Wall clock time and date at job start Mon Mar 30 2020 06:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47130 * 2 1 4 4 C 1.50697 * 109.46875 * 239.99819 * 2 1 3 5 5 H 1.08005 * 119.99840 * 240.00110 * 4 2 1 6 6 C 1.37879 * 120.00223 * 60.00128 * 4 2 1 7 7 N 1.31510 * 119.99663 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99895 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47355 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46828 * 120.00292 * 8 6 4 11 11 H 1.48497 * 109.46961 * 240.00115 * 8 6 4 12 12 N 1.46904 * 109.46804 * 119.99853 * 2 1 3 13 13 C 1.46897 * 110.99755 * 206.10799 * 12 2 1 14 14 H 1.09002 * 109.47417 * 325.62098 * 13 12 2 15 15 C 1.52996 * 109.47112 * 85.62022 * 13 12 2 16 16 C 1.50698 * 109.47320 * 205.62164 * 13 12 2 17 17 C 1.38707 * 120.40904 * 139.72575 * 16 13 12 18 18 C 1.38568 * 118.44103 * 179.73387 * 17 16 13 19 19 C 1.38399 * 119.14450 * 0.53990 * 18 17 16 20 20 Cl 1.73596 * 119.62996 * 179.70425 * 19 18 17 21 21 N 1.31944 * 120.73075 * 359.71737 * 19 18 17 22 22 C 1.31909 * 121.70938 * 0.02562 * 21 19 18 23 23 H 1.09002 * 109.47238 * 173.96645 * 1 2 3 24 24 H 1.08995 * 109.47041 * 293.96560 * 1 2 3 25 25 H 1.08999 * 109.47047 * 53.96740 * 1 2 3 26 26 H 0.97001 * 119.99953 * 179.97438 * 7 6 4 27 27 H 1.00904 * 111.00000 * 82.16098 * 12 2 1 28 28 H 1.08998 * 109.47353 * 174.96687 * 15 13 12 29 29 H 1.09005 * 109.47265 * 294.96501 * 15 13 12 30 30 H 1.09000 * 109.47354 * 54.96412 * 15 13 12 31 31 H 1.08009 * 120.77714 * 359.97438 * 17 16 13 32 32 H 1.07992 * 120.42544 * 180.27978 * 18 17 16 33 33 H 1.07998 * 119.60513 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1473 -2.2865 -3.6037 10 1 1.1677 -1.5868 -4.8164 11 1 3.1472 -0.1860 -4.8160 12 7 2.0196 -0.6925 1.1995 13 6 3.3562 -0.2127 1.5756 14 1 3.9209 0.0318 0.6759 15 6 3.2226 1.0363 2.4490 16 6 4.0781 -1.2888 2.3449 17 6 5.4273 -1.5239 2.1252 18 6 6.0518 -2.5196 2.8591 19 6 5.3108 -3.2490 3.7726 20 17 6.0787 -4.5045 4.6933 21 7 4.0273 -3.0008 3.9512 22 6 3.4027 -2.0572 3.2733 23 1 -0.3634 -1.0220 -0.1080 24 1 -0.3633 0.4174 0.9390 25 1 -0.3633 0.6045 -0.8310 26 1 0.7096 1.1617 -3.4844 27 1 2.0190 -1.6926 1.0653 28 1 4.2081 1.3402 2.8016 29 1 2.7811 1.8432 1.8641 30 1 2.5832 0.8153 3.3037 31 1 5.9791 -0.9419 1.4018 32 1 7.1021 -2.7267 2.7171 33 1 2.3512 -1.8826 3.4469 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308852317.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:27 Heat of formation + Delta-G solvation = 2.439866 kcal Electronic energy + Delta-G solvation = -16376.591431 eV Core-core repulsion = 13654.981330 eV Total energy + Delta-G solvation = -2721.610101 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.39556 -38.33797 -37.51908 -35.32457 -33.59165 -32.69678 -30.48806 -28.84976 -27.13541 -25.08079 -24.70068 -22.18191 -21.41563 -18.75368 -18.34831 -17.74886 -16.84270 -16.59155 -15.61258 -15.51459 -15.24585 -14.87421 -14.40253 -14.22319 -13.83848 -13.41529 -13.35375 -12.95412 -12.83864 -12.77705 -12.47174 -12.38900 -12.27343 -12.12554 -11.94120 -11.66818 -11.08905 -10.90137 -10.59440 -10.50825 -9.82973 -9.13281 -8.07659 -6.27447 -0.10458 0.16520 0.78749 1.37125 1.41134 1.49783 2.40058 2.60899 3.15422 3.44875 3.52434 3.73738 3.97479 3.98343 4.20325 4.49404 4.58224 4.68807 4.85389 4.89008 4.96157 5.11393 5.18120 5.22510 5.29000 5.44442 5.50348 5.53722 5.70698 6.06944 6.15442 6.34394 6.69335 6.77686 6.98770 7.44278 8.91429 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.026909 B = 0.005165 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.298948 B = 5420.283542 C = 5949.439471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.214 3.786 3 H 0.011 0.989 4 C -0.555 4.555 5 H 0.049 0.951 6 C 0.022 3.978 7 N -0.911 5.911 8 Si 0.948 3.052 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.280 1.280 12 N -0.675 5.675 13 C 0.132 3.868 14 H 0.042 0.958 15 C -0.125 4.125 16 C -0.127 4.127 17 C -0.059 4.059 18 C -0.146 4.146 19 C 0.151 3.849 20 Cl -0.033 7.033 21 N -0.501 5.501 22 C 0.129 3.871 23 H 0.022 0.978 24 H 0.031 0.969 25 H 0.053 0.947 26 H 0.262 0.738 27 H 0.330 0.670 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.163 0.837 32 H 0.173 0.827 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.347 -4.503 10.602 15.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 H 0.029 0.971 4 C -0.594 4.594 5 H 0.067 0.933 6 C -0.178 4.178 7 N -0.550 5.550 8 Si 0.774 3.226 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.206 1.206 12 N -0.305 5.305 13 C 0.021 3.979 14 H 0.060 0.940 15 C -0.183 4.183 16 C -0.129 4.129 17 C -0.085 4.085 18 C -0.166 4.166 19 C -0.013 4.013 20 Cl -0.004 7.004 21 N -0.212 5.212 22 C -0.028 4.028 23 H 0.041 0.959 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.146 0.854 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.181 0.819 32 H 0.190 0.810 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 9.536 -4.565 11.608 15.701 hybrid contribution 1.001 -0.376 -2.291 2.528 sum 10.537 -4.941 9.317 14.908 Atomic orbital electron populations 1.21517 0.97658 0.99093 0.98905 1.18969 0.92432 0.92953 0.85100 0.97122 1.22111 1.31735 1.12605 0.92947 0.93304 1.25614 0.95067 0.95493 1.01612 1.70015 1.37229 1.23785 1.23985 0.85674 0.78149 0.78698 0.80079 1.19616 1.20836 1.20627 1.61053 1.22408 1.09198 1.37832 1.20275 0.89403 0.92764 0.95464 0.93999 1.21718 1.01748 0.95600 0.99260 1.21181 0.95385 0.98300 0.98055 1.21831 0.93655 0.95673 0.97361 1.22052 1.02756 0.96005 0.95785 1.21916 0.90789 0.93518 0.95059 1.98385 1.78231 1.50596 1.73225 1.67035 1.09649 1.18404 1.26136 1.22649 1.00549 0.89025 0.90595 0.95855 0.94972 0.92823 0.92890 0.85376 0.91225 0.93630 0.91799 0.81918 0.80993 0.81066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.37 9.20 71.98 0.66 -4.70 16 2 C 0.21 10.17 2.39 44.17 0.11 10.27 16 3 H 0.01 0.57 7.20 -2.39 -0.02 0.55 16 4 C -0.55 -28.80 8.32 25.60 0.21 -28.58 16 5 H 0.05 2.53 7.72 -2.91 -0.02 2.50 16 6 C 0.02 1.19 5.30 84.66 0.45 1.64 16 7 N -0.91 -50.62 11.39 21.45 0.24 -50.38 16 8 Si 0.95 42.22 29.54 68.60 2.03 44.25 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 N -0.68 -26.02 5.47 -477.17 -2.61 -28.62 16 13 C 0.13 4.34 2.64 44.17 0.12 4.45 16 14 H 0.04 1.56 7.56 -2.39 -0.02 1.54 16 15 C -0.13 -3.68 9.36 71.98 0.67 -3.01 16 16 C -0.13 -3.58 4.72 -19.77 -0.09 -3.68 16 17 C -0.06 -1.40 9.82 22.46 0.22 -1.18 16 18 C -0.15 -3.16 9.88 22.39 0.22 -2.94 16 19 C 0.15 3.91 7.27 84.71 0.62 4.52 16 20 Cl -0.03 -0.73 29.11 -2.72 -0.08 -0.81 16 21 N -0.50 -14.83 10.34 -186.70 -1.93 -16.76 16 22 C 0.13 3.71 10.17 84.66 0.86 4.58 16 23 H 0.02 1.06 8.14 -2.39 -0.02 1.05 16 24 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.05 2.80 6.26 -2.39 -0.01 2.79 16 26 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 27 H 0.33 12.85 7.64 -89.69 -0.68 12.17 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.04 1.48 7.55 -2.38 -0.02 1.46 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 32 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.17 4.86 7.72 -2.91 -0.02 4.83 16 Total: -1.00 -57.04 294.89 2.13 -54.91 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.43 Total: 16.04 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 4.05 Total: -18.62 kcal Atomic # 7 Polarization: -91.47 SS G_CDS: -4.29 Total: -95.76 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.81 kcal Total: -57.04 2.13 -54.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308852317.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.349 kcal (2) G-P(sol) polarization free energy of solvation -57.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds