.20818 8.51947 8.91798 9.48833 10.94313 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.026909 B = 0.005165 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.298948 B = 5420.283542 C = 5949.439471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.208 3.792 3 H 0.035 0.965 4 C -0.547 4.547 5 H 0.053 0.947 6 C 0.069 3.931 7 N -0.884 5.884 8 Si 0.888 3.112 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.684 5.684 13 C 0.127 3.873 14 H 0.062 0.938 15 C -0.131 4.131 16 C -0.117 4.117 17 C -0.061 4.061 18 C -0.156 4.156 19 C 0.163 3.837 20 Cl -0.046 7.046 21 N -0.481 5.481 22 C 0.134 3.866 23 H 0.025 0.975 24 H 0.015 0.985 25 H 0.078 0.922 26 H 0.261 0.739 27 H 0.330 0.670 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.793 -3.695 10.255 14.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.100 3.900 3 H 0.053 0.947 4 C -0.586 4.586 5 H 0.071 0.929 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.716 3.284 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.315 5.315 13 C 0.016 3.984 14 H 0.080 0.920 15 C -0.189 4.189 16 C -0.120 4.120 17 C -0.088 4.088 18 C -0.177 4.177 19 C -0.002 4.002 20 Cl -0.017 7.017 21 N -0.191 5.191 22 C -0.023 4.023 23 H 0.045 0.955 24 H 0.034 0.966 25 H 0.096 0.904 26 H 0.071 0.929 27 H 0.147 0.853 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 7.974 -3.752 11.244 14.286 hybrid contribution 1.429 -0.596 -2.251 2.732 sum 9.404 -4.348 8.993 13.719 Atomic orbital electron populations 1.21667 0.97558 0.99796 0.99107 1.19201 0.92500 0.94103 0.84166 0.94697 1.21844 1.32059 1.12789 0.91888 0.92892 1.24915 0.94749 0.94802 0.98938 1.69900 1.36262 1.22645 1.23445 0.86608 0.78756 0.79723 0.83319 1.19959 1.20888 1.20993 1.61146 1.20432 1.09624 1.40254 1.20336 0.90954 0.91373 0.95692 0.91995 1.21775 1.00376 0.97014 0.99778 1.21396 0.94543 0.98402 0.97660 1.21576 0.94328 0.95572 0.97280 1.21756 1.01455 0.97261 0.97206 1.21575 0.90936 0.93045 0.94613 1.98381 1.78674 1.51191 1.73504 1.67044 1.08619 1.17953 1.25492 1.22703 1.00475 0.88810 0.90340 0.95539 0.96615 0.90362 0.92892 0.85263 0.93556 0.91886 0.92316 0.83846 0.84120 0.80896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.89 9.20 37.16 0.34 -2.55 16 2 C 0.21 4.89 2.39 -68.86 -0.16 4.72 16 3 H 0.04 0.90 7.20 -51.93 -0.37 0.52 16 4 C -0.55 -14.16 8.32 -34.44 -0.29 -14.44 16 5 H 0.05 1.38 7.72 -52.48 -0.41 0.97 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 7 N -0.88 -24.33 11.39 55.43 0.63 -23.70 16 8 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.68 -13.23 5.47 -102.17 -0.56 -13.79 16 13 C 0.13 2.14 2.64 -68.87 -0.18 1.95 16 14 H 0.06 1.16 7.56 -51.93 -0.39 0.77 16 15 C -0.13 -1.98 9.36 37.16 0.35 -1.64 16 16 C -0.12 -1.74 4.72 -104.48 -0.49 -2.24 16 17 C -0.06 -0.80 9.82 -39.29 -0.39 -1.19 16 18 C -0.16 -1.92 9.88 -39.40 -0.39 -2.31 16 19 C 0.16 2.27 7.27 -17.44 -0.13 2.15 16 20 Cl -0.05 -0.56 29.11 -51.86 -1.51 -2.07 16 21 N -0.48 -7.44 10.34 -10.36 -0.11 -7.54 16 22 C 0.13 2.00 10.17 -17.55 -0.18 1.82 16 23 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.08 2.01 6.26 -51.93 -0.32 1.69 16 26 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 27 H 0.33 6.49 7.64 -39.29 -0.30 6.19 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 1.03 7.55 -51.93 -0.39 0.63 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.14 1.61 8.06 -52.48 -0.42 1.19 16 32 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.17 2.49 7.72 -52.49 -0.41 2.09 16 LS Contribution 294.89 15.07 4.44 4.44 Total: -1.00 -27.13 294.89 -8.00 -35.13 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -4.27 Total: 3.87 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -1.61 Total: -11.98 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: -0.03 Total: -45.02 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.51 Total: -2.07 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.13 -8.00 -35.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308852317.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.433 kcal (2) G-P(sol) polarization free energy of solvation -27.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds